nd-arrow-array 0.5.0__tar.gz

nd_arrow_array-0.5.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: nd-arrow-array
+Version: 0.5.0
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Rust
+Classifier: Topic :: Scientific/Engineering
+Classifier: Typing :: Typed
+Requires-Dist: numpy>=1.21
+Requires-Dist: pyarrow>=14 ; extra == 'arrow'
+Requires-Dist: pytest ; extra == 'test'
+Requires-Dist: pyarrow>=14 ; extra == 'test'
+Requires-Dist: xarray>=2023.1 ; extra == 'test'
+Requires-Dist: cftime>=1.6 ; extra == 'test'
+Requires-Dist: mypy ; extra == 'test'
+Requires-Dist: xarray>=2023.1 ; extra == 'xarray'
+Requires-Dist: cftime>=1.6 ; extra == 'xarray'
+Provides-Extra: arrow
+Provides-Extra: test
+Provides-Extra: xarray
+Summary: N-dimensional Arrow arrays with named dimensions and attributes
+Keywords: arrow,ndarray,xarray,netcdf,tensor
+License: Apache-2.0
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
+Project-URL: Changelog, https://github.com/robinskil/nd-arrow-array/blob/main/CHANGELOG.md
+Project-URL: Format, https://github.com/robinskil/nd-arrow-array/blob/main/FORMAT.md
+Project-URL: Repository, https://github.com/robinskil/nd-arrow-array
+
+# nd-arrow-array (Python)
+
+Python bindings for the `nd_arrow.array` Arrow extension type.
+The PyPI package is `nd-arrow-array`. The import name is `nd_arrow_array`.
+The bindings move N-dimensional arrays between NumPy, pyarrow and the
+format in [FORMAT.md](https://github.com/robinskil/nd-arrow-array/blob/main/FORMAT.md).
+
+## Install
+
+```bash
+pip install nd-arrow-array            # NumPy only
+pip install nd-arrow-array[arrow]     # with pyarrow
+pip install nd-arrow-array[xarray]    # with xarray and cftime
+```
+
+To build from source, run `pip install maturin` and `maturin develop` in this directory.
+
+## Classes
+
+| Class | Content |
+|---|---|
+| `NdArray` | One array: values, named dimensions, attributes. |
+| `NdColumn` | An Arrow column. Each row is one `NdArray` or `None`. |
+| `NdRecordBatch` | Named arrays on one shared grid, with global attributes. |
+
+## Example
+
+```python
+import numpy as np
+import nd_arrow_array as nda
+
+a = nda.NdArray.from_numpy(
+    np.arange(6.0).reshape(2, 3),
+    dims=["time", "lat"],
+    attrs={"units": "K", "valid_range": np.array([0, 400], dtype="float32")},
+)
+a.sizes            # {'time': 2, 'lat': 3}
+a.set_attr("long_name", "sea surface temperature")
+a.to_numpy()
+
+col = nda.NdColumn.from_arrays([a, None])
+arr = col.to_arrow()                    # pyarrow array
+nda.NdColumn.from_arrow(arr)[0] == a    # True
+```
+
+## pyarrow
+
+`pip install nd-arrow-array[arrow]` adds pyarrow. pyarrow sees an nd column as a
+`struct` column. The field metadata `ARROW:extension:name = nd_arrow.array`
+marks it as an nd column. See [FORMAT.md](https://github.com/robinskil/nd-arrow-array/blob/main/FORMAT.md).
+
+### Arrays and columns
+
+```python
+import pyarrow as pa
+
+# An array from flat pyarrow values in C order.
+a = nda.NdArray(pa.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]),
+                dims={"time": 2, "lat": 3}, attrs={"units": "K"})
+a.values                         # the flat values as a pyarrow.Array
+
+col = nda.NdColumn.from_arrays([a, None])
+arr = col.to_arrow()             # pyarrow.StructArray, one row per array
+nda.NdColumn.from_arrow(arr)     # back to an NdColumn
+pa.field(col).metadata           # the extension name and version
+```
+
+### Record batches and tables
+
+```python
+lat = nda.NdArray.from_numpy(np.array([-10.0, 0.0, 10.0]), dims=["lat"])
+batch = nda.NdRecordBatch({"sst": a, "lat": lat}, attrs={"title": "demo"})
+
+rb = batch.to_arrow()            # pyarrow.RecordBatch with one row
+table = pa.table(batch)          # pyarrow.Table, through the PyCapsule interface
