nci-cidc-schemas 0.27.7__tar.gz → 0.27.8__tar.gz

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Files changed (236) hide show
  1. {nci_cidc_schemas-0.27.7/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.27.8}/PKG-INFO +1 -1
  2. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/__init__.py +1 -1
  3. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/sample.json +1 -1
  4. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8/nci_cidc_schemas.egg-info}/PKG-INFO +1 -1
  5. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_1PA_multiWES.json +3 -3
  6. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_cytof_with_analysis.json +6 -6
  7. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/manifest_data.py +47 -47
  8. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/LICENSE +0 -0
  9. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/MANIFEST.in +0 -0
  10. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/README.md +0 -0
  11. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/cli.py +0 -0
  12. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/constants.py +0 -0
  13. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/json_validation.py +0 -0
  14. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/metaschema/strict_meta_schema.json +0 -0
  15. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/migrations.py +0 -0
  16. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2 +0 -0
  17. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/__init__.py +0 -0
  18. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/constants.py +0 -0
  19. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/core.py +0 -0
  20. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/extra_metadata.py +0 -0
  21. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/merger.py +0 -0
  22. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/prism/pipelines.py +0 -0
  23. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/aliquot.json +0 -0
  24. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_bam.json +0 -0
  25. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_bam_bai.json +0 -0
  26. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_bed.json +0 -0
  27. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_bigwig.json +0 -0
  28. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_binary.json +0 -0
  29. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_clinical_csv.json +0 -0
  30. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_clinical_docx.json +0 -0
  31. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_clinical_xlsx.json +0 -0
  32. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_cncf.json +0 -0
  33. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_cns.json +0 -0
  34. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_core.json +0 -0
  35. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_csv.json +0 -0
  36. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json +0 -0
  37. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_fastq_gz.json +0 -0
  38. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_fcs.json +0 -0
  39. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_file.json +0 -0
  40. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_gz.json +0 -0
  41. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_image.json +0 -0
  42. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_jpg.json +0 -0
  43. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_json.json +0 -0
  44. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_junction.json +0 -0
  45. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_log.json +0 -0
  46. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_maf.json +0 -0
  47. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_narrowPeak.json +0 -0
  48. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_npx.json +0 -0
  49. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_ome_tiff.json +0 -0
  50. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_pdf.json +0 -0
  51. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_png.json +0 -0
  52. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_rcc.json +0 -0
  53. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_rdata.json +0 -0
  54. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_tbi.json +0 -0
  55. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_text.json +0 -0
  56. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_tsv.json +0 -0
  57. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_vcf.json +0 -0
  58. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_vcf_gz.json +0 -0
  59. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_xlsx.json +0 -0
  60. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_yaml.json +0 -0
  61. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/artifacts/artifact_zip.json +0 -0
  62. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/atacseq_assay.json +0 -0
  63. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/antibody.json +0 -0
  64. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/assay_core.json +0 -0
  65. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/available_assays.json +0 -0
  66. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/available_ngs_analyses.json +0 -0
  67. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/composite_image.json +0 -0
  68. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/controls.json +0 -0
  69. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/enrichment_core.json +0 -0
