nci-cidc-schemas 0.27.4__tar.gz → 0.27.5__tar.gz

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Files changed (236) hide show
  1. {nci_cidc_schemas-0.27.4/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.27.5}/PKG-INFO +1 -1
  2. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/__init__.py +1 -1
  3. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/sample.json +2 -2
  4. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5/nci_cidc_schemas.egg-info}/PKG-INFO +1 -1
  5. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_cytof_with_analysis.json +1 -1
  6. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/manifest_data.py +20 -20
  7. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/LICENSE +0 -0
  8. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/MANIFEST.in +0 -0
  9. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/README.md +0 -0
  10. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/cli.py +0 -0
  11. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/constants.py +0 -0
  12. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/json_validation.py +0 -0
  13. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/metaschema/strict_meta_schema.json +0 -0
  14. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/migrations.py +0 -0
  15. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2 +0 -0
  16. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/__init__.py +0 -0
  17. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/constants.py +0 -0
  18. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/core.py +0 -0
  19. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/extra_metadata.py +0 -0
  20. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/merger.py +0 -0
  21. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/prism/pipelines.py +0 -0
  22. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/aliquot.json +0 -0
  23. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_bam.json +0 -0
  24. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_bam_bai.json +0 -0
  25. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_bed.json +0 -0
  26. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_bigwig.json +0 -0
  27. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_binary.json +0 -0
  28. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_clinical_csv.json +0 -0
  29. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_clinical_docx.json +0 -0
  30. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_clinical_xlsx.json +0 -0
  31. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_cncf.json +0 -0
  32. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_cns.json +0 -0
  33. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_core.json +0 -0
  34. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_csv.json +0 -0
  35. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json +0 -0
  36. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_fastq_gz.json +0 -0
  37. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_fcs.json +0 -0
  38. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_file.json +0 -0
  39. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_gz.json +0 -0
  40. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_image.json +0 -0
  41. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_jpg.json +0 -0
  42. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_json.json +0 -0
  43. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_junction.json +0 -0
  44. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_log.json +0 -0
  45. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_maf.json +0 -0
  46. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_narrowPeak.json +0 -0
  47. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_npx.json +0 -0
  48. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_ome_tiff.json +0 -0
  49. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_pdf.json +0 -0
  50. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_png.json +0 -0
  51. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_rcc.json +0 -0
  52. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_rdata.json +0 -0
  53. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_tbi.json +0 -0
  54. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_text.json +0 -0
  55. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_tsv.json +0 -0
  56. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_vcf.json +0 -0
  57. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_vcf_gz.json +0 -0
  58. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_xlsx.json +0 -0
  59. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_yaml.json +0 -0
  60. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/artifacts/artifact_zip.json +0 -0
  61. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/atacseq_assay.json +0 -0
  62. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/antibody.json +0 -0
  63. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/assay_core.json +0 -0
  64. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/available_assays.json +0 -0
  65. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/available_ngs_analyses.json +0 -0
  66. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/composite_image.json +0 -0
  67. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/controls.json +0 -0
  68. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/enrichment_core.json +0 -0
  69. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/excluded_samples.json +0 -0
  70. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/hande_local_file.json +0 -0
  71. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/image.json +0 -0
  72. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/imaging/mif_entry.json +0 -0
  73. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/imaging/mif_export.json +0 -0
  74. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/imaging/mif_input.json +0 -0
  75. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/imaging/mif_roi.json +0 -0
  76. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/imaging_data.json +0 -0
  77. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/local_file.json +0 -0
  78. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/mapping.json +0 -0
  79. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/mibi_antibody.json +0 -0
  80. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/mibi_imaging/mibi_files.json +0 -0
  81. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/mibi_imaging/mibi_input.json +0 -0
  82. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/mif_antibody.json +0 -0
  83. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/multiple_local_files.json +0 -0
  84. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/atacseq/atacseq_analysis.json +0 -0
  85. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json +0 -0
