nbdev 3.2.1__tar.gz → 3.3.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. {nbdev-3.2.1/nbdev.egg-info → nbdev-3.3.0}/PKG-INFO +6 -6
  2. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/__init__.py +1 -1
  3. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/_modidx.py +26 -9
  4. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/clean.py +109 -19
  5. nbdev-3.3.0/nbdev/diff.py +198 -0
  6. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/migrate.py +1 -0
  7. nbdev-3.3.0/nbdev/process.py +88 -0
  8. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/processors.py +3 -3
  9. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/release.py +33 -7
  10. nbdev-3.3.0/nbdev/skill.py +181 -0
  11. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/sync.py +1 -2
  12. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/test.py +1 -1
  13. {nbdev-3.2.1 → nbdev-3.3.0/nbdev.egg-info}/PKG-INFO +6 -6
  14. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev.egg-info/SOURCES.txt +1 -0
  15. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev.egg-info/entry_points.txt +5 -0
  16. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev.egg-info/requires.txt +4 -4
  17. {nbdev-3.2.1 → nbdev-3.3.0}/pyproject.toml +8 -3
  18. nbdev-3.2.1/nbdev/diff.py +0 -94
  19. nbdev-3.2.1/nbdev/process.py +0 -138
  20. {nbdev-3.2.1 → nbdev-3.3.0}/CONTRIBUTING.md +0 -0
  21. {nbdev-3.2.1 → nbdev-3.3.0}/LICENSE +0 -0
  22. {nbdev-3.2.1 → nbdev-3.3.0}/MANIFEST.in +0 -0
  23. {nbdev-3.2.1 → nbdev-3.3.0}/README.md +0 -0
  24. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/cli.py +0 -0
  25. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/config.py +0 -0
  26. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/doclinks.py +0 -0
  27. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/export.py +0 -0
  28. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/extract_attachments.py +0 -0
  29. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/frontmatter.py +0 -0
  30. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/imports.py +0 -0
  31. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/maker.py +0 -0
  32. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/merge.py +0 -0
  33. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/qmd.py +0 -0
  34. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/quarto.py +0 -0
  35. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/scrubmagics.py +0 -0
  36. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/serve.py +0 -0
  37. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/serve_drv.py +0 -0
  38. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev/showdoc.py +0 -0
  39. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev.egg-info/dependency_links.txt +0 -0
  40. {nbdev-3.2.1 → nbdev-3.3.0}/nbdev.egg-info/top_level.txt +0 -0
  41. {nbdev-3.2.1 → nbdev-3.3.0}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: nbdev
3
- Version: 3.2.1
3
+ Version: 3.3.0
4
4
  Summary: Create delightful software with Jupyter Notebooks
5
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  Author-email: "Jeremy Howard and the fast.ai community" <j@fast.ai>
6
6
  License: Apache-2.0
@@ -13,18 +13,18 @@ Classifier: Natural Language :: English
13
13
  Classifier: Programming Language :: Python :: 3
14
14
  Classifier: Programming Language :: Python :: 3 :: Only
15
15
  Classifier: License :: OSI Approved :: Apache Software License
16
- Requires-Python: >=3.9
16
+ Requires-Python: >=3.10
17
17
  Description-Content-Type: text/markdown
18
18
  License-File: LICENSE
19
- Requires-Dist: fastcore>=1.14.6
20
- Requires-Dist: execnb>=0.2.4
19
+ Requires-Dist: fastcore>=2.1.3
20
+ Requires-Dist: execnb>=0.2.8
21
21
  Requires-Dist: astunparse
22
- Requires-Dist: ghapi>=2.0.0
22
+ Requires-Dist: ghapi>=2.0.2
23
23
  Requires-Dist: watchdog
24
24
  Requires-Dist: asttokens
25
25
  Requires-Dist: setuptools
26
26
  Requires-Dist: build
27
- Requires-Dist: fastgit
27
+ Requires-Dist: fastgit>=0.0.7
28
28
  Requires-Dist: pyyaml
29
29
  Requires-Dist: tomli; python_version < "3.11"
30
30
  Provides-Extra: dev
@@ -1,4 +1,4 @@
1
- __version__ = "3.2.1"
1
+ __version__ = "3.3.0"
2
2
 
3
3
  from .doclinks import nbdev_export
4
4
