nci-cidc-api-modules 1.2.13__tar.gz → 1.2.15__tar.gz

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Files changed (38) hide show
  1. nci_cidc_api_modules-1.2.15/MANIFEST.in +2 -0
  2. {nci_cidc_api_modules-1.2.13/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.2.15}/PKG-INFO +14 -14
  3. nci_cidc_api_modules-1.2.15/cidc_api/shared/email_layout.html +258 -0
  4. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15/nci_cidc_api_modules.egg-info}/PKG-INFO +14 -14
  5. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/nci_cidc_api_modules.egg-info/SOURCES.txt +1 -0
  6. nci_cidc_api_modules-1.2.15/nci_cidc_api_modules.egg-info/requires.txt +23 -0
  7. nci_cidc_api_modules-1.2.15/requirements.modules.txt +25 -0
  8. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/setup.py +1 -0
  9. nci_cidc_api_modules-1.2.13/MANIFEST.in +0 -1
  10. nci_cidc_api_modules-1.2.13/nci_cidc_api_modules.egg-info/requires.txt +0 -23
  11. nci_cidc_api_modules-1.2.13/requirements.modules.txt +0 -25
  12. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/LICENSE +0 -0
  13. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/README.md +0 -0
  14. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/config/__init__.py +0 -0
  15. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/config/db.py +0 -0
  16. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/config/logging.py +0 -0
  17. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/config/secrets.py +0 -0
  18. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/config/settings.py +0 -0
  19. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/__init__.py +0 -0
  20. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/files/__init__.py +0 -0
  21. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/files/details.py +0 -0
  22. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/files/facets.py +0 -0
  23. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/migrations.py +0 -0
  24. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/models.py +0 -0
  25. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/models/schemas.py +0 -0
  26. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/__init__.py +0 -0
  27. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/auth.py +0 -0
  28. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/emails.py +0 -0
  29. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/file_handling.py +0 -0
  30. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/gcloud_client.py +0 -0
  31. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/jose.py +0 -0
  32. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/cidc_api/shared/rest_utils.py +0 -0
  33. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  34. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  35. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  36. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/pyproject.toml +0 -0
  37. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/setup.cfg +0 -0
  38. {nci_cidc_api_modules-1.2.13 → nci_cidc_api_modules-1.2.15}/tests/test_api.py +0 -0
@@ -0,0 +1,2 @@
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+ include requirements.modules.txt
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+ include cidc_api/shared/email_layout.html
@@ -1,35 +1,35 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.2.13
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+ Version: 1.2.15
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
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  Requires-Python: >=3.13
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: certifi>=2025.8.3
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- Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
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+ Requires-Dist: certifi>=2025.10.5
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+ Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.5
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  Requires-Dist: flask>=3.1.2
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  Requires-Dist: flask-migrate>=4.1.0
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  Requires-Dist: flask-sqlalchemy>=3.1.1
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- Requires-Dist: google-auth>=2.41.0
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- Requires-Dist: google-api-python-client>=2.183.0
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+ Requires-Dist: google-auth>=2.42.0
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+ Requires-Dist: google-api-python-client>=2.185.0
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  Requires-Dist: google-cloud-bigquery>=3.38.0
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- Requires-Dist: google-cloud-pubsub>=2.31.1
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- Requires-Dist: google-cloud-secret-manager>=2.24.0
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- Requires-Dist: google-cloud-storage>=3.4.0
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+ Requires-Dist: google-cloud-pubsub>=2.32.0
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+ Requires-Dist: google-cloud-secret-manager>=2.25.0
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+ Requires-Dist: google-cloud-storage>=3.4.1
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  Requires-Dist: jinja2>=3.1.6
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- Requires-Dist: marshmallow>=4.0.0
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+ Requires-Dist: marshmallow>=4.0.1
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  Requires-Dist: marshmallow-sqlalchemy>=1.4.2
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- Requires-Dist: numpy>=2.3.2
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+ Requires-Dist: numpy>=2.3.4
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  Requires-Dist: packaging>=25.0
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  Requires-Dist: pandas>=2.3.3
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- Requires-Dist: pyarrow>=21.0.0
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- Requires-Dist: python-dotenv>=1.1.1
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+ Requires-Dist: pyarrow>=22.0.0
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+ Requires-Dist: python-dotenv>=1.2.1
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  Requires-Dist: requests>=2.32.5
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- Requires-Dist: sqlalchemy>=2.0.43
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+ Requires-Dist: sqlalchemy>=2.0.44
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  Requires-Dist: werkzeug>=3.1.3
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- Requires-Dist: nci-cidc-schemas==0.28.7
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+ Requires-Dist: nci-cidc-schemas==0.28.8
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
@@ -0,0 +1,258 @@
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+ <!DOCTYPE html>
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+ <html>
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+
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+ <head>
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+ <title>Manifest Status Notification</title>
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+ <meta charset="utf-8">
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+ <meta name="viewport" content="width=device-width, initial-scale=1">
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+ <meta http-equiv="Content-Type" content="text/html charset=UTF-8" />
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+ <meta http-equiv="X-UA-Compatible" content="IE=edge" />