  86. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/fusion.json +0 -0
  87. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/microbiome.json +0 -0
  88. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/msisensor.json +0 -0
  89. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/neoantigen.json +0 -0
  90. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/rna_analysis.json +0 -0
  91. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/rna_level1_analysis.json +0 -0
  92. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json +0 -0
  93. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/salmon.json +0 -0
  94. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/star.json +0 -0
  95. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs/rna/trust4.json +0 -0
  96. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs_assay_core.json +0 -0
  97. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/ngs_assay_record.json +0 -0
  98. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/reads_core.json +0 -0
  99. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/components/reads_with_index.json +0 -0
  100. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/ctdna_assay.json +0 -0
  101. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/cytof_assay.json +0 -0
  102. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/cytof_assay_core.json +0 -0
  103. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/elisa_assay.json +0 -0
  104. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/hande_assay.json +0 -0
  105. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/ihc_assay.json +0 -0
  106. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/mibi_assay.json +0 -0
  107. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/microbiome_assay.json +0 -0
  108. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/mif_assay.json +0 -0
  109. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/misc_data.json +0 -0
  110. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/nanostring_assay.json +0 -0
  111. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/olink_assay.json +0 -0
  112. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/rna_assay-v0.json +0 -0
  113. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/rna_assay.json +0 -0
  114. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/tcr_analysis.json +0 -0
  115. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/tcr_assay.json +0 -0
  116. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/wes_analysis.json +0 -0
  117. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/wes_assay.json +0 -0
  118. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/wes_core.json +0 -0
  119. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/assays/wes_tumor_only_analysis.json +0 -0
  120. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/clinical_data.json +0 -0
  121. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/clinical_trial.json +0 -0
  122. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/participant.json +0 -0
  123. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/shipping_core.json +0 -0
  124. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json +0 -0
  125. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json +0 -0
  126. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json +0 -0
  127. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json +0 -0
  128. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/wes_analysis_template.json +0 -0
  129. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json +0 -0
  130. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json +0 -0
  131. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/clinical_data_template.json +0 -0
  132. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/ctdna_template.json +0 -0
  133. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/cytof_template.json +0 -0
  134. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/elisa_template.json +0 -0
  135. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/hande_template.json +0 -0
  136. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/ihc_template.json +0 -0
  137. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/mibi_template.json +0 -0
  138. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/microbiome_template.json +0 -0
  139. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/mif_template.json +0 -0
  140. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/misc_data_template.json +0 -0
  141. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/nanostring_template.json +0 -0
  142. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/olink_template.json +0 -0
  143. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/rna_bam_template.json +0 -0
  144. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/rna_fastq_template.json +0 -0
  145. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json +0 -0
  146. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/tcr_fastq_template.json +0 -0
  147. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/wes_bam_template.json +0 -0
  148. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/assays/wes_fastq_template.json +0 -0
  149. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/h_and_e_template.json +0 -0
  150. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json +0 -0
  151. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json +0 -0
  152. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json +0 -0
  153. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/pbmc_template.json +0 -0
  154. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/plasma_template.json +0 -0
  155. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/tissue_slide_template.json +0 -0
  156. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json +0 -0
  157. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json +0 -0
  158. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json +0 -0
  159. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/template.py +0 -0
  160. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/template_reader.py +0 -0
  161. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/template_writer.py +0 -0
  162. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/unprism.py +0 -0
  163. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/util.py +0 -0
  164. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/SOURCES.txt +0 -0
  165. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/dependency_links.txt +0 -0
  166. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/entry_points.txt +0 -0
  167. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/not-zip-safe +0 -0
  168. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/requires.txt +0 -0