  70. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/excluded_samples.json +0 -0
  71. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/hande_local_file.json +0 -0
  72. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/image.json +0 -0
  73. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/imaging/mif_entry.json +0 -0
  74. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/imaging/mif_export.json +0 -0
  75. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/imaging/mif_input.json +0 -0
  76. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/imaging/mif_roi.json +0 -0
  77. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/imaging_data.json +0 -0
  78. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/local_file.json +0 -0
  79. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/mapping.json +0 -0
  80. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/mibi_antibody.json +0 -0
  81. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/mibi_imaging/mibi_files.json +0 -0
  82. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/mibi_imaging/mibi_input.json +0 -0
  83. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/mif_antibody.json +0 -0
  84. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/multiple_local_files.json +0 -0
  85. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/atacseq/atacseq_analysis.json +0 -0
  86. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json +0 -0
  87. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/fusion.json +0 -0
  88. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/microbiome.json +0 -0
  89. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/msisensor.json +0 -0
  90. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/neoantigen.json +0 -0
  91. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/rna_analysis.json +0 -0
  92. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/rna_level1_analysis.json +0 -0
  93. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json +0 -0
  94. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/salmon.json +0 -0
  95. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/star.json +0 -0
  96. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs/rna/trust4.json +0 -0
  97. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs_assay_core.json +0 -0
  98. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/ngs_assay_record.json +0 -0
  99. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/reads_core.json +0 -0
  100. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/components/reads_with_index.json +0 -0
  101. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/ctdna_assay.json +0 -0
  102. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/cytof_assay.json +0 -0
  103. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/cytof_assay_core.json +0 -0
  104. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/elisa_assay.json +0 -0
  105. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/hande_assay.json +0 -0
  106. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/ihc_assay.json +0 -0
  107. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/mibi_assay.json +0 -0
  108. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/microbiome_assay.json +0 -0
  109. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/mif_assay.json +0 -0
  110. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/misc_data.json +0 -0
  111. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/nanostring_assay.json +0 -0
  112. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/olink_assay.json +0 -0
  113. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/rna_assay-v0.json +0 -0
  114. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/rna_assay.json +0 -0
  115. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/tcr_analysis.json +0 -0
  116. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/tcr_assay.json +0 -0
  117. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/wes_analysis.json +0 -0
  118. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/wes_assay.json +0 -0
  119. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/wes_core.json +0 -0
  120. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/assays/wes_tumor_only_analysis.json +0 -0
  121. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/clinical_data.json +0 -0
  122. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/clinical_trial.json +0 -0
  123. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/participant.json +0 -0
  124. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/shipping_core.json +0 -0
  125. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json +0 -0
  126. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json +0 -0
  127. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json +0 -0
  128. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json +0 -0
  129. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/wes_analysis_template.json +0 -0
  130. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json +0 -0
  131. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json +0 -0
  132. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/clinical_data_template.json +0 -0
  133. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/ctdna_template.json +0 -0
  134. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/cytof_template.json +0 -0
  135. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/elisa_template.json +0 -0
