nci-cidc-api-modules 1.2.24__tar.gz → 1.2.26__tar.gz

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Files changed (114) hide show
  1. {nci_cidc_api_modules-1.2.24/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.26}/PKG-INFO +3 -2
  2. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/files/facets.py +3 -3
  3. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26/nci_cidc_api_modules.egg-info}/PKG-INFO +3 -2
  4. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/requires.txt +2 -1
  5. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/requirements.modules.txt +2 -1
  6. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/LICENSE +0 -0
  7. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/MANIFEST.in +0 -0
  8. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/README.md +0 -0
  9. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/config/__init__.py +0 -0
  10. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/config/db.py +0 -0
  11. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/config/logging.py +0 -0
  12. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/config/secrets.py +0 -0
  13. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/config/settings.py +0 -0
  14. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/__init__.py +0 -0
  15. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/data.py +0 -0
  16. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/base_orm.py +0 -0
  17. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/__init__.py +0 -0
  18. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/additional_treatment_orm.py +0 -0
  19. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/administrative_person_orm.py +0 -0
  20. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/administrative_role_assignment_orm.py +0 -0
  21. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/adverse_event_orm.py +0 -0
  22. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/arm_orm.py +0 -0
  23. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/baseline_clinical_assessment_orm.py +0 -0
  24. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/cohort_orm.py +0 -0
  25. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/comorbidity_orm.py +0 -0
  26. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/consent_group_orm.py +0 -0
  27. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/contact_orm.py +0 -0
  28. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/demographic_orm.py +0 -0
  29. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/disease_orm.py +0 -0
  30. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/exposure_orm.py +0 -0
  31. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/file_orm.py +0 -0
  32. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/gvhd_diagnosis_acute_orm.py +0 -0
  33. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/gvhd_diagnosis_chronic_orm.py +0 -0
  34. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/gvhd_organ_acute_orm.py +0 -0
  35. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/gvhd_organ_chronic_orm.py +0 -0
  36. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/institution_orm.py +0 -0
  37. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/medical_history_orm.py +0 -0
  38. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/other_clinical_endpoint_orm.py +0 -0
  39. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/other_malignancy_orm.py +0 -0
  40. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/participant_orm.py +0 -0
  41. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/prior_treatment_orm.py +0 -0
  42. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/publication_orm.py +0 -0
  43. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/radiotherapy_dose_orm.py +0 -0
  44. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/response_by_system_orm.py +0 -0
  45. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/response_orm.py +0 -0
  46. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/shipment_orm.py +0 -0
  47. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/shipment_specimen_orm.py +0 -0
  48. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/specimen_orm.py +0 -0
  49. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/stem_cell_transplant_orm.py +0 -0
  50. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/surgery_orm.py +0 -0
  51. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/therapy_agent_dose_orm.py +0 -0
  52. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/treatment_orm.py +0 -0
  53. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/db/stage2/trial_orm.py +0 -0
  54. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/files/__init__.py +0 -0
  55. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/files/details.py +0 -0
  56. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/migrations.py +0 -0
  57. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/models.py +0 -0
  58. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/__init__.py +0 -0
  59. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/additional_treatment.py +0 -0
  60. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/administrative_person.py +0 -0
  61. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/administrative_role_assignment.py +0 -0
  62. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/adverse_event.py +0 -0
  63. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/arm.py +0 -0
  64. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/base.py +0 -0
  65. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/baseline_clinical_assessment.py +0 -0
  66. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/cohort.py +0 -0
  67. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/comorbidity.py +0 -0
  68. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/consent_group.py +0 -0
  69. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/contact.py +0 -0
  70. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/demographic.py +0 -0
  71. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/disease.py +0 -0
  72. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/exposure.py +0 -0
  73. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/file.py +0 -0
  74. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/gvhd_diagnosis_acute.py +0 -0
  75. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/gvhd_diagnosis_chronic.py +0 -0
  76. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/gvhd_organ_acute.py +0 -0
  77. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/gvhd_organ_chronic.py +0 -0
  78. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/institution.py +0 -0
  79. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/medical_history.py +0 -0
  80. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/other_clinical_endpoint.py +0 -0