  from .showdoc import show_doc
@@ -5,14 +5,23 @@ d = { 'settings': { 'branch': 'main',
5
5
  'doc_host': 'https://nbdev.fast.ai',
6
6
  'git_url': 'https://github.com/AnswerDotAI/nbdev',
7
7
  'lib_path': 'nbdev'},
8
- 'syms': { 'nbdev.clean': { 'nbdev.clean._add_jupyter_hooks': ('api/clean.html#_add_jupyter_hooks', 'nbdev/clean.py'),
8
+ 'syms': { 'nbdev.clean': { 'nbdev.clean._add_attrs': ('api/clean.html#_add_attrs', 'nbdev/clean.py'),
9
+ 'nbdev.clean._add_jupyter_hooks': ('api/clean.html#_add_jupyter_hooks', 'nbdev/clean.py'),
10
+ 'nbdev.clean._canon_dirs': ('api/clean.html#_canon_dirs', 'nbdev/clean.py'),
11
+ 'nbdev.clean._cfg_drivers': ('api/clean.html#_cfg_drivers', 'nbdev/clean.py'),
9
12
  'nbdev.clean._clean_cell': ('api/clean.html#_clean_cell', 'nbdev/clean.py'),
10
13
  'nbdev.clean._clean_cell_output': ('api/clean.html#_clean_cell_output', 'nbdev/clean.py'),
11
14
  'nbdev.clean._clean_cell_output_id': ('api/clean.html#_clean_cell_output_id', 'nbdev/clean.py'),
15
+ 'nbdev.clean._cmt_dirs': ('api/clean.html#_cmt_dirs', 'nbdev/clean.py'),
16
+ 'nbdev.clean._dir_moves': ('api/clean.html#_dir_moves', 'nbdev/clean.py'),
12
17
  'nbdev.clean._git_root': ('api/clean.html#_git_root', 'nbdev/clean.py'),
18
+ 'nbdev.clean._hoist_nb_meta': ('api/clean.html#_hoist_nb_meta', 'nbdev/clean.py'),
13
19
  'nbdev.clean._nbdev_clean': ('api/clean.html#_nbdev_clean', 'nbdev/clean.py'),
14
20
  'nbdev.clean._reconfigure': ('api/clean.html#_reconfigure', 'nbdev/clean.py'),
21
+ 'nbdev.clean._rm_dir_lines': ('api/clean.html#_rm_dir_lines', 'nbdev/clean.py'),
15
22
  'nbdev.clean._skip_or_sub': ('api/clean.html#_skip_or_sub', 'nbdev/clean.py'),
23
+ 'nbdev.clean._to_comments': ('api/clean.html#_to_comments', 'nbdev/clean.py'),
24
+ 'nbdev.clean._to_meta': ('api/clean.html#_to_meta', 'nbdev/clean.py'),
16
25
  'nbdev.clean.clean_jupyter': ('api/clean.html#clean_jupyter', 'nbdev/clean.py'),
17
26
  'nbdev.clean.clean_nb': ('api/clean.html#clean_nb', 'nbdev/clean.py'),
18
27
  'nbdev.clean.nbdev_clean': ('api/clean.html#nbdev_clean', 'nbdev/clean.py'),
@@ -61,11 +70,20 @@ d = { 'settings': { 'branch': 'main',
61
70
  'nbdev.config.update_version': ('api/config.html#update_version', 'nbdev/config.py'),
62
71
  'nbdev.config.write_cells': ('api/config.html#write_cells', 'nbdev/config.py')},
63
72
  'nbdev.diff': { 'nbdev.diff._cell_changes': ('api/diff.html#_cell_changes', 'nbdev/diff.py'),
73
+ 'nbdev.diff._diff_order': ('api/diff.html#_diff_order', 'nbdev/diff.py'),
74
+ 'nbdev.diff._dline': ('api/diff.html#_dline', 'nbdev/diff.py'),
75
+ 'nbdev.diff._file_srcs': ('api/diff.html#_file_srcs', 'nbdev/diff.py'),
64
76
  'nbdev.diff._nb_srcdict': ('api/diff.html#_nb_srcdict', 'nbdev/diff.py'),
77
+ 'nbdev.diff._src': ('api/diff.html#_src', 'nbdev/diff.py'),
78
+ 'nbdev.diff._srcdict': ('api/diff.html#_srcdict', 'nbdev/diff.py'),
65
79
  'nbdev.diff.cell_diffs': ('api/diff.html#cell_diffs', 'nbdev/diff.py'),
66
80
  'nbdev.diff.changed_cells': ('api/diff.html#changed_cells', 'nbdev/diff.py'),
81
+ 'nbdev.diff.nb_diff': ('api/diff.html#nb_diff', 'nbdev/diff.py'),
82
+ 'nbdev.diff.nbdev_diff': ('api/diff.html#nbdev_diff', 'nbdev/diff.py'),
83
+ 'nbdev.diff.nbdev_diff_driver': ('api/diff.html#nbdev_diff_driver', 'nbdev/diff.py'),
67
84
  'nbdev.diff.nbs_pair': ('api/diff.html#nbs_pair', 'nbdev/diff.py'),
68
85
  'nbdev.diff.read_nb_from_git': ('api/diff.html#read_nb_from_git', 'nbdev/diff.py'),
86
+ 'nbdev.diff.render_diff': ('api/diff.html#render_diff', 'nbdev/diff.py'),
69
87
  'nbdev.diff.source_diff': ('api/diff.html#source_diff', 'nbdev/diff.py')},
70
88
  'nbdev.doclinks': { 'nbdev.doclinks.NbdevLookup': ('api/doclinks.html#nbdevlookup', 'nbdev/doclinks.py'),
71
89
  'nbdev.doclinks.NbdevLookup.__getitem__': ( 'api/doclinks.html#nbdevlookup.__getitem__',
@@ -193,17 +211,9 @@ d = { 'settings': { 'branch': 'main',
193
211
  'nbdev.process.Processor.__call__': ('api/process.html#processor.__call__', 'nbdev/process.py'),
194
212
  'nbdev.process.Processor.__init__': ('api/process.html#processor.__init__', 'nbdev/process.py'),
195
213
  'nbdev.process.Processor.cell': ('api/process.html#processor.cell', 'nbdev/process.py'),
196
- 'nbdev.process._dir_pre': ('api/process.html#_dir_pre', 'nbdev/process.py'),
