nci-cidc-api-modules 1.1.19__tar.gz → 1.1.20__tar.gz

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Files changed (36) hide show
  1. {nci_cidc_api_modules-1.1.19/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.1.20}/PKG-INFO +3 -3
  2. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/README.md +1 -1
  3. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/files/details.py +36 -0
  4. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/files/facets.py +9 -0
  5. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20/nci_cidc_api_modules.egg-info}/PKG-INFO +3 -3
  6. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/requires.txt +1 -1
  7. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/requirements.modules.txt +1 -1
  8. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/LICENSE +0 -0
  9. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/MANIFEST.in +0 -0
  10. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/config/__init__.py +0 -0
  11. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/config/db.py +0 -0
  12. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/config/logging.py +0 -0
  13. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/config/secrets.py +0 -0
  14. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/config/settings.py +0 -0
  15. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/csms/__init__.py +0 -0
  16. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/csms/auth.py +0 -0
  17. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/__init__.py +0 -0
  18. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/csms_api.py +0 -0
  19. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/files/__init__.py +0 -0
  20. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/migrations.py +0 -0
  21. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/models.py +0 -0
  22. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/schemas.py +0 -0
  23. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/__init__.py +0 -0
  24. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/auth.py +0 -0
  25. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/emails.py +0 -0
  26. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/gcloud_client.py +0 -0
  27. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/jose.py +0 -0
  28. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/shared/rest_utils.py +0 -0
  29. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  30. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  31. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  32. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  33. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/pyproject.toml +0 -0
  34. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/setup.cfg +0 -0
  35. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/setup.py +0 -0
  36. {nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.1.19/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.1.20}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.1.19
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+ Version: 1.1.20
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
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  Requires-Dist: requests==2.32.3
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  Requires-Dist: jinja2==3.1.6
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  Requires-Dist: certifi==2024.7.4
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- Requires-Dist: nci-cidc-schemas==0.27.12
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+ Requires-Dist: nci-cidc-schemas==0.27.13
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
@@ -71,7 +71,7 @@ source venv/bin/activate
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  # alias activate='source venv/bin/activate'
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  ```
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- Install both the production and development dependencies.
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+ Install both the production and development dependencies.
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  ```bash
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  pip install -r requirements.dev.txt
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/README.md RENAMED
@@ -31,7 +31,7 @@ source venv/bin/activate
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  # alias activate='source venv/bin/activate'
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  ```
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- Install both the production and development dependencies.
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+ Install both the production and development dependencies.
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  ```bash
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  pip install -r requirements.dev.txt
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/files/details.py RENAMED
@@ -957,4 +957,40 @@ details_dict = {
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  "H and E file from MIBI analysis",
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  "",
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  ),
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+ # mihc
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+ "/mihc/sample_report.csv": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/multitiffs.tar.gz": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/tilemap.ome.tiff": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/tilestats.csv": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/geo_jsons.zip": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/stains.zip": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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+ "/mihc/h5ad.h5ad": FileDetails(
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+ "source",
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+ "",
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+ "",
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+ ),
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  }
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/cidc_api/models/files/facets.py RENAMED
@@ -346,6 +346,15 @@ assay_facets: Facets = {
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  "H and E file from MIBI analysis",
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  ),
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  },
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+ "mIHC": {
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+ "Samples Report": FacetConfig(["/mihc/sample_report.csv"], "Samples report for mIHC run"),
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+ "Multitiffs": FacetConfig(["/mihc/multitiffs.tar.gz"], "Multi Tiffs file from mIHC run"),
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+ "Tile Map": FacetConfig(["/mihc/tilemap.ome.tiff"], "Tile map file from mIHC run"),
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+ "Tile Stats": FacetConfig(["/mihc/tilestats.csv"], "Tile stats file from mIHC run"),
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+ "GeoJsons Zip": FacetConfig(["/mihc/geo_jsons.zip"], "Zip of all geo jsons from mIHC run"),
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+ "Stains Zip": FacetConfig(["/mihc/stains.zip"], "Zip of all svs stain files from mIHC run"),
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+ "H5ad File": FacetConfig(["/mihc/h5ad.h5ad"], "H5ad file from mIHC run"),
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+ },
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  "mIF": {
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  "Source Images": FacetConfig(
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  [
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nci_cidc_api_modules
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- Version: 1.1.19
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+ Version: 1.1.20
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  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
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  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
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  License: MIT license
@@ -28,7 +28,7 @@ Requires-Dist: python-dotenv==0.10.3
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  Requires-Dist: requests==2.32.3
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  Requires-Dist: jinja2==3.1.6
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  Requires-Dist: certifi==2024.7.4
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- Requires-Dist: nci-cidc-schemas==0.27.12
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+ Requires-Dist: nci-cidc-schemas==0.27.13
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  Dynamic: description
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  Dynamic: description-content-type
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  Dynamic: home-page
@@ -71,7 +71,7 @@ source venv/bin/activate
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  # alias activate='source venv/bin/activate'
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  ```
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- Install both the production and development dependencies.
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+ Install both the production and development dependencies.
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  ```bash
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  pip install -r requirements.dev.txt
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/nci_cidc_api_modules.egg-info/requires.txt RENAMED
@@ -19,4 +19,4 @@ python-dotenv==0.10.3
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  requests==2.32.3
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  jinja2==3.1.6
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  certifi==2024.7.4
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- nci-cidc-schemas==0.27.12
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+ nci-cidc-schemas==0.27.13
{nci_cidc_api_modules-1.1.19 → nci_cidc_api_modules-1.1.20}/requirements.modules.txt RENAMED
@@ -19,4 +19,4 @@ python-dotenv==0.10.3
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  requests==2.32.3
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  jinja2==3.1.6
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  certifi==2024.7.4
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- nci-cidc-schemas==0.27.12
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+ nci-cidc-schemas==0.27.13