+
+# Many batches with one schema: one row each.
+rows = nda.encode_batches([batch, other_batch])
+batches = nda.NdRecordBatch.from_arrow(rows)   # a list, one NdRecordBatch per row
+```
+
+`NdRecordBatch.from_arrow` accepts a `RecordBatch`, a `Table` or a
+`RecordBatchReader`. It returns one `NdRecordBatch` for each row.
+The global attributes travel in the `__global_attrs__` column.
+
+### Files
+
+Parquet and Arrow IPC keep the field metadata, so the nd columns survive a
+write and a read:
+
+```python
+import pyarrow.parquet as pq
+
+pq.write_table(pa.Table.from_batches([rows]), "data.parquet")
+batches = nda.NdRecordBatch.from_arrow(pq.read_table("data.parquet"))
+
+with pa.OSFile("data.arrow", "wb") as sink, pa.ipc.new_file(sink, rows.schema) as writer:
+    writer.write_batch(rows)
+with pa.memory_map("data.arrow") as source:
+    batches = nda.NdRecordBatch.from_arrow(pa.ipc.open_file(source).read_all())
+```
+
+### Other libraries
+
+`NdArray`, `NdColumn` and `NdRecordBatch` implement the Arrow PyCapsule
+interface (`__arrow_c_array__`, `__arrow_c_stream__`, `__arrow_c_schema__`).
+pyarrow, polars, DuckDB and other Arrow libraries read them without a copy,
+for example `pa.array(col)` or `pa.table(batch)`.
+
+## xarray
+
+`pip install nd-arrow-array[xarray]` adds xarray and cftime.
+
+```python
+import xarray as xr
+
+ds = xr.Dataset(
+    {"air": (("time", "lat"), np.zeros((2, 3)), {"units": "K"})},
+    coords={"time": np.array(["2020-01-01", "2020-01-02"], "datetime64[ns]"),
+            "lat": [-10.0, 0.0, 10.0]},
+)
+batch = nda.NdRecordBatch.from_xarray(ds)   # all variables and coordinates
+batch.to_xarray()                           # an xarray.Dataset
+
+a = nda.NdArray.from_xarray(ds["air"])      # values, dims and attrs only
+a.to_xarray(name="air")                     # an xarray.DataArray
+```
+
+- `NdRecordBatch.from_xarray` accepts a `Dataset` or a `DataArray`.
+  Each variable and each coordinate becomes a column.
+- A 1-D column with the name of its dimension becomes an index coordinate.
+- Other coordinates go into the CF `coordinates` attribute of the data
+  variables. A coordinate that no data variable uses goes into the
+  `coordinates` attribute of the batch.
+- `NdArray.from_xarray` does not keep coordinates.
+- In `to_xarray`, nulls become `NaN` or `NaT`. Integer and bool arrays with
+  nulls become `float64`, as in xarray CF decoding.
+- Object arrays must hold `str` or cftime dates. `None` and `NaN` become nulls.
+- cftime dates become `timestamp[us]` in the standard calendar:
+  - `standard`, `gregorian`, `proleptic_gregorian` and `julian` keep the
+    exact instant;
+  - `noleap`, `365_day`, `all_leap`, `366_day` and `360_day` keep the year,
+    month, day and time. A date that the standard calendar does not have,
+    such as 30 February, raises `ValueError`. Use
+    `convert_calendar(..., align_on="date")` in xarray first.
+
+## Rules
+
+- NumPy dtypes: `bool`, signed and unsigned integers, `float16`, `float32`,
+  `float64`, `datetime64` and `timedelta64` (`s`, `ms`, `us`, `ns`) and `str`.
+  Other dtypes raise `TypeError`.
+- A `numpy.ma.MaskedArray` mask and `NaT` become nulls. `NaN` stays a value.
+- `to_numpy()` returns a `MaskedArray` when the values have nulls.
+- `attrs` returns a copy. Assign a new dict, or use `set_attr` and `del_attr`.
+- All classes implement the Arrow PyCapsule interface, so pyarrow, polars
+  and DuckDB can read them.
+- The package ships type stubs (`py.typed`), so mypy and pyright check calls.
+
+## Test
+
+```bash
+pip install pytest mypy numpy pyarrow xarray cftime
+maturin develop && pytest
+python -m mypy.stubtest nd_arrow_array          # stubs match the module
+mypy --strict --warn-unused-ignores tests/typing
+```
+