  169. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/nci_cidc_schemas.egg-info/top_level.txt +0 -0
  170. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/requirements.txt +0 -0
  171. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/setup.cfg +0 -0
  172. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/setup.py +0 -0
  173. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/__init__.py +0 -0
  174. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/conftest.py +0 -0
  175. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/constants.py +0 -0
  176. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.1.csv +0 -0
  177. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.1.xlsx +0 -0
  178. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.2.bom.csv +0 -0
  179. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.2.csv +0 -0
  180. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.2.xlsx +0 -0
  181. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.3.xlsx +0 -0
  182. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinical_test_file.docx +0 -0
  183. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_1.json +0 -0
  184. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_1PA_multiWES.json +0 -0
  185. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_ihc.json +0 -0
  186. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_minimal.json +0 -0
  187. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/date_examples.xlsx +0 -0
  188. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/elisa_test_file.1.xlsx +0 -0
  189. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/elisa_test_file.2.xlsx +0 -0
  190. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/hande_err_template.xlsx +0 -0
  191. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/olink/invalid_olink_assay_1_NPX.xlsx +0 -0
  192. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/olink/olink_assay_1_NPX.xlsx +0 -0
  193. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/olink/olink_assay_2_NPX.xlsx +0 -0
  194. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/olink/olink_assay_combined.xlsx +0 -0
  195. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/pbmc_invalid.xlsx +0 -0
  196. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/pbmc_manifest_valid.xlsx +0 -0
  197. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/1.json +0 -0
  198. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/a.json +0 -0
  199. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/b.json +0 -0
  200. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/c.json +0 -0
  201. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/d1/3.json +0 -0
  202. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/d1/d2/2.json +0 -0
  203. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/invalid_ref.json +0 -0
  204. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/target-templates/atacseq_analysis_template.json +0 -0
  205. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/target-templates/rna_level1_analysis_template.json +0 -0
  206. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/target-templates/wes_analysis_template.json +0 -0
  207. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/schemas/target-templates/wes_tumor_only_analysis_template.json +0 -0
  208. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/tiny_invalid_manifest.xlsx +0 -0
  209. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/tiny_valid_manifest.xlsx +0 -0
  210. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/__init__.py +0 -0
  211. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/__init__.py +0 -0
  212. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/analysis_data.py +0 -0
  213. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/assay_data.py +0 -0
  214. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/utils.py +0 -0
  215. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/schema/test_schema.json +0 -0
  216. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_cidc_data_model.py +0 -0
  217. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_constants.py +0 -0
  218. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_core.py +0 -0
  219. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_extra_metadata.py +0 -0
  220. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_merger.py +0 -0
  221. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/test_pipelines.py +0 -0
  222. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_artifacts.py +0 -0
  223. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_assays.py +0 -0
  224. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_clinicaltrial_examples.py +0 -0
  225. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_json_validation.py +0 -0
  226. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_migrations.py +0 -0
  227. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_schemas.py +0 -0
  228. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_strict_meta_schema.py +0 -0
  229. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_template.py +0 -0
  230. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_template_reader.py +0 -0
  231. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_template_writer.py +0 -0
  232. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_templates.py +0 -0
  233. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_trial_core.py +0 -0
  234. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_unprism.py +0 -0
  235. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/test_util.py +0 -0
  236. {nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/utils/test_template_generator.py +0 -0
{nci_cidc_schemas-0.27.4/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.27.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: nci_cidc_schemas
3
- Version: 0.27.4
3
+ Version: 0.27.5
4
4
  Summary: The CIDC data model and tools for working with it.
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-schemas
6
6
  Author: NCI
{nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/__init__.py RENAMED
@@ -2,4 +2,4 @@
2
2
 
3
3
  __author__ = """NCI"""
4
4
  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
5
- __version__ = "0.27.04"
5
+ __version__ = "0.27.05"
{nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/cidc_schemas/schemas/sample.json RENAMED
@@ -195,8 +195,8 @@
195
195
  "type": "string",
196
196
  "enum": [
197
197
  "Ficoll",
198
- "Formulin Fixation",
199
- "Formulin-Fixed Paraffin-Embedded (FFPE)",
198
+ "Formalin Fixation",
199
+ "Formalin-Fixed Paraffin-Embedded (FFPE)",
200
200
  "Frozen",
201
201
  "70% Ethanol",
202
202
  "H&E",
{nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5/nci_cidc_schemas.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: nci_cidc_schemas
3
- Version: 0.27.4
3
+ Version: 0.27.5
4
4
  Summary: The CIDC data model and tools for working with it.