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+ <style type="text/css">
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+ /* CLIENT-SPECIFIC STYLES */
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+ body,
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+ table,
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+ td,
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+ a {
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+ -webkit-text-size-adjust: 100%;
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+ -ms-text-size-adjust: 100%;
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+ }
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+
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+ /* Prevent WebKit and Windows mobile changing default text sizes */
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+ table,
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+ td {
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+ mso-table-lspace: 0pt;
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+ mso-table-rspace: 0pt;
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+ }
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+
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+ /* Remove spacing between tables in Outlook 2007 and up */
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+ img {
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+ -ms-interpolation-mode: bicubic;
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+ }
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+
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+ /* Allow smoother rendering of resized image in Internet Explorer */
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+
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+ /* RESET STYLES */
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+ img {
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+ border: 0;
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+ height: auto;
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+ line-height: 100%;
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+ outline: none;
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+ text-decoration: none;
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+ }
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+
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+ table {
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+ border-collapse: collapse !important;
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+ }
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+
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+ body {
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+ height: 100% !important;
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+ margin: 0 !important;
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+ padding: 0 !important;
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+ width: 100% !important;
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+ }
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+
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+ /* iOS BLUE LINKS */
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+ a[x-apple-data-detectors] {
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+ color: inherit !important;
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+ text-decoration: none !important;
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+ font-size: inherit !important;
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+ font-family: inherit !important;
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+ font-weight: inherit !important;
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+ line-height: inherit !important;
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+ }
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+
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+ /* MOBILE STYLES */
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+ @media screen and (max-width: 525px) {
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+
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+ /* ALLOWS FOR FLUID TABLES */
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+ .wrapper {
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+ width: 100% !important;
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+ max-width: 100% !important;
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+ }
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+
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+ /* ADJUSTS LAYOUT OF LOGO IMAGE */
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+ .logo img {
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+ margin: 0 auto !important;
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+ }
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+
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+ /* USE THESE CLASSES TO HIDE CONTENT ON MOBILE */
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+ .mobile-hide {
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+ display: none !important;
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+ }
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+
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+ .img-max {
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+ max-width: 100% !important;
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+ width: 100% !important;
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+ height: auto !important;
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+ }
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+
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+ /* FULL-WIDTH TABLES */
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+ .responsive-table {
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+ width: 100% !important;
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+ }
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+
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+ /* UTILITY CLASSES FOR ADJUSTING PADDING ON MOBILE */
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+ .padding {
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+ padding: 10px 5% 15px 5% !important;
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+ }
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+
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+ .padding-meta {
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+ padding: 30px 5% 0px 5% !important;
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+ text-align: center;
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+ }
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+
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+ .padding-copy {
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+ padding: 10px 5% 10px 5% !important;
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+ text-align: center;
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+ }
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+
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+ .no-padding {
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+ padding: 0 !important;
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+ }
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+
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+ .section-padding {
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+ padding: 50px 15px 50px 15px !important;
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+ }
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+
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+ /* ADJUST BUTTONS ON MOBILE */
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+ .mobile-button-container {
