nci-cidc-api-modules 1.2.19__tar.gz → 1.2.20__tar.gz

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Files changed (38) hide show
  1. {nci_cidc_api_modules-1.2.19/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.20}/PKG-INFO +2 -2
  2. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/files/facets.py +5 -0
  3. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/types.py +1 -0
  4. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/utils.py +4 -1
  5. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20/nci_cidc_api_modules.egg-info}/PKG-INFO +2 -2
  6. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/requires.txt +1 -1
  7. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/requirements.modules.txt +1 -1
  8. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/LICENSE +0 -0
  9. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/MANIFEST.in +0 -0
  10. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/README.md +0 -0
  11. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/config/__init__.py +0 -0
  12. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/config/db.py +0 -0
  13. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/config/logging.py +0 -0
  14. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/config/secrets.py +0 -0
  15. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/config/settings.py +0 -0
  16. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/__init__.py +0 -0
  17. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/data.py +0 -0
  18. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/files/__init__.py +0 -0
  19. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/files/details.py +0 -0
  20. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/migrations.py +0 -0
  21. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/models.py +0 -0
  22. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/schemas.py +0 -0
  23. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/__init__.py +0 -0
  24. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/auth.py +0 -0
  25. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/email_layout.html +0 -0
  26. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/emails.py +0 -0
  27. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/file_handling.py +0 -0
  28. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/gcloud_client.py +0 -0
  29. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/jose.py +0 -0
  30. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/rest_utils.py +0 -0
  31. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  32. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  33. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  34. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  35. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/pyproject.toml +0 -0
  36. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/setup.cfg +0 -0
  37. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/setup.py +0 -0
  38. {nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.2.19/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.20}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.19
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+ Version: 1.2.20
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -30,7 +30,7 @@ Requires-Dist: requests>=2.32.5
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  Requires-Dist: sqlalchemy>=2.0.44
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  Requires-Dist: sqlalchemy-mixins~=2.0.5
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  Requires-Dist: werkzeug>=3.1.3
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- Requires-Dist: nci-cidc-schemas==0.28.8
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+ Requires-Dist: nci-cidc-schemas==0.28.9
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/files/facets.py RENAMED
@@ -439,6 +439,11 @@ assay_facets: Facets = {
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  "Analysis files for all samples run on the Olink platform in the trial.",
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  ),
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  },
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+ "Olink HT": {
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+ "Batch-Level Combined File": FacetConfig(["/olink_ht/batch_level_combined_file.xlsx"]),
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+ "Study-Level Combined File": FacetConfig(["/olink_ht/study_level_combined_file.xlsx"]),
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+ "Npx Run File": FacetConfig(["/olink_ht/npx_run_file.xlsx"]),
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+ },
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  "IHC": {
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  "Images": FacetConfig(["/ihc/ihc_image."]),
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  "Combined Markers": FacetConfig(["csv|ihc marker combined"]),
{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/models/types.py RENAMED
@@ -84,6 +84,7 @@ AssayType = Literal[
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  "scRNAseq",
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  "snRNA-Seq",
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  "Visium",
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+ "Olink HT",
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  ]
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{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/cidc_api/shared/utils.py RENAMED
@@ -5,4 +5,7 @@ def strip_whitespaces(df):
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  else:
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  return x
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- return df.map(stripper)
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+ df.rename(columns=stripper, inplace=True)
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+ df = df.map(stripper)
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+
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+ return df
{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.19
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+ Version: 1.2.20
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -30,7 +30,7 @@ Requires-Dist: requests>=2.32.5
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  Requires-Dist: sqlalchemy>=2.0.44
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  Requires-Dist: sqlalchemy-mixins~=2.0.5
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  Requires-Dist: werkzeug>=3.1.3
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- Requires-Dist: nci-cidc-schemas==0.28.8
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+ Requires-Dist: nci-cidc-schemas==0.28.9
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -21,4 +21,4 @@ requests>=2.32.5
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  sqlalchemy>=2.0.44
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  sqlalchemy-mixins~=2.0.5
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  werkzeug>=3.1.3
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- nci-cidc-schemas==0.28.8
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+ nci-cidc-schemas==0.28.9
{nci_cidc_api_modules-1.2.19 → nci_cidc_api_modules-1.2.20}/requirements.modules.txt RENAMED
@@ -23,4 +23,4 @@ sqlalchemy-mixins~=2.0.5
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  werkzeug>=3.1.3
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  # cidc deps
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- nci-cidc-schemas==0.28.8
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+ nci-cidc-schemas==0.28.9