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-schemas
6
6
  Author: NCI
{nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/data/clinicaltrial_examples/CT_cytof_with_analysis.json RENAMED
@@ -282,7 +282,7 @@
282
282
  "material_remaining_units": "Slides",
283
283
  "processed_sample_quantity": 4,
284
284
  "material_storage_condition": "Ambient",
285
- "fixation_stabilization_type": "Formulin-Fixed Paraffin-Embedded (FFPE)",
285
+ "fixation_stabilization_type": "Formalin-Fixed Paraffin-Embedded (FFPE)",
286
286
  "sample_collection_procedure": "Core Biopsy"
287
287
  },
288
288
  {
{nci_cidc_schemas-0.27.4 → nci_cidc_schemas-0.27.5}/tests/prism/cidc_test_data/manifest_data.py RENAMED
@@ -617,7 +617,7 @@ def tissue_slide() -> PrismTestData:
617
617
  "description_of_sample": "Normal",
618
618
  "sample_collection_procedure": "Core Biopsy",
619
619
  "core_number": "1.0",
620
- "fixation_stabilization_type": "Formulin Fixation",
620
+ "fixation_stabilization_type": "Formalin Fixation",
621
621
  "processed_sample_type": "Bone Marrow Film",
622
622
  "processed_sample_quantity": 4.0,
623
623
  "material_used": 3.0,
@@ -780,7 +780,7 @@ def normal_blood_dna() -> PrismTestData:
780
780
  {
781
781
  "shipping_entry_number": 1,
782
782
  "collection_event_name": "Baseline",
783
- "fixation_stabilization_type": "Formulin Fixation",
783
+ "fixation_stabilization_type": "Formalin Fixation",
784
784
  "parent_sample_id": "test_encrypted('TRIALGROUP 1')",
785
785
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
786
786
  "cimac_id": "CTTTP01N1.00",
@@ -815,7 +815,7 @@ def normal_blood_dna() -> PrismTestData:
815
815
  {
816
816
  "shipping_entry_number": 2,
817
817
  "collection_event_name": "Baseline",
818
- "fixation_stabilization_type": "Formulin Fixation",
818
+ "fixation_stabilization_type": "Formalin Fixation",
819
819
  "parent_sample_id": "test_encrypted('TRIALGROUP 2')",
820
820
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
821
821
  "cimac_id": "CTTTP01N2.00",
@@ -850,7 +850,7 @@ def normal_blood_dna() -> PrismTestData:
850
850
  {
851
851
  "shipping_entry_number": 3,
852
852
  "collection_event_name": "Baseline",
853
- "fixation_stabilization_type": "Formulin Fixation",
853
+ "fixation_stabilization_type": "Formalin Fixation",
854
854
  "parent_sample_id": "test_encrypted('TRIALGROUP 3')",
855
855
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
856
856
  "cimac_id": "CTTTP01N3.00",
@@ -891,7 +891,7 @@ def normal_blood_dna() -> PrismTestData:
891
891
  {
892
892
  "shipping_entry_number": 4,
893
893
  "collection_event_name": "Baseline",
894
- "fixation_stabilization_type": "Formulin Fixation",
894
+ "fixation_stabilization_type": "Formalin Fixation",
895
895
  "parent_sample_id": "test_encrypted('TRIALGROUP 4')",
896
896
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
897
897
  "cimac_id": "CTTTP02N1.00",
@@ -925,7 +925,7 @@ def normal_blood_dna() -> PrismTestData:
925
925
  {
926
926
  "shipping_entry_number": 5,
927
927
  "collection_event_name": "Baseline",
928
- "fixation_stabilization_type": "Formulin Fixation",
928
+ "fixation_stabilization_type": "Formalin Fixation",
929
929
  "parent_sample_id": "test_encrypted('TRIALGROUP 5')",
930
930
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
931
931