197
- 'nbdev.process._directive': ('api/process.html#_directive', 'nbdev/process.py'),
198
214
  'nbdev.process._is_direc': ('api/process.html#_is_direc', 'nbdev/process.py'),
199
215
  'nbdev.process._mk_procs': ('api/process.html#_mk_procs', 'nbdev/process.py'),
200
- 'nbdev.process._norm_quarto': ('api/process.html#_norm_quarto', 'nbdev/process.py'),
201
- 'nbdev.process._partition_cell': ('api/process.html#_partition_cell', 'nbdev/process.py'),
202
- 'nbdev.process._quarto_re': ('api/process.html#_quarto_re', 'nbdev/process.py'),
203
- 'nbdev.process.extract_directives': ('api/process.html#extract_directives', 'nbdev/process.py'),
204
- 'nbdev.process.first_code_ln': ('api/process.html#first_code_ln', 'nbdev/process.py'),
205
216
  'nbdev.process.instantiate': ('api/process.html#instantiate', 'nbdev/process.py'),
206
- 'nbdev.process.nb_lang': ('api/process.html#nb_lang', 'nbdev/process.py'),
207
217
  'nbdev.process.opt_set': ('api/process.html#opt_set', 'nbdev/process.py')},
208
218
  'nbdev.processors': { 'nbdev.processors.FilterDefaults': ('api/processors.html#filterdefaults', 'nbdev/processors.py'),
209
219
  'nbdev.processors.FilterDefaults.__call__': ( 'api/processors.html#filterdefaults.__call__',
@@ -313,11 +323,17 @@ d = { 'settings': { 'branch': 'main',
313
323
  'nbdev.release.Release.changelog': ('api/release.html#release.changelog', 'nbdev/release.py'),
314
324
  'nbdev.release.Release.latest_notes': ('api/release.html#release.latest_notes', 'nbdev/release.py'),
315
325
  'nbdev.release.Release.release': ('api/release.html#release.release', 'nbdev/release.py'),
326
+ 'nbdev.release._check_changelog_base': ('api/release.html#_check_changelog_base', 'nbdev/release.py'),
316
327
  'nbdev.release._find_config': ('api/release.html#_find_config', 'nbdev/release.py'),
317
328
  'nbdev.release._get_conda_meta': ('api/release.html#_get_conda_meta', 'nbdev/release.py'),
329
+ 'nbdev.release._is_ancestor': ('api/release.html#_is_ancestor', 'nbdev/release.py'),
318
330
  'nbdev.release._issue_txt': ('api/release.html#_issue_txt', 'nbdev/release.py'),
319
331
  'nbdev.release._issues_txt': ('api/release.html#_issues_txt', 'nbdev/release.py'),
320
332
  'nbdev.release._load_json': ('api/release.html#_load_json', 'nbdev/release.py'),
333
+ 'nbdev.release._release_branch': ('api/release.html#_release_branch', 'nbdev/release.py'),
334
+ 'nbdev.release._release_head': ('api/release.html#_release_head', 'nbdev/release.py'),
335
+ 'nbdev.release._remote_shas': ('api/release.html#_remote_shas', 'nbdev/release.py'),
336
+ 'nbdev.release._require_release_branch': ('api/release.html#_require_release_branch', 'nbdev/release.py'),
321
337
  'nbdev.release._run': ('api/release.html#_run', 'nbdev/release.py'),
322
338
  'nbdev.release._write_yaml': ('api/release.html#_write_yaml', 'nbdev/release.py'),
323
339
  'nbdev.release.anaconda_upload': ('api/release.html#anaconda_upload', 'nbdev/release.py'),
@@ -351,6 +367,7 @@ d = { 'settings': { 'branch': 'main',
351
367
  'nbdev.showdoc.doc': ('api/showdoc.html#doc', 'nbdev/showdoc.py'),
352
368
  'nbdev.showdoc.show_doc': ('api/showdoc.html#show_doc', 'nbdev/showdoc.py'),
353
369
  'nbdev.showdoc.showdoc_nm': ('api/showdoc.html#showdoc_nm', 'nbdev/showdoc.py')},
370
+ 'nbdev.skill': {},
354
371
  'nbdev.sync': { 'nbdev.sync._mod_files': ('api/sync.html#_mod_files', 'nbdev/sync.py'),
355
372
  'nbdev.sync._to_absolute': ('api/sync.html#_to_absolute', 'nbdev/sync.py'),
356
373
  'nbdev.sync._update_mod': ('api/sync.html#_update_mod', 'nbdev/sync.py'),
@@ -13,6 +13,7 @@ from astunparse import unparse
13
13
  from textwrap import indent
14
14
 
15
15
  from fastcore.nbio import *
16
+ from fastcore.nbio import _directive, _dir_line, _meta_directives, _unparse_dir
16
17
  from fastcore.script import *
17
18
  from fastcore.utils import *
18
19
  from fastcore.xtras import *
@@ -93,11 +94,13 @@ def clean_nb(
93
94
  allowed_cell_metadata_keys:list=None, # Preserve the list of keys in cell level metadata
94
95
  clean_ids=True, # Remove ids from plaintext reprs?
95
96
  allowed_out_metadata_keys:list=None, # Preserve the list of keys in output metadata
97
+ repair:bool=True, # Fix structural problems first (see `repair_nb`)?