nd_arrow_array-0.5.0/README.md

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+# nd-arrow-array (Python)
+
+Python bindings for the `nd_arrow.array` Arrow extension type.
+The PyPI package is `nd-arrow-array`. The import name is `nd_arrow_array`.
+The bindings move N-dimensional arrays between NumPy, pyarrow and the
+format in [FORMAT.md](https://github.com/robinskil/nd-arrow-array/blob/main/FORMAT.md).
+
+## Install
+
+```bash
+pip install nd-arrow-array            # NumPy only
+pip install nd-arrow-array[arrow]     # with pyarrow
+pip install nd-arrow-array[xarray]    # with xarray and cftime
+```
+
+To build from source, run `pip install maturin` and `maturin develop` in this directory.
+
+## Classes
+
+| Class | Content |
+|---|---|
+| `NdArray` | One array: values, named dimensions, attributes. |
+| `NdColumn` | An Arrow column. Each row is one `NdArray` or `None`. |
+| `NdRecordBatch` | Named arrays on one shared grid, with global attributes. |
+
+## Example
+
+```python
+import numpy as np
+import nd_arrow_array as nda
+
+a = nda.NdArray.from_numpy(
+    np.arange(6.0).reshape(2, 3),
+    dims=["time", "lat"],
+    attrs={"units": "K", "valid_range": np.array([0, 400], dtype="float32")},
+)
+a.sizes            # {'time': 2, 'lat': 3}
+a.set_attr("long_name", "sea surface temperature")
+a.to_numpy()
+
+col = nda.NdColumn.from_arrays([a, None])
+arr = col.to_arrow()                    # pyarrow array
+nda.NdColumn.from_arrow(arr)[0] == a    # True
+```
+
+## pyarrow
+
+`pip install nd-arrow-array[arrow]` adds pyarrow. pyarrow sees an nd column as a
+`struct` column. The field metadata `ARROW:extension:name = nd_arrow.array`
+marks it as an nd column. See [FORMAT.md](https://github.com/robinskil/nd-arrow-array/blob/main/FORMAT.md).
+
+### Arrays and columns
+
+```python
+import pyarrow as pa
+
+# An array from flat pyarrow values in C order.
+a = nda.NdArray(pa.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]),
+                dims={"time": 2, "lat": 3}, attrs={"units": "K"})
+a.values                         # the flat values as a pyarrow.Array
+
+col = nda.NdColumn.from_arrays([a, None])
+arr = col.to_arrow()             # pyarrow.StructArray, one row per array
+nda.NdColumn.from_arrow(arr)     # back to an NdColumn
+pa.field(col).metadata           # the extension name and version
+```
+
+### Record batches and tables
+
+```python
+lat = nda.NdArray.from_numpy(np.array([-10.0, 0.0, 10.0]), dims=["lat"])
+batch = nda.NdRecordBatch({"sst": a, "lat": lat}, attrs={"title": "demo"})
+
+rb = batch.to_arrow()            # pyarrow.RecordBatch with one row
+table = pa.table(batch)          # pyarrow.Table, through the PyCapsule interface
+
+# Many batches with one schema: one row each.
+rows = nda.encode_batches([batch, other_batch])
+batches = nda.NdRecordBatch.from_arrow(rows)   # a list, one NdRecordBatch per row
+```
+
+`NdRecordBatch.from_arrow` accepts a `RecordBatch`, a `Table` or a
+`RecordBatchReader`. It returns one `NdRecordBatch` for each row.
+The global attributes travel in the `__global_attrs__` column.
+
+### Files
+
+Parquet and Arrow IPC keep the field metadata, so the nd columns survive a
+write and a read:
+
+```python
+import pyarrow.parquet as pq
+
+pq.write_table(pa.Table.from_batches([rows]), "data.parquet")
+batches = nda.NdRecordBatch.from_arrow(pq.read_table("data.parquet"))
+
+with pa.OSFile("data.arrow", "wb") as sink, pa.ipc.new_file(sink, rows.schema) as writer:
+    writer.write_batch(rows)
+with pa.memory_map("data.arrow") as source:
+    batches = nda.NdRecordBatch.from_arrow(pa.ipc.open_file(source).read_all())
+```
+
+### Other libraries
+
+`NdArray`, `NdColumn` and `NdRecordBatch` implement the Arrow PyCapsule
+interface (`__arrow_c_array__`, `__arrow_c_stream__`, `__arrow_c_schema__`).
+pyarrow, polars, DuckDB and other Arrow libraries read them without a copy,
+for example `pa.array(col)` or `pa.table(batch)`.
+
+## xarray
+
+`pip install nd-arrow-array[xarray]` adds xarray and cftime.
+
+```python
+import xarray as xr
+
+ds = xr.Dataset(
+    {"air": (("time", "lat"), np.zeros((2, 3)), {"units": "K"})},
+    coords={"time": np.array(["2020-01-01", "2020-01-02"], "datetime64[ns]"),
+            "lat": [-10.0, 0.0, 10.0]},
+)
+batch = nda.NdRecordBatch.from_xarray(ds)   # all variables and coordinates
+batch.to_xarray()                           # an xarray.Dataset
+
+a = nda.NdArray.from_xarray(ds["air"])      # values, dims and attrs only
+a.to_xarray(name="air")                     # an xarray.DataArray
+```
+
+- `NdRecordBatch.from_xarray` accepts a `Dataset` or a `DataArray`.
+  Each variable and each coordinate becomes a column.
+- A 1-D column with the name of its dimension becomes an index coordinate.
+- Other coordinates go into the CF `coordinates` attribute of the data
+  variables. A coordinate that no data variable uses goes into the
+  `coordinates` attribute of the batch.
+- `NdArray.from_xarray` does not keep coordinates.
+- In `to_xarray`, nulls become `NaN` or `NaT`. Integer and bool arrays with
+  nulls become `float64`, as in xarray CF decoding.
+- Object arrays must hold `str` or cftime dates. `None` and `NaN` become nulls.
+- cftime dates become `timestamp[us]` in the standard calendar:
+  - `standard`, `gregorian`, `proleptic_gregorian` and `julian` keep the
+    exact instant;
+  - `noleap`, `365_day`, `all_leap`, `366_day` and `360_day` keep the year,
+    month, day and time. A date that the standard calendar does not have,
+    such as 30 February, raises `ValueError`. Use
+    `convert_calendar(..., align_on="date")` in xarray first.
+
+## Rules
+
+- NumPy dtypes: `bool`, signed and unsigned integers, `float16`, `float32`,
+  `float64`, `datetime64` and `timedelta64` (`s`, `ms`, `us`, `ns`) and `str`.
+  Other dtypes raise `TypeError`.
+- A `numpy.ma.MaskedArray` mask and `NaT` become nulls. `NaN` stays a value.
+- `to_numpy()` returns a `MaskedArray` when the values have nulls.
+- `attrs` returns a copy. Assign a new dict, or use `set_attr` and `del_attr`.
+- All classes implement the Arrow PyCapsule interface, so pyarrow, polars
+  and DuckDB can read them.
+- The package ships type stubs (`py.typed`), so mypy and pyright check calls.
+
+## Test
+
+```bash
+pip install pytest mypy numpy pyarrow xarray cftime
+maturin develop && pytest
+python -m mypy.stubtest nd_arrow_array          # stubs match the module
+mypy --strict --warn-unused-ignores tests/typing
+```