  "cimac_id": "CTTTP02N2.00",
@@ -959,7 +959,7 @@ def normal_blood_dna() -> PrismTestData:
959
959
  {
960
960
  "shipping_entry_number": 6,
961
961
  "collection_event_name": "Baseline",
962
- "fixation_stabilization_type": "Formulin Fixation",
962
+ "fixation_stabilization_type": "Formalin Fixation",
963
963
  "parent_sample_id": "test_encrypted('TRIALGROUP 6')",
964
964
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
965
965
  "cimac_id": "CTTTP02N3.00",
@@ -1100,7 +1100,7 @@ def normal_tissue_dna() -> PrismTestData:
1100
1100
  "type_of_sample": "Skin Tissue",
1101
1101
  "sample_collection_procedure": "Core Biopsy",
1102
1102
  "core_number": "1.0",
1103
- "fixation_stabilization_type": "Formulin Fixation",
1103
+ "fixation_stabilization_type": "Formalin Fixation",
1104
1104
  "processed_sample_type": "Bone Marrow Film",
1105
1105
  "processed_sample_quantity": 1.0,
1106
1106
  "processed_sample_derivative": "Germline DNA",
@@ -1132,7 +1132,7 @@ def normal_tissue_dna() -> PrismTestData:
1132
1132
  "type_of_sample": "Skin Tissue",
1133
1133
  "sample_collection_procedure": "Core Biopsy",
1134
1134
  "core_number": "1.0",
1135
- "fixation_stabilization_type": "Formulin Fixation",
1135
+ "fixation_stabilization_type": "Formalin Fixation",
1136
1136
  "processed_sample_type": "Bone Marrow Film",
1137
1137
  "processed_sample_quantity": 2.0,
1138
1138
  "processed_sample_derivative": "Germline DNA",
@@ -1332,7 +1332,7 @@ def tumor_tissue_dna() -> PrismTestData:
1332
1332
  "description_of_sample": "Normal",
1333
1333
  "sample_collection_procedure": "Core Biopsy",
1334
1334
  "core_number": "1.0",
1335
- "fixation_stabilization_type": "Formulin Fixation",
1335
+ "fixation_stabilization_type": "Formalin Fixation",
1336
1336
  "processed_sample_type": "Bone Marrow Film",
1337
1337
  "processed_sample_quantity": 1.0,
1338
1338
  "processed_sample_derivative": "Germline DNA",
@@ -1363,7 +1363,7 @@ def tumor_tissue_dna() -> PrismTestData:
1363
1363
  "description_of_sample": "Normal",
1364
1364
  "sample_collection_procedure": "Core Biopsy",
1365
1365
  "core_number": "1.0",
1366
- "fixation_stabilization_type": "Formulin Fixation",
1366
+ "fixation_stabilization_type": "Formalin Fixation",
1367
1367
  "processed_sample_type": "Bone Marrow Film",
1368
1368
  "processed_sample_quantity": 1.0,
1369
1369
  "processed_sample_derivative": "Germline DNA",
@@ -1397,7 +1397,7 @@ def tumor_tissue_dna() -> PrismTestData:
1397
1397
  "description_of_sample": "Normal",
1398
1398
  "sample_collection_procedure": "Core Biopsy",
1399
1399
  "core_number": "1.0",
1400
- "fixation_stabilization_type": "Formulin Fixation",
1400
+ "fixation_stabilization_type": "Formalin Fixation",
1401
1401
  "processed_sample_type": "Bone Marrow Film",
1402
1402
  "processed_sample_quantity": 2.0,
1403
1403
  "processed_sample_derivative": "Germline DNA",
@@ -1752,7 +1752,7 @@ def tumor_tissue_rna() -> PrismTestData:
1752
1752
  "description_of_sample": "Normal",
1753
1753
  "sample_collection_procedure": "Core Biopsy",
1754
1754
  "core_number": "1.0",
1755
- "fixation_stabilization_type": "Formulin Fixation",
1755
+ "fixation_stabilization_type": "Formalin Fixation",
1756
1756
  "processed_sample_type": "Bone Marrow Film",
1757
1757
  "processed_sample_quantity": 1.0,
1758
1758
