napari-spatialdata 0.5.7__tar.gz → 0.6.0__tar.gz

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/.github/release.yml

@@ -4,6 +4,7 @@ changelog:
       - release-ignore
     authors:
       - pre-commit-ci
+      - pre-commit-ci[bot]
   categories:
     - title: Added
       labels:

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: napari-spatialdata
-Version: 0.5.7
+Version: 0.6.0
 Summary: Interactive visualization of spatial omics data with napari
 Home-page: https://github.com/scverse/napari-spatialdata.git
 Author: giovanni palla

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/docs/conf.py

@@ -23,7 +23,7 @@ print(napari_spatialdata.__file__)  # noqa: T201
 info = metadata("napari-spatialdata")
 project_name = info["Name"]
 author = info["Author"]
-copyright = f"{datetime.now():%Y}, {author}."
+copyright = f"{datetime.now():%Y}, {author}"
 version = info["Version"]
 repository_url = f"https://github.com/scverse/{project_name}"
 

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/src/napari_spatialdata/_version.py

@@ -1,7 +1,14 @@
 # file generated by setuptools-scm
 # don't change, don't track in version control
 
-__all__ = ["__version__", "__version_tuple__", "version", "version_tuple"]
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
 
 TYPE_CHECKING = False
 if TYPE_CHECKING:
@@ -9,13 +16,19 @@ if TYPE_CHECKING:
     from typing import Union
 
     VERSION_TUPLE = Tuple[Union[int, str], ...]
+    COMMIT_ID = Union[str, None]
 else:
     VERSION_TUPLE = object
+    COMMIT_ID = object
 
 version: str
 __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
+commit_id: COMMIT_ID
+__commit_id__: COMMIT_ID
 
-__version__ = version = '0.5.7'
-__version_tuple__ = version_tuple = (0, 5, 7)
+__version__ = version = '0.6.0'
+__version_tuple__ = version_tuple = (0, 6, 0)
+
+__commit_id__ = commit_id = 'gc95e3e271'

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/src/napari_spatialdata/_viewer.py

@@ -18,7 +18,7 @@ from shapely import Polygon
 from spatialdata import get_element_annotators, get_element_instances
 from spatialdata._core.query.relational_query import _left_join_spatialelement_table
 from spatialdata._types import ArrayLike
-from spatialdata.models import PointsModel, ShapesModel, TableModel, force_2d, get_channels
+from spatialdata.models import PointsModel, ShapesModel, TableModel, force_2d, get_channel_names
 from spatialdata.transformations import Affine, Identity
 
 from napari_spatialdata._model import DataModel
@@ -473,7 +473,7 @@ class SpatialDataViewer(QObject):
         affine = _get_transform(sdata.images[original_name], selected_cs)
         rgb_image, rgb = _adjust_channels_order(element=sdata.images[original_name])
 
-        channels = ("RGB(A)",) if rgb else get_channels(sdata.images[original_name])
+        channels = ("RGB(A)",) if rgb else get_channel_names(sdata.images[original_name])
 
         adata = AnnData(shape=(0, len(channels)), var=pd.DataFrame(index=channels))
 

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/src/napari_spatialdata.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: napari-spatialdata
-Version: 0.5.7
+Version: 0.6.0
 Summary: Interactive visualization of spatial omics data with napari
 Home-page: https://github.com/scverse/napari-spatialdata.git
 Author: giovanni palla

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/tests/conftest.py

@@ -25,7 +25,7 @@ from spatialdata.models import TableModel
 
 from napari_spatialdata.utils._test_utils import export_figure, save_image
 
-OFFSCREEN = os.environ.get('QT_QPA_PLATFORM', '') == 'offscreen'
+OFFSCREEN = os.environ.get("QT_QPA_PLATFORM", "") == "offscreen"
 
 HERE: Path = Path(__file__).parent
 

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/tests/test_interactive.py

@@ -11,7 +11,7 @@ from spatialdata import SpatialData
 from spatialdata.models import Image2DModel
 
 from napari_spatialdata._interactive import Interactive
-from tests.conftest import PlotTester, PlotTesterMeta, OFFSCREEN
+from tests.conftest import OFFSCREEN, PlotTester, PlotTesterMeta
 
 ARM_PROBLEM = (
     parse_version(version("numpy")) < parse_version("2") and sys.platform == "darwin" and platform.machine() == "arm64"

{napari_spatialdata-0.5.7 → napari_spatialdata-0.6.0}/tests/test_widgets.py

@@ -91,7 +91,7 @@ def test_change_layer(
     sdata_blobs: SpatialData,
 ) -> None:
     table = sdata_blobs["table"].copy()
-    table.obs["region"] = "blobs_labels"
+    table.obs["region"] = pd.Categorical(["blobs_labels"] * table.n_obs)
     table.uns["spatialdata_attrs"]["region"] = "blobs_labels"
     table.var_names = pd.Index([i + "_second" for i in table.var_names])
     sdata_blobs["second_table"] = table