nd_arrow_array-0.5.0/nd-arrow-array/Cargo.toml

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+[package]
+name = "nd-arrow-array"
+version = "0.5.0"
+edition = "2024"
+rust-version = "1.85"
+description = "N-dimensional Arrow arrays as an Arrow extension type"
+license = "Apache-2.0"
+repository = "https://github.com/robinskil/nd-arrow-array"
+readme = "README.md"
+keywords = ["arrow", "ndarray", "tensor", "xarray", "netcdf"]
+categories = ["data-structures", "science", "encoding"]
+
+[package.metadata.docs.rs]
+all-features = true
+
+[dependencies]
+arrow = { version = "58.4", default-features = false }
+arrow-schema = "58.4"
+serde = { version = "1", features = ["derive"] }
+serde_json = "1"
+thiserror = "2"
+rayon = { version = "1.10", optional = true }
+ndarray = { version = "0.17", optional = true }
+
+[features]
+parallel = ["dep:rayon"]
+ndarray = ["dep:ndarray"]
+
+[dev-dependencies]
+arrow = { version = "58.4", default-features = false, features = ["ipc"] }
+criterion = "0.5"
+proptest = "1"
+
+[[bench]]
+name = "kernels"
+harness = false

nd_arrow_array-0.5.0/nd-arrow-array/LICENSE

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