  81. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/other_malignancy.py +0 -0
  82. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/participant.py +0 -0
  83. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/prior_treatment.py +0 -0
  84. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/publication.py +0 -0
  85. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/radiotherapy_dose.py +0 -0
  86. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/response.py +0 -0
  87. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/response_by_system.py +0 -0
  88. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/shipment.py +0 -0
  89. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/shipment_specimen.py +0 -0
  90. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/specimen.py +0 -0
  91. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/stem_cell_transplant.py +0 -0
  92. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/surgery.py +0 -0
  93. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/therapy_agent_dose.py +0 -0
  94. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/treatment.py +0 -0
  95. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/pydantic/stage2/trial.py +0 -0
  96. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/schemas.py +0 -0
  97. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/types.py +0 -0
  98. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/__init__.py +0 -0
  99. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/auth.py +0 -0
  100. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/email_layout.html +0 -0
  101. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/emails.py +0 -0
  102. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/file_handling.py +0 -0
  103. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/gcloud_client.py +0 -0
  104. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/jose.py +0 -0
  105. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/rest_utils.py +0 -0
  106. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/shared/utils.py +0 -0
  107. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  108. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  109. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  110. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  111. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/pyproject.toml +0 -0
  112. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/setup.cfg +0 -0
  113. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/setup.py +0 -0
  114. {nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.2.24/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.26}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.24
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+ Version: 1.2.26
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -25,12 +25,13 @@ Requires-Dist: numpy>=2.3.4
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  Requires-Dist: packaging>=25.0
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  Requires-Dist: pandas>=2.3.3
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  Requires-Dist: pyarrow>=22.0.0
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+ Requires-Dist: pydantic~=2.11.7
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  Requires-Dist: python-dotenv>=1.2.1
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  Requires-Dist: requests>=2.32.5
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  Requires-Dist: sqlalchemy>=2.0.44
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  Requires-Dist: sqlalchemy-mixins~=2.0.5
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  Requires-Dist: werkzeug>=3.1.3
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- Requires-Dist: nci-cidc-schemas==0.28.9
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+ Requires-Dist: nci-cidc-schemas==0.28.10
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/cidc_api/models/files/facets.py RENAMED
@@ -440,9 +440,9 @@ assay_facets: Facets = {
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  ),
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  },
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  "Olink HT": {
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- "Batch-Level Combined File": FacetConfig(["/olink_ht/batch_level_combined_file.xlsx"]),
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- "Study-Level Combined File": FacetConfig(["/olink_ht/study_level_combined_file.xlsx"]),
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- "Npx Run File": FacetConfig(["/olink_ht/npx_run_file.xlsx"]),
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+ "Batch-Level Combined File": FacetConfig(["/olink_ht/batch_level_combined_file.parquet"]),
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+ "Study-Level Combined File": FacetConfig(["/olink_ht/study_level_combined_file.parquet"]),
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+ "Npx Run File": FacetConfig(["/olink_ht/npx_run_file.parquet"]),
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  },
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  "IHC": {
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  "Images": FacetConfig(["/ihc/ihc_image."]),
{nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.24
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+ Version: 1.2.26
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
6
6
  License: MIT license
@@ -25,12 +25,13 @@ Requires-Dist: numpy>=2.3.4
25
25
  Requires-Dist: packaging>=25.0
26
26
  Requires-Dist: pandas>=2.3.3
27
27
  Requires-Dist: pyarrow>=22.0.0
28
+ Requires-Dist: pydantic~=2.11.7
28
29
  Requires-Dist: python-dotenv>=1.2.1
29
30
  Requires-Dist: requests>=2.32.5
30
31
  Requires-Dist: sqlalchemy>=2.0.44
31
32
  Requires-Dist: sqlalchemy-mixins~=2.0.5
32
33
  Requires-Dist: werkzeug>=3.1.3
33
- Requires-Dist: nci-cidc-schemas==0.28.9
34
+ Requires-Dist: nci-cidc-schemas==0.28.10
34
35
  Dynamic: description
35
36
  Dynamic: description-content-type
36
37
  Dynamic: home-page
{nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -16,9 +16,10 @@ numpy>=2.3.4
16
16
  packaging>=25.0
17
17
  pandas>=2.3.3
18
18
  pyarrow>=22.0.0
19
+ pydantic~=2.11.7
19
20
  python-dotenv>=1.2.1
20
21
  requests>=2.32.5
21
22
  sqlalchemy>=2.0.44
22
23
  sqlalchemy-mixins~=2.0.5
23
24
  werkzeug>=3.1.3
24
- nci-cidc-schemas==0.28.9
25
+ nci-cidc-schemas==0.28.10
{nci_cidc_api_modules-1.2.24 → nci_cidc_api_modules-1.2.26}/requirements.modules.txt RENAMED
@@ -16,6 +16,7 @@ numpy>=2.3.4
16
16
  packaging>=25.0
17
17
  pandas>=2.3.3
18
18
  pyarrow>=22.0.0
19
+ pydantic~=2.11.7
19
20
  python-dotenv>=1.2.1
20
21
  requests>=2.32.5
21
22
  sqlalchemy>=2.0.44
@@ -23,4 +24,4 @@ sqlalchemy-mixins~=2.0.5
23
24
  werkzeug>=3.1.3
24
25
 
25
26
  # cidc deps
26
- nci-cidc-schemas==0.28.9
27
+ nci-cidc-schemas==0.28.10