  136. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/hande_template.json +0 -0
  137. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/ihc_template.json +0 -0
  138. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/mibi_template.json +0 -0
  139. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/microbiome_template.json +0 -0
  140. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/mif_template.json +0 -0
  141. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/misc_data_template.json +0 -0
  142. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/nanostring_template.json +0 -0
  143. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/olink_template.json +0 -0
  144. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/rna_bam_template.json +0 -0
  145. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/rna_fastq_template.json +0 -0
  146. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json +0 -0
  147. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/tcr_fastq_template.json +0 -0
  148. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/wes_bam_template.json +0 -0
  149. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/assays/wes_fastq_template.json +0 -0
  150. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/h_and_e_template.json +0 -0
  151. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json +0 -0
  152. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json +0 -0
  153. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json +0 -0
  154. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/pbmc_template.json +0 -0
  155. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/plasma_template.json +0 -0
  156. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/tissue_slide_template.json +0 -0
  157. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json +0 -0
  158. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json +0 -0
  159. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json +0 -0
  160. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/template.py +0 -0
  161. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/template_reader.py +0 -0
  162. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/template_writer.py +0 -0
  163. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/unprism.py +0 -0
  164. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/util.py +0 -0
  165. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/SOURCES.txt +0 -0
  166. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/dependency_links.txt +0 -0
  167. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/entry_points.txt +0 -0
  168. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/not-zip-safe +0 -0
  169. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/requires.txt +0 -0
  170. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/nci_cidc_schemas.egg-info/top_level.txt +0 -0
  171. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/requirements.txt +0 -0
  172. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/setup.cfg +0 -0
  173. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/setup.py +0 -0
  174. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/__init__.py +0 -0
  175. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/conftest.py +0 -0
  176. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/constants.py +0 -0
  177. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.1.csv +0 -0
  178. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.1.xlsx +0 -0
  179. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.2.bom.csv +0 -0
  180. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.2.csv +0 -0
  181. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.2.xlsx +0 -0
  182. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.3.xlsx +0 -0
  183. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinical_test_file.docx +0 -0
  184. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_1.json +0 -0
  185. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_ihc.json +0 -0
  186. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_minimal.json +0 -0
  187. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/date_examples.xlsx +0 -0
  188. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/elisa_test_file.1.xlsx +0 -0
  189. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/elisa_test_file.2.xlsx +0 -0
  190. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/hande_err_template.xlsx +0 -0
  191. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/olink/invalid_olink_assay_1_NPX.xlsx +0 -0
  192. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/olink/olink_assay_1_NPX.xlsx +0 -0
  193. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/olink/olink_assay_2_NPX.xlsx +0 -0
  194. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/olink/olink_assay_combined.xlsx +0 -0
  195. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/pbmc_invalid.xlsx +0 -0
  196. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/pbmc_manifest_valid.xlsx +0 -0
  197. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/1.json +0 -0
  198. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/a.json +0 -0
  199. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/b.json +0 -0
  200. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/c.json +0 -0
  201. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/d1/3.json +0 -0
  202. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/d1/d2/2.json +0 -0
  203. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/invalid_ref.json +0 -0