96
98
  ):
97
99
  "Clean `nb` from superfluous metadata"
98
- metadata_keys = {"kernelspec", "jekyll", "jupytext", "doc", "widgets"}
100
+ if repair: repair_nb(nb)
101
+ metadata_keys = {"kernelspec", "jekyll", "jupytext", "doc", "widgets", "nbdev"}
99
102
  if allowed_metadata_keys: metadata_keys.update(allowed_metadata_keys)
100
- cell_metadata_keys = {"hide_input"}
103
+ cell_metadata_keys = {"hide_input", "nbdev"}
101
104
  if allowed_cell_metadata_keys: cell_metadata_keys.update(allowed_cell_metadata_keys)
102
105
  out_meta_keys = set()
103
106
  if allowed_out_metadata_keys: out_meta_keys.update(allowed_out_metadata_keys)
@@ -126,14 +129,73 @@ def process_write(warn_msg, proc_nb, f_in, f_out=None, disp=False):
126
129
  warn(f'{warn_msg}')
127
130
  warn(e)
128
131
 
132
+ # %% ../nbs/api/11_clean.ipynb #f6e854ac
133
+ def _cmt_dirs(cell):
134
+ "Comment directives in `cell` as `{name: value}`, plus the partitioned `(dirs,code)` lines"
135
+ dirs,code = cell._partition()
136
+ return dict(t for t in (_directive(s, cell.lang_) for s in dirs) if t),dirs,code
137
+
138
+ def _rm_dir_lines(cell, dirs, code, names):
139
+ "Rewrite `cell` source without the directive lines in `names`"
140
+ cell.set_source(''.join([o for o in dirs if (t:=_directive(o, cell.lang_)) is None or t[0] not in names] + code))
141
+
142
+ def _to_meta(cell, names):
143
+ "Move comment directives in `names` to the cell's `nbdev` metadata key"
144
+ cmts,dirs,code = _cmt_dirs(cell)
145
+ move = {k:v for k,v in cmts.items() if k in names}
146
+ if not move: return
147
+ cell.setdefault('metadata',{}).setdefault('nbdev',{}).update({k:_unparse_dir(v) for k,v in move.items()})
148
+ _rm_dir_lines(cell, dirs, code, move)
149
+
150
+ def _to_comments(cell, names):
151
+ "Move directives in `names` from the cell's `nbdev` metadata key to comments"
152
+ move = {k:v for k,v in _meta_directives(cell).items() if k in names}
153
+ if not move: return
154
+ nbd = cell.metadata['nbdev']
155
+ for k in move: nbd.pop(k, None)
156
+ if not nbd: del cell.metadata['nbdev']
157
+ dirs,code = cell._partition()
158
+ cell.set_source(''.join(dirs + [_dir_line(k, v, cell.lang_) for k,v in move.items()] + code))
159
+
160
+ # %% ../nbs/api/11_clean.ipynb #6e8d013d
161
+ def _canon_dirs(cell):
162
+ "Rewrite `cell`'s comment directives in canonical form (colon-separated, bare for true)"
163
+ dirs,code = cell._partition()
164
+ new = [o if (t:=_directive(o, cell.lang_)) is None else _dir_line(*t, lang=cell.lang_) for o in dirs]
165
+ if new != dirs: cell.set_source(''.join(new + code))
166
+
167
+ def _hoist_nb_meta(nb, names=('default_exp',)):
168
+ "Move notebook-scope directives in `names` to notebook metadata, dropping any cell left empty"
169
+ for c in list(nb.cells):
170
+ cmts,dirs,code = _cmt_dirs(c)
171
+ move = {k:v for k,v in cmts.items() if k in names}
172
+ if not move: continue
173
+ nb.setdefault('metadata',{}).setdefault('nbdev',{}).update({k:_unparse_dir(v) for k,v in move.items()})
174
+ _rm_dir_lines(c, dirs, code, move)
175
+ left = set(c.directives) - {'hide'}
176
+ if not left and not ''.join(c._partition()[1]).strip(): nb.cells.remove(c)
177
+
178
+ def _dir_moves(nb, dirs=False, to_meta=None, to_comments=None, nb_meta=False):
179
+ "Apply directive migrations to loaded notebook dict `nb` in place"
180
+ nbo = dict2nb(nb)
181
+ if to_meta:
182
+ for c in nbo.cells: _to_meta(c, to_meta.split())
183
+ if to_comments:
184
+ for c in nbo.cells: _to_comments(c, to_comments.split())
185
+ if nb_meta: _hoist_nb_meta(nbo)
186
+ if dirs:
187
+ for c in nbo.cells: _canon_dirs(c)
188
+ nb['cells'],nb['metadata'] = nbo.cells,nbo.metadata
189
+
129
190
  # %% ../nbs/api/11_clean.ipynb #714357ce
130
- def _nbdev_clean(nb, path=None, clear_all=None):
191
+ def _nbdev_clean(nb, path=None, clear_all=None, repair=True, dirs=False, to_meta=None, to_comments=None, nb_meta=False):
131
192
  cfg = get_config(path=path)
132
193
  clear_all = clear_all or cfg.clear_all
133
194
  allowed_metadata_keys = cfg.get("allowed_metadata_keys") or []
134
195
  allowed_cell_metadata_keys = cfg.get("allowed_cell_metadata_keys") or []
135
196
  allowed_out_metadata_keys = cfg.get("allowed_out_metadata_keys") or []
136
- clean_nb(nb, clear_all, allowed_metadata_keys, allowed_cell_metadata_keys, cfg.clean_ids, allowed_out_metadata_keys)
197
+ if dirs or to_meta or to_comments or nb_meta: _dir_moves(nb, dirs, to_meta, to_comments, nb_meta)
198
+ clean_nb(nb, clear_all, allowed_metadata_keys, allowed_cell_metadata_keys, cfg.clean_ids, allowed_out_metadata_keys, repair=repair)
137
199
  if path: nbdev_trust.__wrapped__(path)
138
200
 
139
201
  # %% ../nbs/api/11_clean.ipynb #6af3b9d4
@@ -142,11 +204,16 @@ def nbdev_clean(
142
204
  fname:str=None, # A notebook name or glob to clean
143
205
  clear_all:bool=False, # Remove all cell metadata and cell outputs?
144
206
  disp:bool=False, # Print the cleaned outputs
145
- stdin:bool=False # Read notebook from input stream
207
+ stdin:bool=False, # Read notebook from input stream
208
+ repair:bool_arg=True, # Fix structural problems, e.g. stray outputs on non-code cells (see `repair_nb`)?
209
+ dirs:bool=False, # Rewrite comment directives in canonical form?
210
+ to_meta:str=None, # Space-separated directive names to move from comments to cell metadata
211
+ to_comments:str=None, # Space-separated directive names to move from cell metadata to comments
212
+ nb_meta:bool=False # Move `default_exp` into notebook metadata?
