nci-cidc-api-modules 1.0.4__tar.gz → 1.0.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. {nci_cidc_api_modules-1.0.4/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.0.6}/PKG-INFO +1 -1
  2. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/__init__.py +1 -0
  3. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/emails.py +8 -4
  4. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6/nci_cidc_api_modules.egg-info}/PKG-INFO +1 -1
  5. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/pyproject.toml +6 -5
  6. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/LICENSE +0 -0
  7. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/MANIFEST.in +0 -0
  8. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/README.md +0 -0
  9. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/db.py +0 -0
  10. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/logging.py +0 -0
  11. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/secrets.py +0 -0
  12. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/settings.py +0 -0
  13. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/csms/__init__.py +0 -0
  14. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/csms/auth.py +0 -0
  15. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/__init__.py +0 -0
  16. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/csms_api.py +0 -0
  17. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/files/__init__.py +0 -0
  18. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/files/details.py +0 -0
  19. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/files/facets.py +0 -0
  20. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/migrations.py +0 -0
  21. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/models.py +0 -0
  22. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/models/schemas.py +0 -0
  23. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/__init__.py +0 -0
  24. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/auth.py +0 -0
  25. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/gcloud_client.py +0 -0
  26. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/rest_utils.py +0 -0
  27. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/nci_cidc_api_modules.egg-info/SOURCES.txt +0 -0
  28. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/nci_cidc_api_modules.egg-info/dependency_links.txt +0 -0
  29. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/nci_cidc_api_modules.egg-info/not-zip-safe +0 -0
  30. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/nci_cidc_api_modules.egg-info/requires.txt +0 -0
  31. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/nci_cidc_api_modules.egg-info/top_level.txt +0 -0
  32. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/requirements.modules.txt +0 -0
  33. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/setup.cfg +0 -0
  34. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/setup.py +0 -0
  35. {nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/tests/test_api.py +0 -0
{nci_cidc_api_modules-1.0.4/nci_cidc_api_modules.egg-info → nci_cidc_api_modules-1.0.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: nci_cidc_api_modules
3
- Version: 1.0.4
3
+ Version: 1.0.6
4
4
  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
6
6
  License: MIT license
{nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/config/__init__.py RENAMED
@@ -1,3 +1,4 @@
1
1
  """Configuration for the CIDC API."""
2
+
2
3
  from .db import get_sqlalchemy_database_uri # for CFns
3
4
  from .secrets import get_secrets_manager # for CFns
{nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/cidc_api/shared/emails.py RENAMED
@@ -1,4 +1,5 @@
1
1
  """Template functions for CIDC email bodies."""
2
+
2
3
  import html
3
4
  import base64
4
5
  from functools import wraps
@@ -86,10 +87,13 @@ def new_user_registration(email: str) -> dict:
86
87
  @sendable
87
88
  def new_upload_alert(upload, full_metadata) -> dict:
88
89
  """Alert the CIDC administrators that an upload succeeded."""
89
- pipeline_configs: Dict[
90
- str, Union[bytes, str]
91
- ] = generate_analysis_configs_from_upload_patch(
92
- full_metadata, upload.metadata_patch, upload.upload_type, GOOGLE_ACL_DATA_BUCKET
90
+ pipeline_configs: Dict[str, Union[bytes, str]] = (
91
+ generate_analysis_configs_from_upload_patch(
92
+ full_metadata,
93
+ upload.metadata_patch,
94
+ upload.upload_type,
95
+ GOOGLE_ACL_DATA_BUCKET,
96
+ )
93
97
  )
94
98
 
95
99
  subject = (
{nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6/nci_cidc_api_modules.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: nci_cidc_api_modules
3
- Version: 1.0.4
3
+ Version: 1.0.6
4
4
  Summary: SQLAlchemy data models and configuration tools used in the NCI CIDC API
5
5
  Home-page: https://github.com/NCI-CIDC/cidc-api-gae
6
6
  License: MIT license
{nci_cidc_api_modules-1.0.4 → nci_cidc_api_modules-1.0.6}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [tool.black]
2
2
  exclude = "migrations"
3
- target-version = ["py36"]
3
+ target-version = ["py39"]
4
4
 
5
5
  [tool.pytest.ini_options]
6
6
  minversion = "6.0"
@@ -21,7 +21,7 @@ flask-cachecontrol = "0.3.0"
21
21
  six = "1.13.0"
22
22
  python-jose = "3.0.1"
23
23
  psycopg2-binary = ">=2,<3"
24
- packaging = "19.2"
24
+ packaging = ">=20.0.0"
25
25
  protobuf = "3.20.3"
26
26
  gunicorn = "^21.2.0"
27
27
  gevent = "23.9.1"
@@ -29,10 +29,11 @@ psycogreen = "1.0.2"
29
29
  webargs = "6.0.0"
30
30
  dash = "2.15.0"
31
31
  markupsafe = "2.1.5"
32
+ pyarrow="14.0.1"
32
33
 
33
34
  [tool.poetry.group.dev.dependencies]
34
35
  pytest = ">=8.0.1,<8.1.0"
35
- black = "22.3.0"
36
+ black = "24.3.0"
36
37
  pre-commit = "2.9.2"
37
38
  ipython = "8.13.0"
38
39
  flask-shell-ipython = "0.5.1"
@@ -50,10 +51,10 @@ flask-sqlalchemy = "2.5.1"
50
51
  sqlalchemy = ">=1.3.0,<1.4.0"
51
52
  marshmallow = "3.19.0"
52
53
  marshmallow-sqlalchemy = "0.22.3"
53
- google-cloud-storage = ">=1.35.0,<1.36.0"
54
+ google-cloud-storage = "1.35.1"
54
55
  google-cloud-secret-manager = "2.16.2"
55
56
  google-cloud-pubsub = "0.43.0"
56
- google-cloud-bigquery = "3.3.5"
57
+ google-cloud-bigquery = "3.18.0"
57
58
  google-api-python-client = "2.64.0"
58
59
  pandas = ">=1,<2"
59
60
  python-dotenv = "0.10.3"