napari-tmidas 0.2.4__tar.gz → 0.2.5__tar.gz

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Files changed (88) hide show
  1. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/PKG-INFO +2 -1
  2. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/README.md +1 -0
  3. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_version.py +3 -3
  4. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/PKG-INFO +2 -1
  5. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.github/dependabot.yml +0 -0
  6. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.github/workflows/test_and_deploy.yml +0 -0
  7. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.gitignore +0 -0
  8. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.napari-hub/DESCRIPTION.md +0 -0
  9. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.napari-hub/config.yml +0 -0
  10. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.pre-commit-config.yaml +0 -0
  11. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/LICENSE +0 -0
  12. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/MANIFEST.in +0 -0
  13. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/advanced_processing.md +0 -0
  14. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/basic_processing.md +0 -0
  15. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/cellpose_segmentation.md +0 -0
  16. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/grid_view_overlay.md +0 -0
  17. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/intensity_label_filter.md +0 -0
  18. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/regionprops_analysis.md +0 -0
  19. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/regionprops_summary.md +0 -0
  20. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/docs/trackastra_tracking.md +0 -0
  21. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/examples/grid_overlay_example.py +0 -0
  22. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/examples/intensity_filter_example.py +0 -0
  23. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/examples/regionprops_example.py +0 -0
  24. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/pyproject.toml +0 -0
  25. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/setup.cfg +0 -0
  26. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/__init__.py +0 -0
  27. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_crop_anything.py +0 -0
  28. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_env_manager.py +0 -0
  29. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_file_conversion.py +0 -0
  30. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_file_selector.py +0 -0
  31. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_label_inspection.py +0 -0
  32. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_processing_worker.py +0 -0
  33. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_reader.py +0 -0
  34. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_registry.py +0 -0
  35. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_roi_colocalization.py +0 -0
  36. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_sample_data.py +0 -0
  37. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_crop_anything.py +0 -0
  38. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_env_manager.py +0 -0
  39. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_file_selector.py +0 -0
  40. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_grid_view_overlay.py +0 -0
  41. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_init.py +0 -0
  42. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_intensity_label_filter.py +0 -0
  43. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_label_inspection.py +0 -0
  44. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_processing_basic.py +0 -0
  45. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_processing_worker.py +0 -0
  46. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_reader.py +0 -0
  47. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_regionprops_analysis.py +0 -0
  48. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_registry.py +0 -0
  49. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_sample_data.py +0 -0
  50. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_scipy_filters.py +0 -0
  51. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_skimage_filters.py +0 -0
  52. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_split_channels.py +0 -0
  53. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_spotiflow.py +0 -0
  54. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_tyx_display_fix.py +0 -0
  55. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_ui_utils.py +0 -0
  56. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_widget.py +0 -0
  57. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_windows_basic.py +0 -0
  58. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_tests/test_writer.py +0 -0
  59. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_ui_utils.py +0 -0
  60. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_widget.py +0 -0
  61. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_writer.py +0 -0
  62. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/napari.yaml +0 -0
  63. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/__init__.py +0 -0
  64. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/basic.py +0 -0
  65. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/careamics_denoising.py +0 -0
  66. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/careamics_env_manager.py +0 -0
  67. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/cellpose_env_manager.py +0 -0
  68. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/cellpose_segmentation.py +0 -0
  69. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/colocalization.py +0 -0
  70. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/file_compression.py +0 -0
  71. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/grid_view_overlay.py +0 -0
  72. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/intensity_label_filter.py +0 -0
  73. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/regionprops_analysis.py +0 -0
  74. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/sam2_env_manager.py +0 -0
  75. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/sam2_mp4.py +0 -0
  76. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/scipy_filters.py +0 -0
  77. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/skimage_filters.py +0 -0
  78. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/spotiflow_detection.py +0 -0
  79. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/spotiflow_env_manager.py +0 -0
  80. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/timepoint_merger.py +0 -0
  81. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/processing_functions/trackastra_tracking.py +0 -0
  82. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/SOURCES.txt +0 -0
  83. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/dependency_links.txt +0 -0
  84. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/entry_points.txt +0 -0
  85. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/requires.txt +0 -0
  86. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/top_level.txt +0 -0
  87. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/test_grid_overlay.py +0 -0
  88. {napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/tox.ini +0 -0
{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: napari-tmidas
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- Version: 0.2.4
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+ Version: 0.2.5
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  Summary: A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues
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  Author: Marco Meer
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  Author-email: marco.meer@pm.me
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  [![PyPI](https://img.shields.io/pypi/v/napari-tmidas.svg?color=green)](https://pypi.org/project/napari-tmidas)
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  [![Python Version](https://img.shields.io/pypi/pyversions/napari-tmidas.svg?color=green)](https://python.org)
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  [![Downloads](https://static.pepy.tech/badge/napari-tmidas)](https://pepy.tech/project/napari-tmidas)
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+ [![DOI](https://zenodo.org/badge/698257324.svg)](https://zenodo.org/badge/latestdoi/698257324)
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  [![tests](https://github.com/macromeer/napari-tmidas/workflows/tests/badge.svg)](https://github.com/macromeer/napari-tmidas/actions)
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  This napari plugin consists of a growing collection of pipelines for fast batch processing of confocal and whole slide microscopy images of biological tissues. This is a WIP and based on the [T-MIDAS terminal](https://github.com/MercaderLabAnatomy/T-MIDAS).
{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/README.md RENAMED
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  [![PyPI](https://img.shields.io/pypi/v/napari-tmidas.svg?color=green)](https://pypi.org/project/napari-tmidas)
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  [![Downloads](https://static.pepy.tech/badge/napari-tmidas)](https://pepy.tech/project/napari-tmidas)
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+ [![DOI](https://zenodo.org/badge/698257324.svg)](https://zenodo.org/badge/latestdoi/698257324)
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  This napari plugin consists of a growing collection of pipelines for fast batch processing of confocal and whole slide microscopy images of biological tissues. This is a WIP and based on the [T-MIDAS terminal](https://github.com/MercaderLabAnatomy/T-MIDAS).
{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas/_version.py RENAMED
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{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/src/napari_tmidas.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: napari-tmidas
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  Summary: A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues
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  Author: Marco Meer
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  Author-email: marco.meer@pm.me
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  This napari plugin consists of a growing collection of pipelines for fast batch processing of confocal and whole slide microscopy images of biological tissues. This is a WIP and based on the [T-MIDAS terminal](https://github.com/MercaderLabAnatomy/T-MIDAS).
{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/.gitignore RENAMED
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{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/LICENSE RENAMED
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{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/MANIFEST.in RENAMED
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{napari_tmidas-0.2.4 → napari_tmidas-0.2.5}/setup.cfg RENAMED
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