146
213
  ):
147
214
  "Clean all notebooks in `fname` to avoid merge conflicts"
148
215
  # Git hooks will pass the notebooks in stdin
149
- _clean = partial(_nbdev_clean, clear_all=clear_all)
216
+ _clean = partial(_nbdev_clean, clear_all=clear_all, repair=repair, dirs=dirs, to_meta=to_meta, to_comments=to_comments, nb_meta=nb_meta)
150
217
  _write = partial(process_write, warn_msg='Failed to clean notebook', proc_nb=_clean)
151
218
  if stdin: return _write(f_in=sys.stdin, f_out=sys.stdout)
152
219
  if fname is None: fname = get_config().nbs_path
@@ -193,8 +260,29 @@ def _git_root():
193
260
  except OSError: return None
194
261
 
195
262
  # %% ../nbs/api/11_clean.ipynb #e6083614
263
+ def _add_attrs(path, attrs):
264
+ "Append missing attribute lines to git attributes file at `path`"
265
+ txt = path.read_text() if path.exists() else ''
266
+ have = [l.split() for l in txt.splitlines()] # whitespace-insensitive: nbdime writes its lines with tabs
267
+ for attr in attrs:
268
+ if attr.split() not in have:
269
+ if txt and not txt.endswith('\n'): txt+='\n'
270
+ txt += attr+'\n'
271
+ path.write_text(txt)
272
+
273
+ def _cfg_drivers(loc, merge, diff):
274
+ "Define the `jupyternotebook` merge/diff drivers via `git config <loc>`"
275
+ if merge:
276
+ run(f'git config {loc} merge.jupyternotebook.name "resolve conflicts with nbdev_fix"')
277
+ run(f'git config {loc} merge.jupyternotebook.driver "nbdev-merge %O %A %B %P"')
278
+ if diff: run(f'git config {loc} diff.jupyternotebook.command nbdev-diff-driver')
279
+
196
280
  @call_parse
197
- def nbdev_install_hooks():
281
+ def nbdev_install_hooks(
282
+ merge:bool_arg=True, # Install the notebook merge driver?
283
+ diff:bool_arg=True, # Install the notebook diff driver?
284
+ globally:bool_arg=False # Define the drivers in `~/.gitconfig` and the global attributes file, instead of repo files?
285
+ ):
198
286
  "Install Jupyter and git hooks to automatically clean, trust, and fix merge conflicts in notebooks"
199
287
  cfg_path = Path.home()/'.jupyter'
200
288
  cfg_path.mkdir(exist_ok=True)
@@ -204,6 +292,16 @@ def nbdev_install_hooks():
204
292
  upd = _add_jupyter_hooks(src, fn)
205
293
  if upd is not None: fn.write_text(upd)
206
294
 
295
+ nbdev_attrs = (['*.ipynb merge=jupyternotebook'] if merge else []) + (['*.ipynb diff=jupyternotebook'] if diff else [])
296
+ if globally:
297
+ _cfg_drivers('--global', merge, diff)
298
+ rc,p = run('git config --global --get core.attributesFile', ignore_ex=True)
299
+ if rc: p = os.environ.get('XDG_CONFIG_HOME', '~/.config') + '/git/attributes'
300
+ attrs_path = Path(p).expanduser()
301
+ attrs_path.parent.mkdir(parents=True, exist_ok=True)
302
+ _add_attrs(attrs_path, nbdev_attrs)
303
+ return print("Hooks are installed globally.")
304
+
207
305
  repo_path = _git_root()
208
306
  if repo_path is None:
209
307
  sys.stderr.write('Not in a git repository, git hooks cannot be installed.\n')
@@ -215,7 +313,8 @@ def nbdev_install_hooks():
215
313
  os.chmod(fn, os.stat(fn).st_mode | stat.S_IEXEC)
216
314
 
217
315
  cmd = 'git config --local include.path ../.gitconfig'
218
- (repo_path/'.gitconfig').write_text(f'''# Generated by nbdev-install-hooks
316
+ cfg_fn = repo_path/'.gitconfig'
317
+ cfg_fn.write_text(f'''# Generated by nbdev-install-hooks
219
318
  #
220
319
  # If you need to disable this instrumentation do:
221
320
  # git config --local --unset include.path
@@ -223,19 +322,10 @@ def nbdev_install_hooks():
223
322
  # To restore:
224
323
  # {cmd}
225
324
  #
226
- [merge "nbdev-merge"]
227
- name = resolve conflicts with nbdev_fix
228
- driver = nbdev-merge %O %A %B %P
229
325
  ''')
326
+ _cfg_drivers(f'--file "{cfg_fn}"', merge, diff)
230
327
  run(cmd)
231
328
 
232
- attrs_path = repo_path/'.gitattributes'
233
- nbdev_attr = '*.ipynb merge=nbdev-merge\n'
234
- try:
235
- attrs = attrs_path.read_text()
236
- if nbdev_attr not in attrs:
237
- if not attrs.endswith('\n'): attrs+='\n'
238
- attrs_path.write_text(attrs+nbdev_attr)
239
- except FileNotFoundError: attrs_path.write_text(nbdev_attr)
329
+ _add_attrs(repo_path/'.gitattributes', nbdev_attrs)
240
330
 
241
331
  print("Hooks are installed.")
@@ -0,0 +1,198 @@
1
+ """Cell-level git diffs for notebooks
2
+
3
+ Docs: https://nbdev.fast.ai/api/diff.html.md"""
4
+
5
+ # AUTOGENERATED! DO NOT EDIT! File to edit: ../nbs/api/19_diff.ipynb.