  204. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/target-templates/atacseq_analysis_template.json +0 -0
  205. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/target-templates/rna_level1_analysis_template.json +0 -0
  206. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/target-templates/wes_analysis_template.json +0 -0
  207. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/schemas/target-templates/wes_tumor_only_analysis_template.json +0 -0
  208. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/tiny_invalid_manifest.xlsx +0 -0
  209. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/tiny_valid_manifest.xlsx +0 -0
  210. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/__init__.py +0 -0
  211. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/__init__.py +0 -0
  212. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/analysis_data.py +0 -0
  213. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/assay_data.py +0 -0
  214. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/utils.py +0 -0
  215. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/schema/test_schema.json +0 -0
  216. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_cidc_data_model.py +0 -0
  217. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_constants.py +0 -0
  218. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_core.py +0 -0
  219. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_extra_metadata.py +0 -0
  220. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_merger.py +0 -0
  221. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/test_pipelines.py +0 -0
  222. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_artifacts.py +0 -0
  223. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_assays.py +0 -0
  224. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_clinicaltrial_examples.py +0 -0
  225. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_json_validation.py +0 -0
  226. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_migrations.py +0 -0
  227. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_schemas.py +0 -0
  228. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_strict_meta_schema.py +0 -0
  229. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_template.py +0 -0
  230. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_template_reader.py +0 -0
  231. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_template_writer.py +0 -0
  232. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_templates.py +0 -0
  233. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_trial_core.py +0 -0
  234. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_unprism.py +0 -0
  235. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/test_util.py +0 -0
  236. {nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/utils/test_template_generator.py +0 -0
{nci_cidc_schemas-0.27.7/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.27.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
2
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  Name: nci_cidc_schemas
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- Version: 0.27.7
3
+ Version: 0.27.8
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/__init__.py RENAMED
@@ -2,4 +2,4 @@
2
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  __author__ = """NCI"""
4
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  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
5
- __version__ = "0.27.07"
5
+ __version__ = "0.27.08"
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/cidc_schemas/schemas/sample.json RENAMED
@@ -493,7 +493,7 @@
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  "quality_of_sample": {
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  "description": "Final status of sample after QC and pathology review.",
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  "type": "string",
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- "enum": ["Pass", "Pass at Risk", "Fail"]
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+ "enum": ["QC Pass", "Pass at Risk", "QC Failed", "QC Lost", "QC Not Shipped"]
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  },
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  "sample_replacement": {
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  "description": "Indication if sample replacement is/was requested.",
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8/nci_cidc_schemas.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
2
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  Name: nci_cidc_schemas
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- Version: 0.27.7
3
+ Version: 0.27.8
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_1PA_multiWES.json RENAMED
@@ -116,7 +116,7 @@
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
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  "material_storage_condition": "Ambient",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "sample_replacement": "Replacement Not Requested",
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  "residual_sample_use": "Not Reported"
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  },
@@ -149,7 +149,7 @@
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
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  "material_storage_condition": "Ambient",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "sample_replacement": "Replacement Not Requested",
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  "residual_sample_use": "Not Reported"
