nci-cidc-schemas 0.27.28__tar.gz → 0.28.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (262) hide show
  1. {nci_cidc_schemas-0.27.28/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.28.0}/PKG-INFO +12 -15
  2. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/__init__.py +1 -1
  3. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/json_validation.py +1 -2
  4. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/template.py +1 -1
  5. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0/nci_cidc_schemas.egg-info}/PKG-INFO +12 -15
  6. nci_cidc_schemas-0.28.0/nci_cidc_schemas.egg-info/requires.txt +11 -0
  7. nci_cidc_schemas-0.28.0/requirements.txt +11 -0
  8. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/setup.py +1 -1
  9. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_core.py +1 -1
  10. nci_cidc_schemas-0.27.28/nci_cidc_schemas.egg-info/requires.txt +0 -14
  11. nci_cidc_schemas-0.27.28/requirements.txt +0 -14
  12. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/LICENSE +0 -0
  13. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/MANIFEST.in +0 -0
  14. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/README.md +0 -0
  15. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/cli.py +0 -0
  16. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/constants.py +0 -0
  17. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/metaschema/strict_meta_schema.json +0 -0
  18. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/migrations.py +0 -0
  19. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2 +0 -0
  20. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/__init__.py +0 -0
  21. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/constants.py +0 -0
  22. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/core.py +0 -0
  23. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/extra_metadata.py +0 -0
  24. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/merger.py +0 -0
  25. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/prism/pipelines.py +0 -0
  26. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/aliquot.json +0 -0
  27. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_bam.json +0 -0
  28. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_bam_bai.json +0 -0
  29. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_bed.json +0 -0
  30. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_bigwig.json +0 -0
  31. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_binary.json +0 -0
  32. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_clinical_csv.json +0 -0
  33. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_clinical_docx.json +0 -0
  34. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_clinical_xlsx.json +0 -0
  35. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_cncf.json +0 -0
  36. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_cns.json +0 -0
  37. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_core.json +0 -0
  38. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_csv.json +0 -0
  39. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json +0 -0
  40. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_fastq_gz.json +0 -0
  41. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_fcs.json +0 -0
  42. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_file.json +0 -0
  43. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_gz.json +0 -0
  44. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_h5ad.json +0 -0
  45. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_html.json +0 -0
  46. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_image.json +0 -0
  47. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_jpg.json +0 -0
  48. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_json.json +0 -0
  49. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_junction.json +0 -0
  50. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_log.json +0 -0
  51. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_maf.json +0 -0
  52. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_mtx.json +0 -0
  53. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_narrowPeak.json +0 -0
  54. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_npx.json +0 -0
  55. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_ome_tiff.json +0 -0
  56. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_out.json +0 -0
  57. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_pdf.json +0 -0
  58. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_png.json +0 -0
  59. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_rcc.json +0 -0
  60. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_rdata.json +0 -0
  61. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_rds.json +0 -0
  62. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_stats.json +0 -0
  63. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_tab.json +0 -0
  64. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_tbi.json +0 -0
  65. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_text.json +0 -0
  66. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_tiff.json +0 -0
  67. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_tsv.json +0 -0
  68. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_txt.json +0 -0
  69. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_vcf.json +0 -0
  70. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_vcf_gz.json +0 -0
  71. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_xlsx.json +0 -0
  72. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_yaml.json +0 -0
  73. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/artifacts/artifact_zip.json +0 -0
  74. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/atacseq_assay.json +0 -0
  75. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/antibody.json +0 -0
  76. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/assay_core.json +0 -0
  77. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/available_assays.json +0 -0
  78. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/available_ngs_analyses.json +0 -0
  79. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/composite_image.json +0 -0
  80. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/controls.json +0 -0
  81. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/enrichment_core.json +0 -0
  82. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/excluded_samples.json +0 -0
  83. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/hande_local_file.json +0 -0
  84. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/image.json +0 -0
  85. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/imaging/mif_entry.json +0 -0
  86. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/imaging/mif_export.json +0 -0
  87. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/imaging/mif_input.json +0 -0
  88. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/imaging/mif_roi.json +0 -0
  89. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/imaging_data.json +0 -0
  90. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/local_file.json +0 -0
  91. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mapping.json +0 -0
  92. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mibi_antibody.json +0 -0
  93. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mibi_imaging/mibi_input.json +0 -0