6
+
7
+ # %% auto #0
8
+ __all__ = ['read_nb_from_git', 'nbs_pair', 'changed_cells', 'source_diff', 'cell_diffs', 'render_diff', 'nb_diff',
9
+ 'nbdev_diff_driver', 'nbdev_diff']
10
+
11
+ # %% ../nbs/api/19_diff.ipynb #10c8ad0b
12
+ import json
13
+ from fastcore.utils import *
14
+ from fastcore.meta import delegates
15
+ from fastcore.script import *
16
+ from difflib import unified_diff
17
+ from subprocess import CalledProcessError
18
+ from typing import Annotated
19
+ from fastgit import Git
20
+ from fastcore.nbio import *
21
+ from .doclinks import nbglob
22
+
23
+ # %% ../nbs/api/19_diff.ipynb #a8981115
24
+ def read_nb_from_git(
25
+ g:Git, # The git object
26
+ path, # The path to the notebook (absolute or relative to git root)
27
+ ref=None # The git ref to read from (e.g. HEAD); None for working dir
28
+ )->AttrDict: # The notebook; empty if `path` doesn't exist at `ref`
29
+ "Read notebook from git ref (e.g. HEAD) at path, or working dir if ref is None"
30
+ path = Path(path)
31
+ if path.is_absolute(): path = path.relative_to(g.top())
32
+ if ref is None: return read_nb(g.top()/path)
33
+ try: raw = g.show(f'{ref}:{path}', raise_exc=True)
34
+ except CalledProcessError as e:
35
+ if " in '" not in str(e.stderr): raise
36
+ return new_nb([])
37
+ return dict2nb(json.loads(raw))
38
+
39
+ # %% ../nbs/api/19_diff.ipynb #3ac25702
40
+ def _src(c): return c.get('source','')
41
+
42
+ def _srcdict(nb, f=noop):
43
+ "Dict of cell id->`f(cell)`, with positional fallback ids for pre-4.5 notebooks"
44
+ return {c.get('id', f'c{c.idx_}'): f(c) for c in nb.cells}
45
+
46
+ def _nb_srcdict(g:Git, nb_path, ref=None, f=noop): return _srcdict(read_nb_from_git(g, nb_path, ref), f)
47
+
48
+ # %% ../nbs/api/19_diff.ipynb #27ff9a7b
49
+ def nbs_pair(
50
+ nb_path, # Path to the notebook
51
+ ref_a='HEAD', # First git ref (None for working dir)
52
+ ref_b=None, # Second git ref (None for working dir)
53
+ f=noop # Function to call on contents
54
+ ): # Tuple of two notebooks
55
+ "NBs at two refs; None means working dir. By default provides HEAD and working dir"
56
+ nb_path = Path(nb_path).resolve()
57
+ g = Git(nb_path.parent)
58
+ return _nb_srcdict(g, nb_path, ref_a, f), _nb_srcdict(g, nb_path, ref_b, f)
59
+
60
+ # %% ../nbs/api/19_diff.ipynb #958aeaf8
61
+ def _cell_changes(
62
+ nb_path, # Path to the notebook
63
+ fn, # function to call to get dict values
64
+ ref_a='HEAD', # First git ref (None for working dir)
65
+ ref_b=None, # Second git ref (None for working dir)
66
+ adds=True, # Include cells in b but not in a
67
+ changes=True, # Include cells with different content
68
+ dels=False, # Include cells in a but not in b
69
+ metadata=False, # Consider cell metadata when comparing
70
+ outputs=False # Consider cell outputs when comparing
71
+ ): # Dict of results
72
+ "Apply fn(cell_id, old_content, new_content) to changed cells between two refs"
73
+ def cell_content(c):
74
+ res = c.get('source', '')
75
+ if metadata: res += '\n# metadata: ' + json.dumps(c.get('metadata', {}), sort_keys=True)
76
+ if outputs: res += '\n# outputs: ' + json.dumps(c.get('outputs', []), sort_keys=True)
77
+ return res
78
+ old,new = nbs_pair(nb_path, ref_a, ref_b, f=cell_content)
79
+ res = {}
80
+ if adds: res |= {cid: fn(cid, '', new[cid]) for cid in new if cid not in old}
81
+ if changes: res |= {cid: fn(cid, old[cid], new[cid]) for cid in new if cid in old and new[cid] != old[cid]}
82
+ if dels: res |= {cid: fn(cid, old[cid], '') for cid in old if cid not in new}
83
+ return res
84
+
85
+ # %% ../nbs/api/19_diff.ipynb #6a723bc8
86
+ @delegates(_cell_changes)
87
+ def changed_cells(nb_path, **kwargs):
88
+ "Return set of cell IDs for changed/added/deleted cells between two refs"
89
+ def f(cid,o,n): return cid
90
+ return set(_cell_changes(nb_path, f, **kwargs).keys())
91
+
92
+ # %% ../nbs/api/19_diff.ipynb #079eedb0
93
+ def source_diff(
94
+ old_source, # Original source string
95
+ new_source # New source string
96
+ ): # Unified diff string
97
+ "Return unified diff string for source change"
98
+ return '\n'.join(unified_diff(old_source.splitlines(), new_source.splitlines(), lineterm=''))
99
+
100
+ # %% ../nbs/api/19_diff.ipynb #38216afa
101
+ @delegates(_cell_changes)
102
+ def cell_diffs(nb_path, **kwargs):
103
+ "{cell_id:diff} for changed/added/deleted cells between two refs"
104
+ def f(cid,o,n): return source_diff(o,n)
105
+ return _cell_changes(nb_path, f, **kwargs)
106
+
107
+ # %% ../nbs/api/19_diff.ipynb #d670e58e
108
+ _dcolors = {'-':'\x1b[31m', '+':'\x1b[32m', '@':'\x1b[36m', '#':'\x1b[1m', '# ':'\x1b[1;7m'}
109
+
110
+ def _dline(l, maxlen=120, color=False):
111
+ "Truncate `l` to `maxlen` with an ellipsis, optionally colored by its leading diff marker"
112
+ if maxlen and len(l)>maxlen: l = l[:maxlen]+'…'
113
+ c = (_dcolors.get(l[:2]) or _dcolors.get(l[:1])) if color else None
114
+ return f'{c}{l}\x1b[0m' if c else l
115
+
116
+ # %% ../nbs/api/19_diff.ipynb #342fc231
117
+ def _diff_order(old, new):
118
+ "All cell ids in notebook order: `new`'s order, with deleted ids after their predecessor in `old`"
119
+ res,olds = list(new),list(old)
120
+ for i,cid in enumerate(olds):
121
+ if cid in new: continue
122
+ pred = first(o for o in reversed(olds[:i]) if o in res)
123
+ res.insert(res.index(pred)+1 if pred else 0, cid)
124
+ return res
125
+
126
+ # %% ../nbs/api/19_diff.ipynb #eb3fc128
127
+ def render_diff(
128
+ old, # `{id: source}` for the old version of the notebook
129
+ new, # `{id: source}` for the new version
130
+ maxlen:int=120, # Truncate diff lines to this width (falsy: no limit)
131
+ color:bool=False # Add ANSI colors?