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+ margin: 0 auto;
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+ width: 100% !important;
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+ }
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+
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+ .mobile-button {
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+ padding: 15px !important;
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+ border: 0 !important;
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+ font-size: 16px !important;
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+ display: block !important;
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+ }
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+
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+ }
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+
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+ /* ANDROID CENTER FIX */
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+ div[style*="margin: 16px 0;"] {
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+ margin: 0 !important;
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+ }
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+
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+ a {
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+ color: white;
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+ text-decoration: underline;
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+ }
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+
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+ .blue-link {
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+ color: #1B6B82;
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+ }
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+ </style>
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+ </head>
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+
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+ <body style="margin: 0 !important; padding: 0 !important; background-color:#F5F5F5;">
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+
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+ <!-- ONE COLUMN SECTION -->
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+ <table bgcolor="#F5F5F5" border="0" cellpadding="0" cellspacing="0" width="100%">
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+
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+ <tr>
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+ <td align="center" style="padding: 60px 16px 16px; margin-top: -32px;" class="section-padding">
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+ <!--[if (gte mso 9)|(IE)]>
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+ <table align="center" border="0" cellspacing="0" cellpadding="0" width="500">
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+ <tr>
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+ <td align="center" valign="top" width="500">
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+ <![endif]-->
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+ <table bgcolor="#ffffff" border="0" cellpadding="0" cellspacing="0" width="100%" style="max-width: 520px;"
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+ class="responsive-table">
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+ <tr>
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+ <td>
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+ <table width="100%" border="0" cellspacing="0" cellpadding="0">
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+ <tr>
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+ <td>
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+ <table width="100%" border="0" cellspacing="0" cellpadding="0">
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+ <tr>
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+ <td align="center"
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+ style="padding: 32px 0 0 0; font-size: 18px; line-height: 25px; font-family: Helvetica, Arial, sans-serif; color: #3F414F;"
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+ class="padding-copy">
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+ Cancer Immunologic Data Center (CIDC)</td>
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+ </tr>
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+ <tr>
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+ <td align="center"
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+ style="padding: 50px 32px 0 32px; line-height: 42px; font-family: Helvetica, Arial, sans-serif; color: #666666;">
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+ <h1 style="margin:0; mso-line-height-rule:exactly; padding: 0 32px 0 32px">
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+ $HEADING
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+ </h1>
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+ </td>
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+ </tr>
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+ <tr>
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+ <td align="center"
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+ style="padding: 40px 40px 40px 40px; font-size: 16px; line-height: 25px; font-family: Helvetica, Arial, sans-serif; color: #666666;"
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+ class="padding-copy">
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+ $CONTENT
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+ </td>
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+ </tr>
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+ </table>
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+ </td>
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+ </tr>
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+ </table>
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+ </td>
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+ </tr>
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+ </table>
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+ <!--[if (gte mso 9)|(IE)]>
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+ </td>
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+ </tr>
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+ </table>
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+ <![endif]-->
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+ </td>
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+ </tr>
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+ <tr>
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+ <td align="center" style="padding: 20px 0px;">
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+ <!--[if (gte mso 9)|(IE)]>
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+ <table align="center" border="0" cellspacing="0" cellpadding="0" width="500">
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+ <tr>
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+ <td align="center" valign="top" width="500">
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+ <![endif]-->
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+ <table bgcolor="#1B6B82" width="100%" border="0" cellspacing="0" cellpadding="0" align="center"
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+ style="max-width: 520px; " class="responsive-table">
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+ <tr>
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+ <td align="center"
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+ style="padding: 20px 0 0 0; font-size: 18px; line-height: 18px; font-family: Helvetica, Arial, sans-serif; color:#fff; text-align: center">
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+ Need help?
