napistu 0.1.0__tar.gz

napistu-0.1.0/LICENSE

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+MIT License
+
+Copyright (c) 2025 Calico
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

napistu-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: napistu
+Version: 0.1.0
+Summary: Connecting high-dimensional data to curated pathways
+Home-page: https://github.com/napistu/napistu-py
+Author: Sean Hackett
+Author-email: seanmchackett@gmail.com
+Project-URL: Bug Tracker, https://github.com/napistu/napistu-py/issues
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: Jinja2
+Requires-Dist: PyYAML==6.*
+Requires-Dist: click==8.*
+Requires-Dist: click-logging
+Requires-Dist: fs==2.4.*
+Requires-Dist: fs-gcsfs==1.5.*
+Requires-Dist: igraph
+Requires-Dist: matplotlib==3.*
+Requires-Dist: numpy==1.26.*
+Requires-Dist: pandas==1.5.*
+Requires-Dist: pydantic==2.*
+Requires-Dist: python-libsbml
+Requires-Dist: requests>=2
+Requires-Dist: scipy==1.14.*
+Requires-Dist: tqdm
+Requires-Dist: zeep==3.*
+Provides-Extra: dev
+Requires-Dist: black==25.*; extra == "dev"
+Requires-Dist: ipykernel; extra == "dev"
+Requires-Dist: pre-commit==3.3.*; extra == "dev"
+Requires-Dist: pytest==7.*; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Requires-Dist: ruff; extra == "dev"
+Requires-Dist: testcontainers; extra == "dev"
+Provides-Extra: rpy2
+Requires-Dist: pyarrow==18.0.0; extra == "rpy2"
+Requires-Dist: rpy2==3.5.*; extra == "rpy2"
+Requires-Dist: rpy2-arrow==0.1.1; extra == "rpy2"
+Dynamic: license-file
+
+# Napistu Python Library
+
+This Python package hosts the majority of the algorithmic code for the [Napistu project](https://github.com/napistu/napistu).
+
+## Setup
+
+Currently the only way to use this repository is to clone the repo and perform a local install. e.g., from this directory:
+
+```bash
+pip install .
+```

napistu-0.1.0/README.md

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+# Napistu Python Library
+
+This Python package hosts the majority of the algorithmic code for the [Napistu project](https://github.com/napistu/napistu).
+
+## Setup
+
+Currently the only way to use this repository is to clone the repo and perform a local install. e.g., from this directory:
+
+```bash
+pip install .
+```

napistu-0.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools >= 77.0.3"]
+build-backend = "setuptools.build_meta"

napistu-0.1.0/setup.cfg

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+[metadata]
+name = napistu
+version = 0.1.0
+description = Connecting high-dimensional data to curated pathways
+long_description = file: README.md
+long_description_content_type = text/markdown
+url = https://github.com/napistu/napistu-py
+author = Sean Hackett
+author_email = seanmchackett@gmail.com
+license_files = LICENSE
+classifiers = 
+	License :: OSI Approved :: MIT License
+	Operating System :: OS Independent
+	Programming Language :: Python :: 3
+	Programming Language :: Python :: 3 :: Only
+project_urls = 
+	Bug Tracker = https://github.com/napistu/napistu-py/issues
+
+[options]
+packages = find:
+install_requires = 
+	Jinja2
+	PyYAML==6.*
+	click==8.*
+	click-logging
+	fs==2.4.*
+	fs-gcsfs==1.5.*
+	igraph
+	matplotlib==3.*
+	numpy==1.26.*
+	pandas==1.5.*
+	pydantic==2.*
+	python-libsbml
+	requests>=2
+	scipy==1.14.*
+	tqdm
+	zeep==3.*
+python_requires = >=3.11
+package_dir = 
+	= src
+
+[options.packages.find]
+where = src
+
+[options.entry_points]
+console_scripts = 
+	cpr = cpr.__main__:cli
+
+[options.extras_require]
+dev = 
+	black==25.*
+	ipykernel
+	pre-commit==3.3.*
+	pytest==7.*
+	pytest-cov
+	ruff
+	testcontainers
+rpy2 = 
+	pyarrow==18.0.0
+	rpy2==3.5.*
+	rpy2-arrow==0.1.1
+
+[egg_info]
+tag_build = 
+tag_date = 0
+

napistu-0.1.0/setup.py

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+from setuptools import setup
+
+if __name__ == "__main__":
+    setup()

napistu-0.1.0/src/napistu/__init__.py

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+from __future__ import annotations
+
+from importlib.metadata import PackageNotFoundError
+from importlib.metadata import version
+
+__version__ = "0.2.0"
+
+try:
+    __version__ = version("calicolabs-cpr")
+except PackageNotFoundError:
+    # package is not installed
+    pass