nci-cidc-api-modules 1.2.25__tar.gz → 1.2.28__tar.gz

{nci_cidc_api_modules-1.2.25/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.28}/PKG-INFO

@@ -1,30 +1,31 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.25
+Version: 1.2.28
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
 Requires-Python: >=3.13
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: certifi>=2025.10.5
+Requires-Dist: certifi>=2025.11.12
 Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.5
 Requires-Dist: flask>=3.1.2
 Requires-Dist: flask-migrate>=4.1.0
 Requires-Dist: flask-sqlalchemy>=3.1.1
-Requires-Dist: google-auth==2.41.1
+Requires-Dist: google-auth==2.43.0
 Requires-Dist: google-api-python-client>=2.185.0
 Requires-Dist: google-cloud-bigquery>=3.38.0
-Requires-Dist: google-cloud-pubsub>=2.32.0
+Requires-Dist: google-cloud-pubsub>=2.33.0
 Requires-Dist: google-cloud-secret-manager>=2.25.0
-Requires-Dist: google-cloud-storage>=3.4.1
+Requires-Dist: google-cloud-storage>=3.6.0
 Requires-Dist: jinja2>=3.1.6
-Requires-Dist: marshmallow>=4.0.1
+Requires-Dist: marshmallow>=4.1.0
 Requires-Dist: marshmallow-sqlalchemy>=1.4.2
-Requires-Dist: numpy>=2.3.4
+Requires-Dist: numpy>=2.3.5
 Requires-Dist: packaging>=25.0
 Requires-Dist: pandas>=2.3.3
 Requires-Dist: pyarrow>=22.0.0
+Requires-Dist: pydantic~=2.12.4
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: requests>=2.32.5
 Requires-Dist: sqlalchemy>=2.0.44

nci_cidc_api_modules-1.2.28/cidc_api/reference/ctcae.py

@@ -0,0 +1,34 @@
+# Stubbed to accept any string
+def is_ctcae_event_term(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Stubbed to accept any string
+def is_ctcae_event_code(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Stubbed to accept any string
+def is_ctcae_severity_grade(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Stubbed to accept any string
+def is_ctcae_system_organ_class(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Determines if the CTCAE term is one of the "Other, specify" types of terms for which we include
+# additional data about the AE.
+def is_ctcae_other_term(v):
+    if isinstance(v, str):
+        return "Other, specify" in v
+    return False

nci_cidc_api_modules-1.2.28/cidc_api/reference/gvhd.py

@@ -0,0 +1,6 @@
+# Stubbed to accept any string
+# Should support MAGIC and Modified Glucksberg
+def is_gvhd_organ(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v

nci_cidc_api_modules-1.2.28/cidc_api/reference/icd10cm.py

@@ -0,0 +1,12 @@
+# Stubbed to accept any string
+def is_ICD10CM_code(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Stubbed to accept any string
+def is_ICD10CM_term(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v

nci_cidc_api_modules-1.2.28/cidc_api/reference/icdo3.py

@@ -0,0 +1,12 @@
+# Stubbed to accept any string
+def is_ICDO3_code(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v
+
+
+# Stubbed to accept any string
+def is_ICDO3_term(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v

nci_cidc_api_modules-1.2.28/cidc_api/reference/uberon.py

@@ -0,0 +1,5 @@
+# Stubbed to accept any string
+def is_uberon_term(v):
+    if not isinstance(v, str):
+        raise TypeError("Value must be a string")
+    return v

{nci_cidc_api_modules-1.2.25 → nci_cidc_api_modules-1.2.28/nci_cidc_api_modules.egg-info}/PKG-INFO

@@ -1,30 +1,31 @@
 Metadata-Version: 2.4
 Name: nci_cidc_api_modules
-Version: 1.2.25
+Version: 1.2.28
 Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
 Home-page: https://github.com/NCI-CIDC/cidc-api-gae
 License: MIT license
 Requires-Python: >=3.13
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: certifi>=2025.10.5
+Requires-Dist: certifi>=2025.11.12
 Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.5
 Requires-Dist: flask>=3.1.2
 Requires-Dist: flask-migrate>=4.1.0
 Requires-Dist: flask-sqlalchemy>=3.1.1
-Requires-Dist: google-auth==2.41.1
+Requires-Dist: google-auth==2.43.0
 Requires-Dist: google-api-python-client>=2.185.0
 Requires-Dist: google-cloud-bigquery>=3.38.0
-Requires-Dist: google-cloud-pubsub>=2.32.0
+Requires-Dist: google-cloud-pubsub>=2.33.0
 Requires-Dist: google-cloud-secret-manager>=2.25.0
-Requires-Dist: google-cloud-storage>=3.4.1
+Requires-Dist: google-cloud-storage>=3.6.0
 Requires-Dist: jinja2>=3.1.6
-Requires-Dist: marshmallow>=4.0.1
+Requires-Dist: marshmallow>=4.1.0
 Requires-Dist: marshmallow-sqlalchemy>=1.4.2
-Requires-Dist: numpy>=2.3.4
+Requires-Dist: numpy>=2.3.5
 Requires-Dist: packaging>=25.0
 Requires-Dist: pandas>=2.3.3
 Requires-Dist: pyarrow>=22.0.0
+Requires-Dist: pydantic~=2.12.4
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: requests>=2.32.5
 Requires-Dist: sqlalchemy>=2.0.44