  94. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mif_antibody.json +0 -0
  95. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mihc_antibody.json +0 -0
  96. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/mihc_input.json +0 -0
  97. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/multiple_local_files.json +0 -0
  98. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/atacseq/atacseq_analysis.json +0 -0
  99. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json +0 -0
  100. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/fusion.json +0 -0
  101. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/microbiome.json +0 -0
  102. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/msisensor.json +0 -0
  103. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/neoantigen.json +0 -0
  104. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/rna_analysis.json +0 -0
  105. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/rna_level1_analysis.json +0 -0
  106. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json +0 -0
  107. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/salmon.json +0 -0
  108. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/star.json +0 -0
  109. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs/rna/trust4.json +0 -0
  110. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs_assay_core.json +0 -0
  111. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/ngs_assay_record.json +0 -0
  112. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/reads_core.json +0 -0
  113. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/reads_with_index.json +0 -0
  114. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/scrnaseq_input.json +0 -0
  115. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/scrnaseq_preamble.json +0 -0
  116. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/visium_input.json +0 -0
  117. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/components/visium_preamble.json +0 -0
  118. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/ctdna_assay.json +0 -0
  119. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/cytof_assay.json +0 -0
  120. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/cytof_assay_core.json +0 -0
  121. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/elisa_assay.json +0 -0
  122. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/hande_assay.json +0 -0
  123. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/ihc_assay.json +0 -0
  124. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/mibi_assay.json +0 -0
  125. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/microbiome_assay.json +0 -0
  126. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/mif_assay.json +0 -0
  127. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/mihc_assay.json +0 -0
  128. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/misc_data.json +0 -0
  129. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/nanostring_assay.json +0 -0
  130. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/olink_assay.json +0 -0
  131. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/rna_assay-v0.json +0 -0
  132. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/rna_assay.json +0 -0
  133. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/scrnaseq_analysis.json +0 -0
  134. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/scrnaseq_assay.json +0 -0
  135. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/tcr_analysis.json +0 -0
  136. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/tcr_assay.json +0 -0
  137. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/visium_analysis.json +0 -0
  138. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/visium_assay.json +0 -0
  139. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/wes_analysis.json +0 -0
  140. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/wes_assay.json +0 -0
  141. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/wes_core.json +0 -0
  142. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/assays/wes_tumor_only_analysis.json +0 -0
  143. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/clinical_data.json +0 -0
  144. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/clinical_trial.json +0 -0
  145. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/participant.json +0 -0
  146. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/sample.json +0 -0
  147. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/shipping_core.json +0 -0
  148. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/atacseq_analysis_template.json +0 -0
  149. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json +0 -0
  150. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json +0 -0
  151. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/scrnaseq_analysis_template.json +0 -0
  152. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/tcr_analysis_template.json +0 -0
  153. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/visium_analysis_template.json +0 -0
  154. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/wes_analysis_template.json +0 -0
  155. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/analyses/wes_tumor_only_analysis_template.json +0 -0
  156. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/atacseq_fastq_template.json +0 -0
  157. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/clinical_data_template.json +0 -0
  158. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/ctdna_template.json +0 -0
  159. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/cytof_template.json +0 -0
  160. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/elisa_template.json +0 -0
  161. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/hande_template.json +0 -0
  162. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/ihc_template.json +0 -0
  163. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/mibi_template.json +0 -0
  164. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/microbiome_template.json +0 -0
  165. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/mif_template.json +0 -0
  166. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/mihc_template.json +0 -0
  167. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/misc_data_template.json +0 -0
  168. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/nanostring_template.json +0 -0
  169. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/olink_template.json +0 -0
  170. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/rna_bam_template.json +0 -0
  171. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/rna_fastq_template.json +0 -0
  172. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/scrnaseq_template.json +0 -0
  173. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/tcr_adaptive_template.json +0 -0
  174. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/tcr_fastq_template.json +0 -0
  175. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/visium_template.json +0 -0
  176. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/wes_bam_template.json +0 -0
  177. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/assays/wes_fastq_template.json +0 -0
  178. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/h_and_e_template.json +0 -0
  179. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/microbiome_dna_template.json +0 -0
  180. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json +0 -0
