nci-cidc-api-modules 1.2.5__tar.gz → 1.2.6__tar.gz

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Files changed (34) hide show
  1. {nci_cidc_api_modules-1.2.5/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.6}/PKG-INFO +15 -15
  2. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6/nci_cidc_api_modules.egg-info}/PKG-INFO +15 -15
  3. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/requires.txt +14 -14
  4. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/requirements.modules.txt +16 -14
  5. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/tests/test_api.py +4 -0
  6. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/LICENSE +0 -0
  7. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/MANIFEST.in +0 -0
  8. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/README.md +0 -0
  9. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/config/__init__.py +0 -0
  10. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/config/db.py +0 -0
  11. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/config/logging.py +0 -0
  12. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/config/secrets.py +0 -0
  13. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/config/settings.py +0 -0
  14. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/__init__.py +0 -0
  15. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/files/__init__.py +0 -0
  16. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/files/details.py +0 -0
  17. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/files/facets.py +0 -0
  18. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/migrations.py +0 -0
  19. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/models.py +0 -0
  20. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/models/schemas.py +0 -0
  21. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/__init__.py +0 -0
  22. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/auth.py +0 -0
  23. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/emails.py +0 -0
  24. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/file_handling.py +0 -0
  25. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/gcloud_client.py +0 -0
  26. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/jose.py +0 -0
  27. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/cidc_api/shared/rest_utils.py +0 -0
  28. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  29. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  30. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  31. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  32. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/pyproject.toml +0 -0
  33. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/setup.cfg +0 -0
  34. {nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/setup.py +0 -0
{nci_cidc_api_modules-1.2.5/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.6}/PKG-INFO RENAMED
@@ -1,35 +1,35 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.5
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+ Version: 1.2.6
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
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  Requires-Python: >=3.13
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: werkzeug>=3.1.3
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+ Requires-Dist: certifi>=2025.8.3
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+ Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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  Requires-Dist: flask>=3.1.2
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  Requires-Dist: flask-migrate>=4.1.0
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  Requires-Dist: flask-sqlalchemy>=3.1.1
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- Requires-Dist: sqlalchemy>=2.0.43
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+ Requires-Dist: google-auth>=2.41.0
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+ Requires-Dist: google-api-python-client>=2.183.0
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+ Requires-Dist: google-cloud-bigquery>=3.38.0
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+ Requires-Dist: google-cloud-pubsub>=2.31.1
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+ Requires-Dist: google-cloud-secret-manager>=2.24.0
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+ Requires-Dist: google-cloud-storage>=3.4.0
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+ Requires-Dist: jinja2>=3.1.6
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  Requires-Dist: marshmallow>=4.0.0
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  Requires-Dist: marshmallow-sqlalchemy>=1.4.2
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- Requires-Dist: google-cloud-storage>=3.3.0
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- Requires-Dist: google-cloud-secret-manager>=2.24.0
19
- Requires-Dist: google-cloud-pubsub>=2.31.1
20
- Requires-Dist: google-cloud-bigquery>=3.36.0
21
- Requires-Dist: google-api-python-client>=2.179.0
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- Requires-Dist: google-auth>=2.40.3
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+ Requires-Dist: numpy>=2.3.2
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  Requires-Dist: packaging>=25.0
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+ Requires-Dist: pandas>=2.3.3
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  Requires-Dist: pyarrow>=21.0.0
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- Requires-Dist: numpy>=2.3.2
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- Requires-Dist: pandas>=2.3.1
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  Requires-Dist: python-dotenv>=1.1.1
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  Requires-Dist: requests>=2.32.5
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- Requires-Dist: jinja2>=3.1.6
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- Requires-Dist: certifi>=2025.8.3
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- Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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- Requires-Dist: nci-cidc-schemas==0.28.5
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+ Requires-Dist: sqlalchemy>=2.0.43
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+ Requires-Dist: werkzeug>=3.1.3
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+ Requires-Dist: nci-cidc-schemas==0.28.6
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,35 +1,35 @@
1
1
  Metadata-Version: 2.4
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2
  Name: nci_cidc_api_modules
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- Version: 1.2.5
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+ Version: 1.2.6
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
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  Requires-Python: >=3.13
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: werkzeug>=3.1.3
10
+ Requires-Dist: certifi>=2025.8.3
11
+ Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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  Requires-Dist: flask>=3.1.2