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  },
@@ -182,7 +182,7 @@
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
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  "material_storage_condition": "Ambient",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "sample_replacement": "Replacement Not Requested",
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  "residual_sample_use": "Not Reported"
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  }
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/data/clinicaltrial_examples/CT_cytof_with_analysis.json RENAMED
@@ -185,7 +185,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "a1",
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  "parent_sample_id": "qwe",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 0,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Microliters",
@@ -210,7 +210,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "a1",
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  "parent_sample_id": "qwe",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 0,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Microliters",
@@ -242,7 +242,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "A1",
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  "parent_sample_id": "TRIALGROUP 1",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 1,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Slides",
@@ -268,7 +268,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "A2",
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  "parent_sample_id": "TRIALGROUP 2",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 1,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Slides",
@@ -294,7 +294,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "A3",
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  "parent_sample_id": "TRIALGROUP 3",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 0,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Slides",
@@ -327,7 +327,7 @@
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  "type_of_sample": "Fresh Tissue",
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  "sample_location": "A4",
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  "parent_sample_id": "TRIALGROUP 4",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "material_remaining": 0,
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  "sample_replacement": "Replacement Not Requested",
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  "material_used_units": "Slides",
{nci_cidc_schemas-0.27.7 → nci_cidc_schemas-0.27.8}/tests/prism/cidc_test_data/manifest_data.py RENAMED
@@ -85,7 +85,7 @@ def plasma() -> PrismTestData:
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
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  "material_storage_condition": "Ambient",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "sample_replacement": "Replacement Not Requested",
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  "residual_sample_use": "Sample Returned",
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  "comments": "Comment",
@@ -110,7 +110,7 @@ def plasma() -> PrismTestData:
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
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  "material_storage_condition": "Ambient",
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- "quality_of_sample": "Pass",
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+ "quality_of_sample": "QC Pass",
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  "sample_replacement": "Replacement Not Requested",
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  "residual_sample_use": "Sample Returned",
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  "comments": "No comment",
@@ -136,7 +136,7 @@ def plasma() -> PrismTestData:
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  "material_remaining": 0.0,
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  "material_remaining_units": "Milliliters",
138
138
  "material_storage_condition": "Ambient",
139
- "quality_of_sample": "Pass",
139
+ "quality_of_sample": "QC Pass",
140
140
  "sample_replacement": "Replacement Not Requested",
141
141
  "residual_sample_use": "Sample Returned",
142
142
  },
@@ -170,7 +170,7 @@ def plasma() -> PrismTestData:
170
170
  "material_remaining": 0.0,
171
171
  "material_remaining_units": "Milliliters",
172
172
  "material_storage_condition": "Ambient",
173
- "quality_of_sample": "Pass",
173
+ "quality_of_sample": "QC Pass",
174
174
  "sample_replacement": "Replacement Not Requested",
175
175
  "residual_sample_use": "Sample Returned",
176
176
  },
@@ -193,7 +193,7 @@ def plasma() -> PrismTestData:
193
193
  "material_remaining": 0.0,
194
194
  "material_remaining_units": "Milliliters",
195
195
  "material_storage_condition": "Ambient",
196
- "quality_of_sample": "Pass",
196
+ "quality_of_sample": "QC Pass",
197
197
  "sample_replacement": "Replacement Not Requested",
198
198
  "residual_sample_use": "Sample Returned",
199
199
  },
@@ -216,7 +216,7 @@ def plasma() -> PrismTestData:
216
216
  "material_remaining": 0.0,
217
217
  "material_remaining_units": "Milliliters",
218
218
  "material_storage_condition": "Ambient",
219
- "quality_of_sample": "Pass",
219
+ "quality_of_sample": "QC Pass",
220
220
  "sample_replacement": "Replacement Not Requested",
221
221
  "residual_sample_use": "Sample Returned",
222
222
  },
@@ -324,7 +324,7 @@ def pbmc() -> PrismTestData:
324
324
  "material_used": 1.0,