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+ </td>
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+ </tr>
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+ <tr>
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+ <td align="center"
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+ style="padding: 10px 0 20px 0; font-size: 14px; line-height: 18px; font-family: Helvetica, Arial, sans-serif; color:#fff; text-align: center">
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+ Send us an email at <a href="mailto:ncicidcadmin@mail.nih.gov">ncicidcadmin@mail.nih.gov</a>
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+ </td>
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+ </tr>
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+ </table>
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+ <!--[if (gte mso 9)|(IE)]>
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+ </td>
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+ </tr>
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+ </table>
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+ <![endif]-->
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+ </td>
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+ </tr>
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+ <tr>
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+ <td align="center" style="padding: 20px 0px;">
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+ <!--[if (gte mso 9)|(IE)]>
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+ <table align="center" border="0" cellspacing="0" cellpadding="0" width="500">
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+ <tr>
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+ <td align="center" valign="top" width="500">
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+ <![endif]-->
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+ <table width="100%" border="0" cellspacing="0" cellpadding="0" align="center" style="max-width: 520px; "
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+ class="responsive-table">
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+ <tr>
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+ <td align="center"
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+ style="padding: 10px 0 20px 0; font-size: 14px; line-height: 18px; font-family: Helvetica, Arial, sans-serif; color:#666666;">
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+ National Cancer Institute at the National institutes of Health
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+ </td>
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+ </tr>
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+ </table>
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+ <!--[if (gte mso 9)|(IE)]>
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+ </td>
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+ </tr>
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+ </table>
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+ <![endif]-->
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+ </td>
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+ </tr>
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+ </table>
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+ </body>
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+
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+ </html>
@@ -1,35 +1,35 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: nci_cidc_api_modules
3
- Version: 1.2.13
3
+ Version: 1.2.15
4
4
  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
6
6
  License: MIT license
7
7
  Requires-Python: >=3.13
8
8
  Description-Content-Type: text/markdown
9
9
  License-File: LICENSE
10
- Requires-Dist: certifi>=2025.8.3
11
- Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.4
10
+ Requires-Dist: certifi>=2025.10.5
11
+ Requires-Dist: cloud-sql-python-connector[pg8000]>=1.18.5
12
12
  Requires-Dist: flask>=3.1.2
13
13
  Requires-Dist: flask-migrate>=4.1.0
14
14
  Requires-Dist: flask-sqlalchemy>=3.1.1
15
- Requires-Dist: google-auth>=2.41.0
16
- Requires-Dist: google-api-python-client>=2.183.0
15
+ Requires-Dist: google-auth>=2.42.0
16
+ Requires-Dist: google-api-python-client>=2.185.0
17
17
  Requires-Dist: google-cloud-bigquery>=3.38.0
18
- Requires-Dist: google-cloud-pubsub>=2.31.1
19
- Requires-Dist: google-cloud-secret-manager>=2.24.0
20
- Requires-Dist: google-cloud-storage>=3.4.0
18
+ Requires-Dist: google-cloud-pubsub>=2.32.0
19