  "processed_sample_derivative": "Germline RNA",
@@ -1783,7 +1783,7 @@ def tumor_tissue_rna() -> PrismTestData:
1783
1783
  "description_of_sample": "Normal",
1784
1784
  "sample_collection_procedure": "Core Biopsy",
1785
1785
  "core_number": "1.0",
1786
- "fixation_stabilization_type": "Formulin Fixation",
1786
+ "fixation_stabilization_type": "Formalin Fixation",
1787
1787
  "processed_sample_type": "Bone Marrow Film",
1788
1788
  "processed_sample_quantity": 1.0,
1789
1789
  "processed_sample_derivative": "Germline RNA",
@@ -1814,7 +1814,7 @@ def tumor_tissue_rna() -> PrismTestData:
1814
1814
  "description_of_sample": "Normal",
1815
1815
  "sample_collection_procedure": "Core Biopsy",
1816
1816
  "core_number": "1.0",
1817
- "fixation_stabilization_type": "Formulin Fixation",
1817
+ "fixation_stabilization_type": "Formalin Fixation",
1818
1818
  "processed_sample_type": "Bone Marrow Film",
1819
1819
  "processed_sample_quantity": 2.0,
1820
1820
  "processed_sample_derivative": "Germline RNA",
@@ -1851,7 +1851,7 @@ def tumor_tissue_rna() -> PrismTestData:
1851
1851
  "description_of_sample": "Normal",
1852
1852
  "sample_collection_procedure": "Core Biopsy",
1853
1853
  "core_number": "1.0",
1854
- "fixation_stabilization_type": "Formulin Fixation",
1854
+ "fixation_stabilization_type": "Formalin Fixation",
1855
1855
  "processed_sample_type": "Bone Marrow Film",
1856
1856
  "processed_sample_quantity": 1.0,
1857
1857
  "processed_sample_derivative": "Germline RNA",
@@ -2067,7 +2067,7 @@ def microbiome_dna() -> PrismTestData:
2067
2067
  {
2068
2068
  "shipping_entry_number": 1,
2069
2069
  "collection_event_name": "Baseline",
2070
- "fixation_stabilization_type": "Formulin Fixation",
2070
+ "fixation_stabilization_type": "Formalin Fixation",
2071
2071
  "parent_sample_id": "test_encrypted('TRIALGROUP 1')",
2072
2072
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
2073
2073
  "cimac_id": "CTTTP08T3.00",
@@ -2095,7 +2095,7 @@ def microbiome_dna() -> PrismTestData:
2095
2095
  {
2096
2096
  "shipping_entry_number": 2,
2097
2097
  "collection_event_name": "Pre_Day_1_Cycle_2",
2098
- "fixation_stabilization_type": "Formulin Fixation",
2098
+ "fixation_stabilization_type": "Formalin Fixation",
2099
2099
  "parent_sample_id": "test_encrypted('TRIALGROUP 2')",
2100
2100
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
2101
2101
  "cimac_id": "CTTTP08T4.00",
@@ -2123,7 +2123,7 @@ def microbiome_dna() -> PrismTestData:
2123
2123
  {
2124
2124
  "shipping_entry_number": 3,
2125
2125
  "collection_event_name": "Pre_Day_1_Cycle_2",
2126
- "fixation_stabilization_type": "Formulin Fixation",
2126
+ "fixation_stabilization_type": "Formalin Fixation",
2127
2127
  "parent_sample_id": "test_encrypted('TRIALGROUP 3')",
2128
2128
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
2129
2129
  "cimac_id": "CTTTP08T5.00",
@@ -2156,7 +2156,7 @@ def microbiome_dna() -> PrismTestData:
2156
2156
  "samples": [
2157
2157
  {
2158
2158
  "collection_event_name": "Baseline",
2159
- "fixation_stabilization_type": "Formulin Fixation",
2159
+ "fixation_stabilization_type": "Formalin Fixation",
2160
2160
  "parent_sample_id": "test_encrypted('TRIALGROUP 4')",
2161
2161
  "processed_sample_id": "test_encrypted('BIOBANK 1')",
2162
2162
  "cimac_id": "CTTTP09T1.00",