325
325
  "material_remaining": 0.0,
326
326
  "material_storage_condition": "Ambient",
327
- "quality_of_sample": "Pass",
327
+ "quality_of_sample": "QC Pass",
328
328
  "sample_replacement": "Replacement Not Requested",
329
329
  "residual_sample_use": "Sample Returned",
330
330
  "comments": "Comment",
@@ -364,7 +364,7 @@ def pbmc() -> PrismTestData:
364
364
  "material_used": 1.0,
365
365
  "material_remaining": 0.0,
366
366
  "material_storage_condition": "Ambient",
367
- "quality_of_sample": "Fail",
367
+ "quality_of_sample": "QC Failed",
368
368
  "sample_replacement": "Replacement Not Requested",
369
369
  "residual_sample_use": "Sample Returned",
370
370
  },
@@ -403,7 +403,7 @@ def pbmc() -> PrismTestData:
403
403
  "material_used": 1.0,
404
404
  "material_remaining": 0.0,
405
405
  "material_storage_condition": "Ambient",
406
- "quality_of_sample": "Pass",
406
+ "quality_of_sample": "QC Pass",
407
407
  "sample_replacement": "Replacement Not Requested",
408
408
  "residual_sample_use": "Sample Returned",
409
409
  },
@@ -452,7 +452,7 @@ def pbmc() -> PrismTestData:
452
452
  "material_used": 1.0,
453
453
  "material_remaining": 0.0,
454
454
  "material_storage_condition": "Ambient",
455
- "quality_of_sample": "Fail",
455
+ "quality_of_sample": "QC Failed",
456
456
  "sample_replacement": "Replacement Not Requested",
457
457
  "residual_sample_use": "Sample Returned",
458
458
  },
@@ -491,7 +491,7 @@ def pbmc() -> PrismTestData:
491
491
  "material_used": 1.0,
492
492
  "material_remaining": 0.0,
493
493
  "material_storage_condition": "Ambient",
494
- "quality_of_sample": "Pass",
494
+ "quality_of_sample": "QC Pass",
495
495
  "sample_replacement": "Replacement Not Requested",
496
496
  "residual_sample_use": "Sample Returned",
497
497
  },
@@ -530,7 +530,7 @@ def pbmc() -> PrismTestData:
530
530
  "material_used": 1.0,
531
531
  "material_remaining": 0.0,
532
532
  "material_storage_condition": "Ambient",
533
- "quality_of_sample": "Fail",
533
+ "quality_of_sample": "QC Failed",
534
534
  "sample_replacement": "Replacement Not Requested",
535
535
  "residual_sample_use": "Sample Returned",
536
536
  },
@@ -625,7 +625,7 @@ def tissue_slide() -> PrismTestData:
625
625
  "material_remaining": 1.0,
626
626
  "material_remaining_units": "Slides",
627
627
  "material_storage_condition": "Ambient",
628
- "quality_of_sample": "Pass",
628
+ "quality_of_sample": "QC Pass",
629
629
  "sample_replacement": "Replacement Not Requested",
630
630
  "residual_sample_use": "Not Reported",
631
631
  },
@@ -650,7 +650,7 @@ def tissue_slide() -> PrismTestData:
650
650
  "material_remaining": 1.0,
651
651
  "material_remaining_units": "Slides",
652
652
  "material_storage_condition": "Ambient",
653
- "quality_of_sample": "Pass",
653
+ "quality_of_sample": "QC Pass",
654
654
  "sample_replacement": "Replacement Not Requested",
655
655
  "residual_sample_use": "Not Reported",
656
656
  },
@@ -675,7 +675,7 @@ def tissue_slide() -> PrismTestData:
675
675
  "material_remaining": 0.0,
676
676
  "material_remaining_units": "Slides",
677
677
  "material_storage_condition": "Ambient",
678
- "quality_of_sample": "Pass",
678
+ "quality_of_sample": "QC Pass",
679
679
  "sample_replacement": "Replacement Not Requested",
680
680
  "residual_sample_use": "Not Reported",
681
681
  },
@@ -707,7 +707,7 @@ def tissue_slide() -> PrismTestData:
707
707
  "material_remaining": 0.0,
708
708
  "material_remaining_units": "Slides",
709
709
  "material_storage_condition": "Ambient",
710
- "quality_of_sample": "Pass",
710
+ "quality_of_sample": "QC Pass",
711
711
  "sample_replacement": "Replacement Not Requested",
712
712
  "residual_sample_use": "Not Reported",
713
713
  }
@@ -807,7 +807,7 @@ def normal_blood_dna() -> PrismTestData:
807
807
  "material_remaining": 0.0,
808
808
  "material_remaining_units": "Milliliters",
809
809
  "material_storage_condition": "Ambient",
810
- "quality_of_sample": "Pass",
810
+ "quality_of_sample": "QC Pass",
811
811
  "sample_replacement": "Replacement Not Requested",
812
812
  "residual_sample_use": "Not Reported",
813
813
  "comments": "Comment",
@@ -842,7 +842,7 @@ def normal_blood_dna() -> PrismTestData:
842
842
  "material_remaining": 0.0,
843
843
  "material_remaining_units": "Milliliters",
844
844
  "material_storage_condition": "Ambient",
845
- "quality_of_sample": "Pass",
845
+ "quality_of_sample": "QC Pass",
846
846
  "sample_replacement": "Replacement Not Requested",
847
847
  "residual_sample_use": "Not Reported",
848
848
  "comments": "No comment",
@@ -877,7 +877,7 @@ def normal_blood_dna() -> PrismTestData:
877
877
  "material_remaining": 0.0,
878
878
  "material_remaining_units": "Milliliters",
879
879
  "material_storage_condition": "Ambient",
880
- "quality_of_sample": "Pass",
880
+ "quality_of_sample": "QC Pass",
881
881
  "sample_replacement": "Replacement Not Requested",
882
882
  "residual_sample_use": "Not Reported",
883
883
  },
@@ -918,7 +918,7 @@ def normal_blood_dna() -> PrismTestData:
918
918
  "material_remaining": 0.0,
919
919
  "material_remaining_units": "Milliliters",
920
920
  "material_storage_condition": "Ambient",
921
- "quality_of_sample": "Pass",
921
+ "quality_of_sample": "QC Pass",
922
922
  "sample_replacement": "Replacement Not Requested",
923
923
  "residual_sample_use": "Not Reported",
924
924
  },
@@ -952,7 +952,7 @@ def normal_blood_dna() -> PrismTestData:
952
952
  "material_remaining": 0.0,
953
953
  "material_remaining_units": "Milliliters",
954
954
  "material_storage_condition": "Ambient",