  181. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json +0 -0
  182. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/pbmc_template.json +0 -0
  183. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/plasma_template.json +0 -0
  184. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/tissue_slide_template.json +0 -0
  185. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json +0 -0
  186. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json +0 -0
  187. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json +0 -0
  188. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/template_reader.py +0 -0
  189. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/template_writer.py +0 -0
  190. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/unprism.py +0 -0
  191. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/util.py +0 -0
  192. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/nci_cidc_schemas.egg-info/SOURCES.txt +0 -0
  193. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/nci_cidc_schemas.egg-info/dependency_links.txt +0 -0
  194. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/nci_cidc_schemas.egg-info/entry_points.txt +0 -0
  195. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/nci_cidc_schemas.egg-info/not-zip-safe +0 -0
  196. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/nci_cidc_schemas.egg-info/top_level.txt +0 -0
  197. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/setup.cfg +0 -0
  198. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/__init__.py +0 -0
  199. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/conftest.py +0 -0
  200. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/constants.py +0 -0
  201. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.1.csv +0 -0
  202. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.1.xlsx +0 -0
  203. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.2.bom.csv +0 -0
  204. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.2.csv +0 -0
  205. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.2.xlsx +0 -0
  206. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.3.xlsx +0 -0
  207. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinical_test_file.docx +0 -0
  208. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinicaltrial_examples/CT_1.json +0 -0
  209. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinicaltrial_examples/CT_1PA_multiWES.json +0 -0
  210. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinicaltrial_examples/CT_cytof_with_analysis.json +0 -0
  211. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinicaltrial_examples/CT_ihc.json +0 -0
  212. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/clinicaltrial_examples/CT_minimal.json +0 -0
  213. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/date_examples.xlsx +0 -0
  214. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/elisa_test_file.1.xlsx +0 -0
  215. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/elisa_test_file.2.xlsx +0 -0
  216. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/hande_err_template.xlsx +0 -0
  217. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/olink/invalid_olink_assay_1_NPX.xlsx +0 -0
  218. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/olink/olink_assay_1_NPX.xlsx +0 -0
  219. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/olink/olink_assay_2_NPX.xlsx +0 -0
  220. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/olink/olink_assay_combined.xlsx +0 -0
  221. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/pbmc_invalid.xlsx +0 -0
  222. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/pbmc_manifest_valid.xlsx +0 -0
  223. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/1.json +0 -0
  224. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/a.json +0 -0
  225. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/b.json +0 -0
  226. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/c.json +0 -0
  227. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/d1/3.json +0 -0
  228. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/d1/d2/2.json +0 -0
  229. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/invalid_ref.json +0 -0
  230. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/target-templates/atacseq_analysis_template.json +0 -0
  231. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/target-templates/rna_level1_analysis_template.json +0 -0
  232. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/target-templates/wes_analysis_template.json +0 -0
  233. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/schemas/target-templates/wes_tumor_only_analysis_template.json +0 -0
  234. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/tiny_invalid_manifest.xlsx +0 -0
  235. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/data/tiny_valid_manifest.xlsx +0 -0
  236. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/__init__.py +0 -0
  237. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/cidc_test_data/__init__.py +0 -0
  238. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/cidc_test_data/analysis_data.py +0 -0
  239. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/cidc_test_data/assay_data.py +0 -0
  240. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/cidc_test_data/manifest_data.py +0 -0
  241. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/cidc_test_data/utils.py +0 -0
  242. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/schema/test_schema.json +0 -0
  243. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_cidc_data_model.py +0 -0
  244. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_constants.py +0 -0
  245. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_extra_metadata.py +0 -0
  246. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_merger.py +0 -0
  247. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_pipelines.py +0 -0
  248. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_artifacts.py +0 -0
  249. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_assays.py +0 -0
  250. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_clinicaltrial_examples.py +0 -0
  251. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_json_validation.py +0 -0
  252. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_migrations.py +0 -0
  253. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_schemas.py +0 -0
  254. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_strict_meta_schema.py +0 -0
  255. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_template.py +0 -0
  256. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_template_reader.py +0 -0
  257. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_template_writer.py +0 -0
  258. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_templates.py +0 -0
  259. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_trial_core.py +0 -0
  260. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_unprism.py +0 -0
  261. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/test_util.py +0 -0
  262. {nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/utils/test_template_generator.py +0 -0
{nci_cidc_schemas-0.27.28/nci_cidc_schemas.egg-info → nci_cidc_schemas-0.28.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: nci_cidc_schemas
3
- Version: 0.27.28
3
+ Version: 0.28.0
4
4
  Summary: The CIDC data model and tools for working with it.
