nci-cidc-api-modules 1.1.5__tar.gz → 1.1.7__tar.gz

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Files changed (36) hide show
  1. {nci_cidc_api_modules-1.1.5/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.1.7}/PKG-INFO +2 -2
  2. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/csms_api.py +0 -6
  3. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/emails.py +0 -13
  4. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7/nci_cidc_api_modules.egg-info}/PKG-INFO +2 -2
  5. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/requires.txt +1 -1
  6. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/requirements.modules.txt +1 -1
  7. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/LICENSE +0 -0
  8. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/MANIFEST.in +0 -0
  9. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/README.md +0 -0
  10. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/config/__init__.py +0 -0
  11. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/config/db.py +0 -0
  12. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/config/logging.py +0 -0
  13. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/config/secrets.py +0 -0
  14. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/config/settings.py +0 -0
  15. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/csms/__init__.py +0 -0
  16. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/csms/auth.py +0 -0
  17. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/__init__.py +0 -0
  18. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/files/__init__.py +0 -0
  19. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/files/details.py +0 -0
  20. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/files/facets.py +0 -0
  21. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/migrations.py +0 -0
  22. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/models.py +0 -0
  23. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/schemas.py +0 -0
  24. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/__init__.py +0 -0
  25. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/auth.py +0 -0
  26. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/gcloud_client.py +0 -0
  27. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/jose.py +0 -0
  28. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/rest_utils.py +0 -0
  29. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  30. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  31. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  32. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  33. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/pyproject.toml +0 -0
  34. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/setup.cfg +0 -0
  35. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/setup.py +0 -0
  36. {nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.1.5/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.1.7}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: nci_cidc_api_modules
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- Version: 1.1.5
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+ Version: 1.1.7
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
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  Requires-Dist: requests==2.32.3
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  Requires-Dist: jinja2==3.1.5
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  Requires-Dist: certifi==2024.7.4
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- Requires-Dist: nci-cidc-schemas==0.27.04
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+ Requires-Dist: nci-cidc-schemas==0.27.05
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/models/csms_api.py RENAMED
@@ -292,12 +292,6 @@ def _process_csms_sample(csms_sample: dict):
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  csms_sample["sample_derivative_concentration"]
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  )
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- # "Not Reported" as default when required
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- if (
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- csms_sample["type_of_sample"] == "Blood"
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- and "type_of_primary_container" not in csms_sample
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- ):
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- csms_sample["type_of_primary_container"] = "Not Reported"
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  if "parent_sample_id" not in csms_sample:
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  csms_sample["parent_sample_id"] = "Not Reported"
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{nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/cidc_api/shared/emails.py RENAMED
@@ -115,19 +115,6 @@ def new_upload_alert(upload, full_metadata) -> dict:
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  "html_content": html_content,
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  }
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- if pipeline_configs:
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- email["attachments"] = [
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- {
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- # converting to base64 email attachment format (en/decode due to b64 expecting bytes)
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- "content": base64.b64encode(
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- conf.encode() if isinstance(conf, str) else conf
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- ).decode(),
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- "type": "application/yaml",
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- "filename": conf_name,
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- }
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- for conf_name, conf in pipeline_configs.items()
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- ]
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-
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  return email
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{nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: nci_cidc_api_modules
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- Version: 1.1.5
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+ Version: 1.1.7
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
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  Requires-Dist: requests==2.32.3
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  Requires-Dist: jinja2==3.1.5
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  Requires-Dist: certifi==2024.7.4
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- Requires-Dist: nci-cidc-schemas==0.27.04
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+ Requires-Dist: nci-cidc-schemas==0.27.05
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
{nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -19,4 +19,4 @@ python-dotenv==0.10.3
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  requests==2.32.3
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  jinja2==3.1.5
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  certifi==2024.7.4
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- nci-cidc-schemas==0.27.04
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+ nci-cidc-schemas==0.27.05
{nci_cidc_api_modules-1.1.5 → nci_cidc_api_modules-1.1.7}/requirements.modules.txt RENAMED
@@ -19,4 +19,4 @@ python-dotenv==0.10.3
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  requests==2.32.3
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  jinja2==3.1.5
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  certifi==2024.7.4
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- nci-cidc-schemas==0.27.04
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+ nci-cidc-schemas==0.27.05