955
- "quality_of_sample": "Pass",
955
+ "quality_of_sample": "QC Pass",
956
956
  "sample_replacement": "Replacement Not Requested",
957
957
  "residual_sample_use": "Not Reported",
958
958
  },
@@ -986,7 +986,7 @@ def normal_blood_dna() -> PrismTestData:
986
986
  "material_remaining": 0.0,
987
987
  "material_remaining_units": "Milliliters",
988
988
  "material_storage_condition": "Ambient",
989
- "quality_of_sample": "Pass",
989
+ "quality_of_sample": "QC Pass",
990
990
  "sample_replacement": "Replacement Not Requested",
991
991
  "residual_sample_use": "Not Reported",
992
992
  },
@@ -1084,7 +1084,7 @@ def normal_tissue_dna() -> PrismTestData:
1084
1084
  "material_remaining": 0.0,
1085
1085
  "material_remaining_units": "Milliliters",
1086
1086
  "material_storage_condition": "Ambient",
1087
- "quality_of_sample": "Pass",
1087
+ "quality_of_sample": "QC Pass",
1088
1088
  "sample_replacement": "Replacement Not Requested",
1089
1089
  "residual_sample_use": "Not Reported",
1090
1090
  "comments": "Comment",
@@ -1116,7 +1116,7 @@ def normal_tissue_dna() -> PrismTestData:
1116
1116
  "material_remaining": 0.0,
1117
1117
  "material_remaining_units": "Milliliters",
1118
1118
  "material_storage_condition": "Ambient",
1119
- "quality_of_sample": "Pass",
1119
+ "quality_of_sample": "QC Pass",
1120
1120
  "sample_replacement": "Replacement Not Requested",
1121
1121
  "residual_sample_use": "Not Reported",
1122
1122
  "comments": "No comment",
@@ -1148,7 +1148,7 @@ def normal_tissue_dna() -> PrismTestData:
1148
1148
  "material_remaining": 0.0,
1149
1149
  "material_remaining_units": "Milliliters",
1150
1150
  "material_storage_condition": "Ambient",
1151
- "quality_of_sample": "Pass",
1151
+ "quality_of_sample": "QC Pass",
1152
1152
  "sample_replacement": "Replacement Not Requested",
1153
1153
  "residual_sample_use": "Not Reported",
1154
1154
  },
@@ -1186,7 +1186,7 @@ def normal_tissue_dna() -> PrismTestData:
1186
1186
  "material_remaining": 0.0,
1187
1187
  "material_remaining_units": "Milliliters",
1188
1188
  "material_storage_condition": "Ambient",
1189
- "quality_of_sample": "Pass",
1189
+ "quality_of_sample": "QC Pass",
1190
1190
  "sample_replacement": "Replacement Not Requested",
1191
1191
  "residual_sample_use": "Not Reported",
1192
1192
  },
@@ -1217,7 +1217,7 @@ def normal_tissue_dna() -> PrismTestData:
1217
1217
  "material_remaining": 0.0,
1218
1218
  "material_remaining_units": "Milliliters",
1219
1219
  "material_storage_condition": "Ambient",
1220
- "quality_of_sample": "Pass",
1220
+ "quality_of_sample": "QC Pass",
1221
1221
  "sample_replacement": "Replacement Not Requested",
1222
1222
  "residual_sample_use": "Not Reported",
1223
1223
  },
@@ -1248,7 +1248,7 @@ def normal_tissue_dna() -> PrismTestData:
1248
1248
  "material_remaining": 0.0,
1249
1249
  "material_remaining_units": "Milliliters",
1250
1250
  "material_storage_condition": "Ambient",
1251
- "quality_of_sample": "Pass",
1251
+ "quality_of_sample": "QC Pass",
1252
1252
  "sample_replacement": "Replacement Not Requested",
1253
1253
  "residual_sample_use": "Not Reported",
1254
1254
  },
@@ -1345,7 +1345,7 @@ def tumor_tissue_dna() -> PrismTestData:
1345
1345
  "material_remaining": 0.0,
1346
1346
  "material_remaining_units": "Milliliters",
1347
1347
  "material_storage_condition": "Ambient",
1348
- "quality_of_sample": "Pass",
1348
+ "quality_of_sample": "QC Pass",
1349
1349
  "sample_replacement": "Replacement Not Requested",
1350
1350
  "residual_sample_use": "Not Reported",
1351
1351
  "comments": "Comment",
@@ -1379,7 +1379,7 @@ def tumor_tissue_dna() -> PrismTestData:
1379
1379
  "material_remaining": 0.0,
1380
1380
  "material_remaining_units": "Milliliters",
1381
1381
  "material_storage_condition": "Ambient",
1382
- "quality_of_sample": "Pass",
1382
+ "quality_of_sample": "QC Pass",
1383
1383
  "sample_replacement": "Replacement Not Requested",
1384
1384
  "residual_sample_use": "Not Reported",
1385
1385
  "comments": "No comment",
@@ -1412,7 +1412,7 @@ def tumor_tissue_dna() -> PrismTestData:
1412
1412
  "material_remaining": 0.0,
1413
1413
  "material_remaining_units": "Milliliters",
1414
1414
  "material_storage_condition": "Ambient",
1415
- "quality_of_sample": "Pass",
1415
+ "quality_of_sample": "QC Pass",
1416
1416
  "sample_replacement": "Replacement Not Requested",
1417
1417
  "residual_sample_use": "Not Reported",
1418
1418
  },
@@ -1450,7 +1450,7 @@ def tumor_tissue_dna() -> PrismTestData:
1450
1450
  "material_remaining": 0.0,
1451
1451
  "material_remaining_units": "Milliliters",
1452
1452
  "material_storage_condition": "Ambient",
1453
- "quality_of_sample": "Pass",
1453
+ "quality_of_sample": "QC Pass",
1454
1454
  "sample_replacement": "Replacement Not Requested",
1455
1455
  "residual_sample_use": "Not Reported",
1456
1456
  },
@@ -1481,7 +1481,7 @@ def tumor_tissue_dna() -> PrismTestData:
1481
1481
  "material_remaining": 0.0,
1482
1482
  "material_remaining_units": "Milliliters",
1483
1483
  "material_storage_condition": "Ambient",
1484
- "quality_of_sample": "Pass",
1484
+ "quality_of_sample": "QC Pass",
1485
1485
  "sample_replacement": "Replacement Not Requested",
1486
1486
  "residual_sample_use": "Not Reported",
1487
1487
  },
@@ -1512,7 +1512,7 @@ def tumor_tissue_dna() -> PrismTestData:
1512
1512
  "material_remaining": 0.0,
1513
1513
  "material_remaining_units": "Milliliters",
1514
1514
  "material_storage_condition": "Ambient",
1515
- "quality_of_sample": "Pass",
1515
+ "quality_of_sample": "QC Pass",
1516