+ Requires-Dist: google-cloud-secret-manager>=2.25.0
20
+ Requires-Dist: google-cloud-storage>=3.4.1
21
21
  Requires-Dist: jinja2>=3.1.6
22
- Requires-Dist: marshmallow>=4.0.0
22
+ Requires-Dist: marshmallow>=4.0.1
23
23
  Requires-Dist: marshmallow-sqlalchemy>=1.4.2
24
- Requires-Dist: numpy>=2.3.2
24
+ Requires-Dist: numpy>=2.3.4
25
25
  Requires-Dist: packaging>=25.0
26
26
  Requires-Dist: pandas>=2.3.3
27
- Requires-Dist: pyarrow>=21.0.0
28
- Requires-Dist: python-dotenv>=1.1.1
27
+ Requires-Dist: pyarrow>=22.0.0
28
+ Requires-Dist: python-dotenv>=1.2.1
29
29
  Requires-Dist: requests>=2.32.5
30
- Requires-Dist: sqlalchemy>=2.0.43
30
+ Requires-Dist: sqlalchemy>=2.0.44
31
31
  Requires-Dist: werkzeug>=3.1.3
32
- Requires-Dist: nci-cidc-schemas==0.28.7
32
+ Requires-Dist: nci-cidc-schemas==0.28.8
33
33
  Dynamic: description
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  Dynamic: description-content-type
35
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  Dynamic: home-page
@@ -18,6 +18,7 @@ cidc_api/models/files/details.py
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  cidc_api/models/files/facets.py
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  cidc_api/shared/__init__.py
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  cidc_api/shared/auth.py
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+ cidc_api/shared/email_layout.html
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  cidc_api/shared/emails.py
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  cidc_api/shared/file_handling.py
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  cidc_api/shared/gcloud_client.py
@@ -0,0 +1,23 @@
1
+ certifi>=2025.10.5
2
+ cloud-sql-python-connector[pg8000]>=1.18.5
3
+ flask>=3.1.2
4
+ flask-migrate>=4.1.0
5
+ flask-sqlalchemy>=3.1.1
6
+ google-auth>=2.42.0
7
+ google-api-python-client>=2.185.0
8
+ google-cloud-bigquery>=3.38.0
9
+ google-cloud-pubsub>=2.32.0
10
+ google-cloud-secret-manager>=2.25.0
11
+ google-cloud-storage>=3.4.1
12
+ jinja2>=3.1.6
13
+ marshmallow>=4.0.1
14
+ marshmallow-sqlalchemy>=1.4.2
15
+ numpy>=2.3.4
16
+ packaging>=25.0
17
+ pandas>=2.3.3
18
+ pyarrow>=22.0.0
19
+ python-dotenv>=1.2.1
20
+ requests>=2.32.5
21
+ sqlalchemy>=2.0.44
22
+ werkzeug>=3.1.3
23
+ nci-cidc-schemas==0.28.8
@@ -0,0 +1,25 @@
1
+ certifi>=2025.10.5
2
+ cloud-sql-python-connector[pg8000]>=1.18.5
3
+ flask>=3.1.2
4
+ flask-migrate>=4.1.0
5
+ flask-sqlalchemy>=3.1.1
6
+ google-auth>=2.42.0
7
+ google-api-python-client>=2.185.0
8
+ google-cloud-bigquery>=3.38.0
9
+ google-cloud-pubsub>=2.32.0
10
+ google-cloud-secret-manager>=2.25.0
11
+ google-cloud-storage>=3.4.1
12
+ jinja2>=3.1.6
13
+ marshmallow>=4.0.1
14
+ marshmallow-sqlalchemy>=1.4.2
15
+ numpy>=2.3.4
16
+ packaging>=25.0
17
+ pandas>=2.3.3
18
+ pyarrow>=22.0.0
19
+ python-dotenv>=1.2.1
20
+ requests>=2.32.5
21
+ sqlalchemy>=2.0.44
22
+ werkzeug>=3.1.3
23
+
24
+ # cidc deps
25
+ nci-cidc-schemas==0.28.8
@@ -16,6 +16,7 @@ setup(
16
16
  python_requires=">=3.13",
17
17
  install_requires=requirements,
18
18
  license="MIT license",
19
+ include_package_data=True,
19
20
  packages=[
20
21
  "cidc_api.config",
21
22
  "cidc_api.models",
@@ -1 +0,0 @@
1
- include requirements.modules.txt
@@ -1,23 +0,0 @@
1
- certifi>=2025.8.3
2
- cloud-sql-python-connector[pg8000]>=1.18.4
3
- flask>=3.1.2
4
- flask-migrate>=4.1.0
5
- flask-sqlalchemy>=3.1.1
6
- google-auth>=2.41.0
7
- google-api-python-client>=2.183.0
8
- google-cloud-bigquery>=3.38.0
9
- google-cloud-pubsub>=2.31.1
10
- google-cloud-secret-manager>=2.24.0
11
- google-cloud-storage>=3.4.0
12
- jinja2>=3.1.6
13
- marshmallow>=4.0.0
14
- marshmallow-sqlalchemy>=1.4.2
15
- numpy>=2.3.2
16
- packaging>=25.0
17
- pandas>=2.3.3
18
- pyarrow>=21.0.0
19
- python-dotenv>=1.1.1
20
- requests>=2.32.5
21
- sqlalchemy>=2.0.43
22
- werkzeug>=3.1.3
23
- nci-cidc-schemas==0.28.7
@@ -1,25 +0,0 @@
1
- certifi>=2025.8.3
2
- cloud-sql-python-connector[pg8000]>=1.18.4
3
- flask>=3.1.2
4
- flask-migrate>=4.1.0
5
- flask-sqlalchemy>=3.1.1
6
- google-auth>=2.41.0
7
- google-api-python-client>=2.183.0
8
- google-cloud-bigquery>=3.38.0
9
- google-cloud-pubsub>=2.31.1
10
- google-cloud-secret-manager>=2.24.0
11
- google-cloud-storage>=3.4.0
12
- jinja2>=3.1.6
13
- marshmallow>=4.0.0
14
- marshmallow-sqlalchemy>=1.4.2
15
- numpy>=2.3.2
16
- packaging>=25.0
17
- pandas>=2.3.3
18
- pyarrow>=21.0.0
19
- python-dotenv>=1.1.1
20
- requests>=2.32.5
21
- sqlalchemy>=2.0.43
22
- werkzeug>=3.1.3
23
-
24
- # cidc deps
25
- nci-cidc-schemas==0.28.7