132
+ ): # One section per changed cell, in notebook order
133
+ "Render cell-level changes between two notebooks as truncated unified diffs"
134
+ res = []
135
+ for cid in _diff_order(old, new):
136
+ o,n = old.get(cid,''), new.get(cid,'')
137
+ if cid in old and cid in new and o==n: continue
138
+ kind = 'modified' if cid in old and cid in new else 'added' if cid in new else 'deleted'
139
+ lines = [f'## {kind} {cid}:'] + source_diff(o,n).splitlines()[2:]
140
+ res.append('\n'.join(_dline(l, maxlen, color) for l in lines))
141
+ return '\n\n'.join(res)
142
+
143
+ # %% ../nbs/api/19_diff.ipynb #7f90d675
144
+ def nb_diff(
145
+ nb_path, # Path to the notebook
146
+ ref_a='HEAD', # First git ref
147
+ ref_b=None, # Second git ref; None for working dir
148
+ maxlen:int=120, # Truncate diff lines to this width (falsy: no limit)
149
+ color:bool=False # Add ANSI colors?
150
+ ): # Rendered diff of changed cells
151
+ "Rendered cell diff for `nb_path` between two refs"
152
+ a,b = nbs_pair(nb_path, ref_a, ref_b, f=_src)
153
+ return render_diff(a, b, maxlen=maxlen, color=color)
154
+
155
+ # %% ../nbs/api/19_diff.ipynb #ab9f0b26
156
+ def _file_srcs(path):
157
+ "`{id: source}` from an ipynb file; `{}` when missing or empty (e.g. `/dev/null`)"
158
+ p = Path(path)
159
+ if not p.exists() or not p.stat().st_size: return {}
160
+ return _srcdict(read_nb(p), _src)
161
+
162
+ _pos = Annotated[str, {'opt':False, 'nargs':'?'}] # optional positional CLI arg, as git passes them
163
+
164
+ @call_parse
165
+ def nbdev_diff_driver(
166
+ path:str, # Repo path of the notebook being diffed
167
+ old_file:_pos=None, # Pre-change file (git temp file, or /dev/null)
168
+ old_hex:_pos=None, # Pre-change blob hash
169
+ old_mode:_pos=None, # Pre-change file mode
170
+ new_file:_pos=None, # Post-change file
171
+ new_hex:_pos=None, # Post-change blob hash
172
+ new_mode:_pos=None, # Post-change file mode
173
+ rename_to:_pos=None, # New repo path, when git detected a rename
174
+ similarity:_pos=None, # Similarity score, when git detected a rename
175
+ maxlen:int=120 # Truncate diff lines to this width (0 for no limit)
176
+ ):
177
+ "Git external diff driver for notebooks; installed by `nbdev-install-hooks`"
178
+ if not new_file: return print(f'unmerged: {path}')
179
+ color = sys.stdout.isatty() or os.environ.get('GIT_PAGER_IN_USE')=='true'
180
+ res = render_diff(_file_srcs(old_file), _file_srcs(new_file), maxlen=maxlen, color=color)
181
+ if not res: return
182
+ print(_dline(f'# {path}', 0, color))
183
+ print(res, end='\n\n')
184
+
185
+ # %% ../nbs/api/19_diff.ipynb #2604c719
186
+ @call_parse
187
+ def nbdev_diff(
188
+ path:str=None, # Notebook or directory (default: project's notebooks folder)
189
+ ref_a:str='HEAD', # First git ref
190
+ ref_b:str=None, # Second git ref (default: working directory)
191
+ maxlen:int=120, # Truncate diff lines to this width (0 for no limit)
192
+ color:bool_arg=None # Add ANSI colors? (default: only if stdout is a tty)
193
+ ):
194
+ "Cell-level diffs for changed notebooks between two git refs"
195
+ if color is None: color = sys.stdout.isatty()
196
+ for p in sorted(nbglob(path)):
197
+ res = nb_diff(p, ref_a, ref_b, maxlen=maxlen, color=color)
198
+ if res: print(_dline(f'# {p}', 0, color), res, sep='\n', end='\n\n')
@@ -9,6 +9,7 @@ __all__ = ['MigrateProc', 'fp_md_fm', 'migrate_nb', 'migrate_md', 'nbdev_migrate
9
9
 
10
10
  # %% ../nbs/api/16_migrate.ipynb #5b687fa0-dc50-48df-8bfc-e98df34e7572
11
11
  from .process import *
12
+ from fastcore.nbio import first_code_ln, langs
12
13
  from .frontmatter import *
13
14
  from .frontmatter import _fm2dict, _re_fm_md, _dict2fm, _insertfm
14
15
  from .processors import *
@@ -0,0 +1,88 @@
1
+ """A notebook processor
2
+
3
+ Docs: https://nbdev.fast.ai/api/process.html.md"""
4
+
5
+ # AUTOGENERATED! DO NOT EDIT! File to edit: ../nbs/api/03_process.ipynb.