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  Requires-Dist: flask-migrate>=4.1.0
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  Requires-Dist: flask-sqlalchemy>=3.1.1
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- Requires-Dist: sqlalchemy>=2.0.43
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+ Requires-Dist: google-auth>=2.41.0
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+ Requires-Dist: google-api-python-client>=2.183.0
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+ Requires-Dist: google-cloud-bigquery>=3.38.0
18
+ Requires-Dist: google-cloud-pubsub>=2.31.1
19
+ Requires-Dist: google-cloud-secret-manager>=2.24.0
20
+ Requires-Dist: google-cloud-storage>=3.4.0
21
+ Requires-Dist: jinja2>=3.1.6
15
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  Requires-Dist: marshmallow>=4.0.0
16
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  Requires-Dist: marshmallow-sqlalchemy>=1.4.2
17
- Requires-Dist: google-cloud-storage>=3.3.0
18
- Requires-Dist: google-cloud-secret-manager>=2.24.0
19
- Requires-Dist: google-cloud-pubsub>=2.31.1
20
- Requires-Dist: google-cloud-bigquery>=3.36.0
21
- Requires-Dist: google-api-python-client>=2.179.0
22
- Requires-Dist: google-auth>=2.40.3
24
+ Requires-Dist: numpy>=2.3.2
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  Requires-Dist: packaging>=25.0
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+ Requires-Dist: pandas>=2.3.3
24
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  Requires-Dist: pyarrow>=21.0.0
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- Requires-Dist: numpy>=2.3.2
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- Requires-Dist: pandas>=2.3.1
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  Requires-Dist: python-dotenv>=1.1.1
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  Requires-Dist: requests>=2.32.5
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- Requires-Dist: jinja2>=3.1.6
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- Requires-Dist: certifi>=2025.8.3
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- Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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- Requires-Dist: nci-cidc-schemas==0.28.5
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+ Requires-Dist: sqlalchemy>=2.0.43
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+ Requires-Dist: werkzeug>=3.1.3
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+ Requires-Dist: nci-cidc-schemas==0.28.6
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -1,23 +1,23 @@
1
- werkzeug>=3.1.3
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+ certifi>=2025.8.3
2
+ cloud-sql-python-connector[pg8000]>=1.18.4
2
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  flask>=3.1.2
3
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  flask-migrate>=4.1.0
4
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  flask-sqlalchemy>=3.1.1
5
- sqlalchemy>=2.0.43
6
+ google-auth>=2.41.0
7
+ google-api-python-client>=2.183.0
8
+ google-cloud-bigquery>=3.38.0
9
+ google-cloud-pubsub>=2.31.1
10
+ google-cloud-secret-manager>=2.24.0
11
+ google-cloud-storage>=3.4.0
12
+ jinja2>=3.1.6
6
13
  marshmallow>=4.0.0
7
14
  marshmallow-sqlalchemy>=1.4.2
8
- google-cloud-storage>=3.3.0
9
- google-cloud-secret-manager>=2.24.0
10
- google-cloud-pubsub>=2.31.1
11
- google-cloud-bigquery>=3.36.0
12
- google-api-python-client>=2.179.0
13
- google-auth>=2.40.3
15
+ numpy>=2.3.2
14
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  packaging>=25.0
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+ pandas>=2.3.3
15
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  pyarrow>=21.0.0
16
- numpy>=2.3.2
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- pandas>=2.3.1
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  python-dotenv>=1.1.1
19
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  requests>=2.32.5
20
- jinja2>=3.1.6
21
- certifi>=2025.8.3
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- cloud-sql-python-connector[pg8000]>=1.18.4
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- nci-cidc-schemas==0.28.5
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+ sqlalchemy>=2.0.43
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+ werkzeug>=3.1.3
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+ nci-cidc-schemas==0.28.6
{nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/requirements.modules.txt RENAMED
@@ -1,23 +1,25 @@
1
- werkzeug>=3.1.3
1
+ certifi>=2025.8.3
2
+ cloud-sql-python-connector[pg8000]>=1.18.4
2
3
  flask>=3.1.2
3
4
  flask-migrate>=4.1.0
4
5
  flask-sqlalchemy>=3.1.1
5
- sqlalchemy>=2.0.43
6
+ google-auth>=2.41.0
7
+ google-api-python-client>=2.183.0
8
+ google-cloud-bigquery>=3.38.0
9
+ google-cloud-pubsub>=2.31.1
10
+ google-cloud-secret-manager>=2.24.0
11
+ google-cloud-storage>=3.4.0
12
+ jinja2>=3.1.6
6
13
  marshmallow>=4.0.0
7
14
  marshmallow-sqlalchemy>=1.4.2
8
- google-cloud-storage>=3.3.0
9
- google-cloud-secret-manager>=2.24.0
10
- google-cloud-pubsub>=2.31.1
11
- google-cloud-bigquery>=3.36.0
12
- google-api-python-client>=2.179.0
13
- google-auth>=2.40.3
15
+ numpy>=2.3.2
14
16
  packaging>=25.0
17
+ pandas>=2.3.3
15
18
  pyarrow>=21.0.0
16
- numpy>=2.3.2
17
- pandas>=2.3.1
18
19
  python-dotenv>=1.1.1
19
20
  requests>=2.32.5
20
- jinja2>=3.1.6
21
- certifi>=2025.8.3
22
- cloud-sql-python-connector[pg8000]>=1.18.4
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- nci-cidc-schemas==0.28.5
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+ sqlalchemy>=2.0.43
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+ werkzeug>=3.1.3
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+
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+ # cidc deps
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+ nci-cidc-schemas==0.28.6
{nci_cidc_api_modules-1.2.5 → nci_cidc_api_modules-1.2.6}/tests/test_api.py RENAMED
@@ -257,6 +257,10 @@ def test_resource_and_item_get(resource, config, cidc_api, clean_db, monkeypatch
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  if "GET" in config["allowed_methods"]:
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  assert response.status_code == 200
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  item = response.json["_items"][0]
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+ # With the admin user, there's a chance that the first user is not the user we want.
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+ # This line ensures we get the sample user and not the admin user
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+ if resource == "users":
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+ item = next((user for user in response.json["_items"] if user["email"] == "test-admin@example.com"), None)
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  # trial_metadata is an exception - it prunes metadata_json
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  # on resource-level GET queries
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  if resource == "trial_metadata":