nci-cidc-api-modules 1.2.3__tar.gz → 1.2.5__tar.gz

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Files changed (34) hide show
  1. {nci_cidc_api_modules-1.2.3/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.5}/PKG-INFO +2 -2
  2. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/files/facets.py +10 -0
  3. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/models.py +1 -0
  4. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5/nci_cidc_api_modules.egg-info}/PKG-INFO +2 -2
  5. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/requires.txt +1 -1
  6. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/requirements.modules.txt +1 -1
  7. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/LICENSE +0 -0
  8. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/MANIFEST.in +0 -0
  9. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/README.md +0 -0
  10. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/config/__init__.py +0 -0
  11. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/config/db.py +0 -0
  12. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/config/logging.py +0 -0
  13. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/config/secrets.py +0 -0
  14. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/config/settings.py +0 -0
  15. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/__init__.py +0 -0
  16. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/files/__init__.py +0 -0
  17. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/files/details.py +0 -0
  18. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/migrations.py +0 -0
  19. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/schemas.py +0 -0
  20. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/__init__.py +0 -0
  21. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/auth.py +0 -0
  22. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/emails.py +0 -0
  23. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/file_handling.py +0 -0
  24. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/gcloud_client.py +0 -0
  25. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/jose.py +0 -0
  26. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/shared/rest_utils.py +0 -0
  27. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  28. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  29. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  30. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  31. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/pyproject.toml +0 -0
  32. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/setup.cfg +0 -0
  33. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/setup.py +0 -0
  34. {nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.2.3/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.3
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+ Version: 1.2.5
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -29,7 +29,7 @@ Requires-Dist: requests>=2.32.5
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  Requires-Dist: jinja2>=3.1.6
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  Requires-Dist: certifi>=2025.8.3
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  Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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- Requires-Dist: nci-cidc-schemas==0.28.3
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+ Requires-Dist: nci-cidc-schemas==0.28.5
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/files/facets.py RENAMED
@@ -366,6 +366,16 @@ assay_facets: Facets = {
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  "NPQ File": FacetConfig(["/nulisa/npq_file.csv", "NPQ file for NULISA run"]),
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  "Raw Counts File": FacetConfig(["/nulisa/raw_counts_file.csv", "Raw counts file for NULISA run"]),
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  },
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+ "MALDI Glycan": {
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+ "Metadata": FacetConfig(["/maldi_glycan/metadata.tsv", "Metadata for a MALDI Glycan run"]),
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+ "Molecular Assignments File": FacetConfig(
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+ ["/maldi_glycan/molecular_assignments.tsv", "Molecular Assignments file for a MALDI Glycan run"]
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+ ),
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+ "IBD File": FacetConfig(["/maldi_glycan/ibd_file.ibd", "IBD file for MALDI Glycan run"]),
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+ "IMZML File": FacetConfig(["/maldi_glycan/imzml_file.imzml", "IMZML file for MALDI Glycan run"]),
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+ "Channels": FacetConfig(["/maldi_glycan/channels.csv", "Channels csv file for MALDI Glycan run"]),
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+ "Tiff Zip": FacetConfig(["/maldi_glycan/tiff.zip", "Tiff zip for MALDI Glycan run"]),
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+ },
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  "mIHC": {
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  "Samples Report": FacetConfig(["/mihc/sample_report.csv"], "Samples report for mIHC run"),
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  "Multitiffs": FacetConfig(["/mihc/multitiffs.tar.gz"], "Multi Tiffs file from mIHC run"),
{nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/cidc_api/models/models.py RENAMED
@@ -3432,6 +3432,7 @@ class IngestionJobs(CommonColumns):
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  version = Column(Integer, nullable=False)
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  pending = Column(Boolean, nullable=False, default=False)
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  start_date = Column(DateTime, nullable=True)
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+ error_status = Column(String, nullable=True)
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  @staticmethod
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  @with_default_session
{nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.3
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+ Version: 1.2.5
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -29,7 +29,7 @@ Requires-Dist: requests>=2.32.5
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  Requires-Dist: jinja2>=3.1.6
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  Requires-Dist: certifi>=2025.8.3
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  Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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- Requires-Dist: nci-cidc-schemas==0.28.3
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+ Requires-Dist: nci-cidc-schemas==0.28.5
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -20,4 +20,4 @@ requests>=2.32.5
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  jinja2>=3.1.6
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  certifi>=2025.8.3
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  cloud-sql-python-connector[pg8000]>=1.18.4
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- nci-cidc-schemas==0.28.3
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+ nci-cidc-schemas==0.28.5
{nci_cidc_api_modules-1.2.3 → nci_cidc_api_modules-1.2.5}/requirements.modules.txt RENAMED
@@ -20,4 +20,4 @@ requests>=2.32.5
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  jinja2>=3.1.6
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  certifi>=2025.8.3
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  cloud-sql-python-connector[pg8000]>=1.18.4
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- nci-cidc-schemas==0.28.3
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+ nci-cidc-schemas==0.28.5