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-schemas
6
6
  Author: NCI
@@ -12,23 +12,20 @@ Classifier: Intended Audience :: Developers
12
12
  Classifier: License :: OSI Approved :: MIT License
13
13
  Classifier: Natural Language :: English
14
14
  Classifier: Programming Language :: Python :: 3.9
15
- Requires-Python: >=3.9,<3.11
15
+ Requires-Python: >=3.13,<3.14
16
16
  Description-Content-Type: text/markdown
17
17
  License-File: LICENSE
18
- Requires-Dist: dateparser==1.1.4
19
- Requires-Dist: xlsxwriter==1.1.6
20
- Requires-Dist: argparse==1.1
21
- Requires-Dist: pyyaml==6.0.1
22
- Requires-Dist: jsonschema==3.0.1
23
- Requires-Dist: openpyxl==3.0.7
18
+ Requires-Dist: argparse==1.4.0
19
+ Requires-Dist: dateparser==1.2.2
20
+ Requires-Dist: deepdiff==4.3.0
21
+ Requires-Dist: jinja2==3.1.6
24
22
  Requires-Dist: jsonmerge==1.6.1
25
- Requires-Dist: deepdiff~=4.3.0
26
- Requires-Dist: jsonpointer==2.0
27
- Requires-Dist: pandas==1.5.3
28
- Requires-Dist: jinja2~=3.1.3
29
- Requires-Dist: nci-cidc-ngs-pipeline-api==0.1.25
30
- Requires-Dist: markupsafe==2.1.5
31
- Requires-Dist: regex==2022.3.2
23
+ Requires-Dist: jsonpointer==3.0.0
24
+ Requires-Dist: jsonschema==3.2.0
25
+ Requires-Dist: openpyxl==3.1.5
26
+ Requires-Dist: pandas==2.3.1
27
+ Requires-Dist: pyyaml==6.0.2
28
+ Requires-Dist: xlsxwriter==3.2.5
32
29
  Dynamic: author
33
30
  Dynamic: author-email
34
31
  Dynamic: classifier
{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/__init__.py RENAMED
@@ -2,4 +2,4 @@
2
2
 
3
3
  __author__ = """NCI"""
4
4
  __email__ = "nci-cidc-tools-admin@mail.nih.gov"
5
- __version__ = "0.27.28"
5
+ __version__ = "0.28.0"
{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/json_validation.py RENAMED
@@ -273,8 +273,7 @@ def _map_refs(node: dict, on_refs: Callable[[str], dict]) -> dict:
273
273
  # So we raise on that, to notify schema creator that s/he should not
274
274
  # expect those additional keys to be verified by schema validator.
275
275
  raise Exception(
276
- f"Schema node with '$ref' should not contain anything else besides 'description' for public docs (or '$comment' for dev docs). \
277
- \nOn: {node} \nOffending keys {extra_keys}"
276
+ f"Schema node with '$ref' should not contain anything else besides 'description' for public docs (or '$comment' for dev docs). \nOn: {node} \nOffending keys {extra_keys}"
278
277
  )
279
278
 
280
279
  # We found a ref, so return it mapped through `on_refs`
{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/cidc_schemas/template.py RENAMED
@@ -25,7 +25,7 @@ from .constants import ANALYSIS_TEMPLATE_DIR, SCHEMA_DIR, TEMPLATE_DIR
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  from .json_validation import _load_dont_validate_schema
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  from .util import get_file_ext, get_logger
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- from cidc_ngs_pipeline_api import OUTPUT_APIS
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+ from .ngs_pipeline_api import OUTPUT_APIS
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  logger = get_logger("cidc_schemas.template")
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{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0/nci_cidc_schemas.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
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  Name: nci_cidc_schemas
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- Version: 0.27.28
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+ Version: 0.28.0
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  Summary: The CIDC data model and tools for working with it.