{nci_cidc_api_modules-1.2.25 → nci_cidc_api_modules-1.2.28}/nci_cidc_api_modules.egg-info/SOURCES.txt

@@ -94,6 +94,11 @@ cidc_api/models/pydantic/stage2/surgery.py
 cidc_api/models/pydantic/stage2/therapy_agent_dose.py
 cidc_api/models/pydantic/stage2/treatment.py
 cidc_api/models/pydantic/stage2/trial.py
+cidc_api/reference/ctcae.py
+cidc_api/reference/gvhd.py
+cidc_api/reference/icd10cm.py
+cidc_api/reference/icdo3.py
+cidc_api/reference/uberon.py
 cidc_api/shared/__init__.py
 cidc_api/shared/auth.py
 cidc_api/shared/email_layout.html

{nci_cidc_api_modules-1.2.25 → nci_cidc_api_modules-1.2.28}/nci_cidc_api_modules.egg-info/requires.txt

@@ -1,21 +1,22 @@
-certifi>=2025.10.5
+certifi>=2025.11.12
 cloud-sql-python-connector[pg8000]>=1.18.5
 flask>=3.1.2
 flask-migrate>=4.1.0
 flask-sqlalchemy>=3.1.1
-google-auth==2.41.1
+google-auth==2.43.0
 google-api-python-client>=2.185.0
 google-cloud-bigquery>=3.38.0
-google-cloud-pubsub>=2.32.0
+google-cloud-pubsub>=2.33.0
 google-cloud-secret-manager>=2.25.0
-google-cloud-storage>=3.4.1
+google-cloud-storage>=3.6.0
 jinja2>=3.1.6
-marshmallow>=4.0.1
+marshmallow>=4.1.0
 marshmallow-sqlalchemy>=1.4.2
-numpy>=2.3.4
+numpy>=2.3.5
 packaging>=25.0
 pandas>=2.3.3
 pyarrow>=22.0.0
+pydantic~=2.12.4
 python-dotenv>=1.2.1
 requests>=2.32.5
 sqlalchemy>=2.0.44

{nci_cidc_api_modules-1.2.25 → nci_cidc_api_modules-1.2.28}/requirements.modules.txt

@@ -1,21 +1,22 @@
-certifi>=2025.10.5
+certifi>=2025.11.12
 cloud-sql-python-connector[pg8000]>=1.18.5
 flask>=3.1.2
 flask-migrate>=4.1.0
 flask-sqlalchemy>=3.1.1
-google-auth==2.41.1 # There is a bug in 2.42.X that causes local to fail when connecting to dev
+google-auth==2.43.0 # There is a bug in 2.42.X that causes local to fail when connecting to dev, if still there downgrade to 2.41.1
 google-api-python-client>=2.185.0
 google-cloud-bigquery>=3.38.0
-google-cloud-pubsub>=2.32.0
+google-cloud-pubsub>=2.33.0
 google-cloud-secret-manager>=2.25.0
-google-cloud-storage>=3.4.1
+google-cloud-storage>=3.6.0
 jinja2>=3.1.6
-marshmallow>=4.0.1
+marshmallow>=4.1.0
 marshmallow-sqlalchemy>=1.4.2
-numpy>=2.3.4
+numpy>=2.3.5
 packaging>=25.0
 pandas>=2.3.3
 pyarrow>=22.0.0
+pydantic~=2.12.4
 python-dotenv>=1.2.1
 requests>=2.32.5
 sqlalchemy>=2.0.44

{nci_cidc_api_modules-1.2.25 → nci_cidc_api_modules-1.2.28}/setup.py

@@ -14,6 +14,7 @@ packages = [
     "cidc_api.config",
     "cidc_api.models",
     "cidc_api.shared",
+    "cidc_api.reference",
 ]
 packages += find_namespace_packages(include=["cidc_api.models.*"])
 print(packages)