6
+
7
+ # %% auto #0
8
+ __all__ = ['opt_set', 'instantiate', 'NBProcessor', 'Processor']
9
+
10
+ # %% ../nbs/api/03_process.ipynb #59172c3d
11
+ from .config import *
12
+ from .maker import *
13
+ from .imports import *
14
+
15
+ from fastcore.nbio import *
16
+ from fastcore.nbio import _meta_directives
17
+ from fastcore.script import *
18
+ from fastcore.imports import *
19
+
20
+ from collections import defaultdict
21
+
22
+ # %% ../nbs/api/03_process.ipynb #e6701805
23
+ def opt_set(var, newval):
24
+ "newval if newval else var"
25
+ return newval if newval else var
26
+
27
+ # %% ../nbs/api/03_process.ipynb #98c9d556
28
+ def instantiate(x, **kwargs):
29
+ "Instantiate `x` if it's a type"
30
+ return x(**kwargs) if isinstance(x,type) else x
31
+
32
+ def _mk_procs(procs, nb): return L(procs).map(instantiate, nb=nb)
33
+
34
+ # %% ../nbs/api/03_process.ipynb #ab147efe
35
+ def _is_direc(f): return getattr(f, '__name__', '-')[-1]=='_'
36
+
37
+ # %% ../nbs/api/03_process.ipynb #7c81f109
38
+ class NBProcessor:
39
+ "Process cells and nbdev comments in a notebook"
40
+ def __init__(self, path=None, procs=None, nb=None, debug=False, rm_directives=True, process=False):
41
+ self.nb = read_nb(path) if nb is None else nb
42
+ self.lang = nb_lang(self.nb)
43
+ for cell in self.nb.cells: cell.directives_ = cell.directives
44
+ nbdirs = {k:v for k,v in _meta_directives(self.nb).items() if not any(k in c.directives_ for c in self.nb.cells)}
45
+ if nbdirs:
46
+ fc = first(c for c in self.nb.cells if c.cell_type=='code')
47
+ if fc is not None: fc.directives_ = nbdirs | fc.directives_
48
+ if rm_directives:
49
+ for cell in self.nb.cells: cell.remove_directives(quarto=rm_directives=='quarto')
50
+ self.procs = _mk_procs(procs, nb=self.nb)
51
+ self.debug,self.rm_directives = debug,rm_directives
52
+ if process: self.process()
53
+
54
+ def _process_cell(self, proc, cell):
55
+ if not hasattr(cell,'source'): return
56
+ if cell.cell_type=='code' and cell.directives_:
57
+ # Option 1: `proc` is directive name with `_` suffix
58
+ f = getattr(proc, '__name__', '-').rstrip('_')
59
+ if f in cell.directives_: self._process_comment(proc, cell, f)
60
+
61
+ # Option 2: `proc` contains a method named `_{directive}_`
62
+ for cmd in cell.directives_:
63
+ f = getattr(proc, f'_{cmd}_', None)
64
+ if f: self._process_comment(f, cell, cmd)
65
+ if callable(proc) and not _is_direc(proc): cell = opt_set(cell, proc(cell))
66
+
67
+ def _process_comment(self, proc, cell, cmd):
68
+ args = cell.directives_[cmd].split()
69
+ if self.debug: print(cmd, args, proc)
70
+ return proc(cell, *args)
71
+
72
+ def _proc(self, proc):
73
+ if hasattr(proc,'begin'): proc.begin()
74
+ for cell in self.nb.cells: self._process_cell(proc, cell)
75
+ if hasattr(proc,'end'): proc.end()
76
+ self.nb.cells = [c for c in self.nb.cells if c and getattr(c,'source',None) is not None]
77
+ for i,cell in enumerate(self.nb.cells): cell.idx_ = i
78
+
79
+ def process(self):
80
+ "Process all cells with all processors"
81
+ for proc in self.procs: self._proc(proc)
82
+
83
+ # %% ../nbs/api/03_process.ipynb #fa1f8668
84
+ class Processor:
85
+ "Base class for processors"
86
+ def __init__(self, nb): self.nb = nb
87
+ def cell(self, cell): pass
88
+ def __call__(self, cell): return self.cell(cell)
@@ -68,7 +68,7 @@ def cell_lang(cell): return nested_attr(cell, 'metadata.language', 'python')
68
68
  def _want_doc(c):
69
69
  d = c.directives_
70
70
  show_d = set(['export', 'exports', 'exec_doc']).intersection(d)
71
- return c.source and c.cell_type=='code' and show_d and 'hide' not in d and d.get('include:') != ['false']
71
+ return c.source and c.cell_type=='code' and show_d and 'hide' not in d and d.get('include') != 'false'
72
72
 
73
73
  class add_show_docs(Processor):
74
74
  "Add show_doc cells after exported cells, unless they are already documented"
@@ -234,7 +234,7 @@ def _do_eval(cell):
234
234
  if not cell.source or 'nbdev_export'+'()' in cell.source: return
235
235
  trees = cell.parsed_()
236
236
  if cell.cell_type != 'code' or not trees: return
237
- if cell.directives_.get('eval:', [''])[0].lower() == 'false': return
237
+ if cell.directives_.get('eval', '').lower() == 'false': return
238
238
 
239
239
  _show_dirs = {'export','exports','exporti','exec_doc'}
240
240
  if cell.directives_.keys() & _show_dirs: return True
@@ -292,6 +292,6 @@ class FilterDefaults:
292
292
 
293
293
  def nb_proc(self, nb):
294
294
  "Get an `NBProcessor` with these processors"
295
- return NBProcessor(nb=nb, procs=self.procs())
295
+ return NBProcessor(nb=nb, procs=self.procs(), rm_directives='quarto')
296
296
 
297
297
  def __call__(self, nb): return self.nb_proc(nb).process()