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  Home-page: https://github.com/NCI-CIDC/cidc-schemas
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  Author: NCI
@@ -12,23 +12,20 @@ Classifier: Intended Audience :: Developers
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Natural Language :: English
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  Classifier: Programming Language :: Python :: 3.9
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- Requires-Python: >=3.9,<3.11
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+ Requires-Python: >=3.13,<3.14
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: dateparser==1.1.4
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- Requires-Dist: xlsxwriter==1.1.6
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- Requires-Dist: argparse==1.1
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- Requires-Dist: pyyaml==6.0.1
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- Requires-Dist: jsonschema==3.0.1
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- Requires-Dist: openpyxl==3.0.7
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+ Requires-Dist: argparse==1.4.0
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+ Requires-Dist: dateparser==1.2.2
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+ Requires-Dist: deepdiff==4.3.0
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+ Requires-Dist: jinja2==3.1.6
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22
  Requires-Dist: jsonmerge==1.6.1
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- Requires-Dist: deepdiff~=4.3.0
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- Requires-Dist: jsonpointer==2.0
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- Requires-Dist: pandas==1.5.3
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- Requires-Dist: jinja2~=3.1.3
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- Requires-Dist: nci-cidc-ngs-pipeline-api==0.1.25
30
- Requires-Dist: markupsafe==2.1.5
31
- Requires-Dist: regex==2022.3.2
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+ Requires-Dist: jsonpointer==3.0.0
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+ Requires-Dist: jsonschema==3.2.0
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+ Requires-Dist: openpyxl==3.1.5
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+ Requires-Dist: pandas==2.3.1
27
+ Requires-Dist: pyyaml==6.0.2
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+ Requires-Dist: xlsxwriter==3.2.5
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  Dynamic: author
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  Dynamic: author-email
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  Dynamic: classifier
nci_cidc_schemas-0.28.0/nci_cidc_schemas.egg-info/requires.txt ADDED
@@ -0,0 +1,11 @@
1
+ argparse==1.4.0
2
+ dateparser==1.2.2
3
+ deepdiff==4.3.0
4
+ jinja2==3.1.6
5
+ jsonmerge==1.6.1
6
+ jsonpointer==3.0.0
7
+ jsonschema==3.2.0
8
+ openpyxl==3.1.5
9
+ pandas==2.3.1
10
+ pyyaml==6.0.2
11
+ xlsxwriter==3.2.5
nci_cidc_schemas-0.28.0/requirements.txt ADDED
@@ -0,0 +1,11 @@
1
+ argparse==1.4.0
2
+ dateparser==1.2.2
3
+ deepdiff==4.3.0
4
+ jinja2==3.1.6
5
+ jsonmerge==1.6.1 # TODO: 1.9.2
6
+ jsonpointer==3.0.0
7
+ jsonschema==3.2.0 # TODO: 4.25.0
8
+ openpyxl==3.1.5
9
+ pandas==2.3.1
10
+ pyyaml==6.0.2
11
+ xlsxwriter==3.2.5
{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/setup.py RENAMED
@@ -24,7 +24,7 @@ setup(
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  "Programming Language :: Python :: 3.9",
25
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  ],
26
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  description="The CIDC data model and tools for working with it.",
27
- python_requires=">=3.9,<3.11",
27
+ python_requires=">=3.13,<3.14",
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28
  install_requires=requirements,
29
29
  license="MIT license",
30
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  long_description=readme,
{nci_cidc_schemas-0.27.28 → nci_cidc_schemas-0.28.0}/tests/prism/test_core.py RENAMED
@@ -1,6 +1,6 @@
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  """Tests for generic prismification functionality.
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2
 
3
- TODO: some of these tests currently use the CIDC data model, but they
3
+ TODO: some of these tests currently use the CIDC data model, but they
4
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  should probably use an unrelated test data model instead.
5
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  """
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nci_cidc_schemas-0.27.28/nci_cidc_schemas.egg-info/requires.txt DELETED
@@ -1,14 +0,0 @@
1
- dateparser==1.1.4
2
- xlsxwriter==1.1.6
3
- argparse==1.1
4
- pyyaml==6.0.1
5
- jsonschema==3.0.1
6
- openpyxl==3.0.7
7
- jsonmerge==1.6.1
8
- deepdiff~=4.3.0
9
- jsonpointer==2.0
10
- pandas==1.5.3
11
- jinja2~=3.1.3
12
- nci-cidc-ngs-pipeline-api==0.1.25
13
- markupsafe==2.1.5
14
- regex==2022.3.2
nci_cidc_schemas-0.27.28/requirements.txt DELETED
@@ -1,14 +0,0 @@
1
- dateparser==1.1.4
2
- xlsxwriter==1.1.6
3
- argparse==1.1
4
- pyyaml==6.0.1
5
- jsonschema==3.0.1
6
- openpyxl==3.0.7
7
- jsonmerge==1.6.1
8
- deepdiff~=4.3.0
9
- jsonpointer==2.0
10
- pandas==1.5.3
11
- jinja2~=3.1.3
12
- nci-cidc-ngs-pipeline-api==0.1.25
13
- markupsafe==2.1.5
14
- regex==2022.3.2