1516
  "sample_replacement": "Replacement Not Requested",
1517
1517
  "residual_sample_use": "Not Reported",
1518
1518
  },
@@ -1609,7 +1609,7 @@ def h_and_e() -> PrismTestData:
1609
1609
  "material_remaining": 1.0,
1610
1610
  "material_remaining_units": "Slides",
1611
1611
  "material_storage_condition": "Ambient",
1612
- "quality_of_sample": "Pass",
1612
+ "quality_of_sample": "QC Pass",
1613
1613
  "sample_replacement": "Replacement Not Requested",
1614
1614
  "residual_sample_use": "Not Reported",
1615
1615
  },
@@ -1639,7 +1639,7 @@ def h_and_e() -> PrismTestData:
1639
1639
  "material_remaining": 1.0,
1640
1640
  "material_remaining_units": "Slides",
1641
1641
  "material_storage_condition": "Ambient",
1642
- "quality_of_sample": "Pass",
1642
+ "quality_of_sample": "QC Pass",
1643
1643
  "sample_replacement": "Replacement Not Requested",
1644
1644
  "residual_sample_use": "Not Reported",
1645
1645
  },
@@ -1669,7 +1669,7 @@ def h_and_e() -> PrismTestData:
1669
1669
  "material_remaining": 1.0,
1670
1670
  "material_remaining_units": "Slides",
1671
1671
  "material_storage_condition": "Ambient",
1672
- "quality_of_sample": "Pass",
1672
+ "quality_of_sample": "QC Pass",
1673
1673
  "sample_replacement": "Replacement Not Requested",
1674
1674
  "residual_sample_use": "Not Reported",
1675
1675
  },
@@ -1765,7 +1765,7 @@ def tumor_tissue_rna() -> PrismTestData:
1765
1765
  "material_remaining": 0.0,
1766
1766
  "material_remaining_units": "Milliliters",
1767
1767
  "material_storage_condition": "Ambient",
1768
- "quality_of_sample": "Pass",
1768
+ "quality_of_sample": "QC Pass",
1769
1769
  "sample_replacement": "Replacement Not Requested",
1770
1770
  "residual_sample_use": "Not Reported",
1771
1771
  "comments": "Comment",
@@ -1796,7 +1796,7 @@ def tumor_tissue_rna() -> PrismTestData:
1796
1796
  "material_remaining": 0.0,
1797
1797
  "material_remaining_units": "Milliliters",
1798
1798
  "material_storage_condition": "Ambient",
1799
- "quality_of_sample": "Pass",
1799
+ "quality_of_sample": "QC Pass",
1800
1800
  "sample_replacement": "Replacement Not Requested",
1801
1801
  "residual_sample_use": "Not Reported",
1802
1802
  "comments": "No comment",
@@ -1827,7 +1827,7 @@ def tumor_tissue_rna() -> PrismTestData:
1827
1827
  "material_remaining": 0.0,
1828
1828
  "material_remaining_units": "Milliliters",
1829
1829
  "material_storage_condition": "Ambient",
1830
- "quality_of_sample": "Pass",
1830
+ "quality_of_sample": "QC Pass",
1831
1831
  "sample_replacement": "Replacement Not Requested",
1832
1832
  "residual_sample_use": "Not Reported",
1833
1833
  },
@@ -1864,7 +1864,7 @@ def tumor_tissue_rna() -> PrismTestData:
1864
1864
  "material_remaining": 0.0,
1865
1865
  "material_remaining_units": "Milliliters",
1866
1866
  "material_storage_condition": "Ambient",
1867
- "quality_of_sample": "Pass",
1867
+ "quality_of_sample": "QC Pass",
1868
1868
  "sample_replacement": "Replacement Not Requested",
1869
1869
  "residual_sample_use": "Not Reported",
1870
1870
  },
@@ -1894,7 +1894,7 @@ def tumor_tissue_rna() -> PrismTestData:
1894
1894
  "material_remaining": 0.0,
1895
1895
  "material_remaining_units": "Milliliters",
1896
1896
  "material_storage_condition": "Ambient",
1897
- "quality_of_sample": "Pass",
1897
+ "quality_of_sample": "QC Pass",
1898
1898
  "sample_replacement": "Replacement Not Requested",
1899
1899
  "residual_sample_use": "Not Reported",
1900
1900
  },
@@ -1924,7 +1924,7 @@ def tumor_tissue_rna() -> PrismTestData:
1924
1924
  "material_remaining": 0.0,
1925
1925
  "material_remaining_units": "Milliliters",
1926
1926
  "material_storage_condition": "Ambient",
1927
- "quality_of_sample": "Pass",
1927
+ "quality_of_sample": "QC Pass",
1928
1928
  "sample_replacement": "Replacement Not Requested",
1929
1929
  "residual_sample_use": "Not Reported",
1930
1930
  },
@@ -2087,7 +2087,7 @@ def microbiome_dna() -> PrismTestData:
2087
2087
  "material_remaining": 0.0,
2088
2088
  "material_remaining_units": "Milliliters",
2089
2089
  "material_storage_condition": "Ambient",
2090
- "quality_of_sample": "Pass",
2090
+ "quality_of_sample": "QC Pass",
2091
2091
  "sample_replacement": "Replacement Not Requested",
2092
2092
  "residual_sample_use": "Not Reported",
2093
2093
  "comments": "Comment",
@@ -2115,7 +2115,7 @@ def microbiome_dna() -> PrismTestData:
2115
2115
  "material_remaining": 0.0,
2116
2116
  "material_remaining_units": "Milliliters",
2117
2117
  "material_storage_condition": "Ambient",
2118
- "quality_of_sample": "Pass",
2118
+ "quality_of_sample": "QC Pass",
2119
2119
  "sample_replacement": "Replacement Not Requested",
2120
2120
  "residual_sample_use": "Not Reported",
2121
2121
  "comments": "No comment",
@@ -2143,7 +2143,7 @@ def microbiome_dna() -> PrismTestData:
2143
2143
  "material_remaining": 0.0,
2144
2144
  "material_remaining_units": "Milliliters",
2145
2145
  "material_storage_condition": "Ambient",
2146
- "quality_of_sample": "Pass",
2146
+ "quality_of_sample": "QC Pass",
2147
2147
  "sample_replacement": "Replacement Not Requested",
2148
2148
  "residual_sample_use": "Not Reported",
2149
2149
  },
@@ -2176,7 +2176,7 @@ def microbiome_dna() -> PrismTestData:
2176
2176
  "material_remaining": 0.0,
2177
2177
  "material_remaining_units": "Milliliters",
2178
2178
  "material_storage_condition": "Ambient",
2179
- "quality_of_sample": "Pass",
2179
+ "quality_of_sample": "QC Pass",
2180
2180
  "sample_replacement": "Replacement Not Requested",
2181
2181
  "residual_sample_use": "Not Reported",
2182
2182
  }