napari-spatialdata 0.5.4__tar.gz → 0.5.5__tar.gz

napari_spatialdata-0.5.5/.github/release.yml

@@ -0,0 +1,23 @@
+changelog:
+  exclude:
+    labels:
+      - release-ignore
+    authors:
+      - pre-commit-ci
+      - dependabot
+  categories:
+    - title: Major
+      labels:
+        - "release-major"
+    - title: Minor
+      labels:
+        - "release-minor"
+    - title: Changed
+      labels:
+        - "release-changed"
+    - title: Fixed
+      labels:
+        - "release-fixed"
+    - title: Other Changes
+      labels:
+        - "*"

napari_spatialdata-0.5.5/.github/workflows/release.yml

@@ -0,0 +1,30 @@
+name: Release
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  build-and-inspect-package:
+    name: Build & inspect package.
+    runs-on: ubuntu-latest
+    if: startsWith(github.ref, 'refs/tags/v')
+    steps:
+      - uses: actions/checkout@v4
+      - uses: hynek/build-and-inspect-python-package@v2
+
+  upload-to-pypi:
+    name: Upload package to PyPI
+    needs: build-and-inspect-package
+    runs-on: ubuntu-latest
+    if: startsWith(github.ref, 'refs/tags/v')
+
+    steps:
+      - name: Download built artifact to dist/
+        uses: actions/download-artifact@v4
+        with:
+          name: Packages
+          path: dist
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.TWINE_API_KEY }}

{napari_spatialdata-0.5.4 → napari_spatialdata-0.5.5}/.github/workflows/test.yml

@@ -21,6 +21,7 @@ jobs:
     name: ${{ matrix.platform }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.platform }}
     strategy:
+      fail-fast: false
       matrix:
         platform: [ubuntu-latest, macos-latest] # [ubuntu-latest, windows-latest, macos-latest]
         python-version: ["3.10", "3.12"]
@@ -61,7 +62,7 @@ jobs:
           PLATFORM: ${{ matrix.platform }}
 
       - name: Coverage
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
 
       - name: Archive figures generated during testing
         if: always()

{napari_spatialdata-0.5.4 → napari_spatialdata-0.5.5}/.pre-commit-config.yaml

@@ -7,13 +7,13 @@ default_stages:
 minimum_pre_commit_version: 2.9.3
 repos:
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.2
+    rev: v1.14.1
     hooks:
       - id: mypy
         additional_dependencies: [numpy>=1.23]
         exclude: docs
   - repo: https://github.com/psf/black
-    rev: 24.8.0
+    rev: 24.10.0
     hooks:
       - id: black
         additional_dependencies: [toml]
@@ -22,7 +22,7 @@ repos:
     hooks:
       - id: prettier
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: detect-private-key
       - id: check-merge-conflict
@@ -45,11 +45,11 @@ repos:
       - id: check-toml
       - id: requirements-txt-fixer
   - repo: https://github.com/asottile/blacken-docs
-    rev: 1.18.0
+    rev: 1.19.1
     hooks:
       - id: blacken-docs
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.8
+    rev: v0.9.1
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

{napari_spatialdata-0.5.4 → napari_spatialdata-0.5.5}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: napari-spatialdata
-Version: 0.5.4
+Version: 0.5.5
 Summary: Interactive visualization of spatial omics data with napari
 Home-page: https://github.com/scverse/napari-spatialdata.git
 Author: giovanni palla
@@ -38,12 +38,13 @@ Requires-Dist: numpy
 Requires-Dist: packaging
 Requires-Dist: pandas
 Requires-Dist: pillow
+Requires-Dist: pyqtgraph
 Requires-Dist: qtpy
 Requires-Dist: scanpy
 Requires-Dist: scipy
 Requires-Dist: shapely
 Requires-Dist: scikit-learn
-Requires-Dist: spatialdata>=0.2.1
+Requires-Dist: spatialdata>=0.2.6
 Requires-Dist: superqt
 Requires-Dist: typing_extensions>=4.8.0
 Requires-Dist: vispy
@@ -53,6 +54,7 @@ Provides-Extra: test
 Requires-Dist: loguru; extra == "test"
 Requires-Dist: pytest; extra == "test"
 Requires-Dist: pytest-cov; extra == "test"
+Requires-Dist: pytest-mock; extra == "test"
 Requires-Dist: pytest-qt; extra == "test"
 Requires-Dist: pre-commit>=2.9.0; extra == "test"
 Provides-Extra: doc

napari_spatialdata-0.5.5/docs/changelog.md

@@ -0,0 +1,4 @@
+# Changelog
+
+Please refer directly to the [Releases](https://github.com/scverse/napari-spatialdata/releases) section on GitHub, where you can find curated release notes for each release.
+For developers, please consult the [contributing guide](https://github.com/scverse/spatialdata/blob/main/docs/contributing.md), which explains how to keep release notes are up-to-date at each release.

napari_spatialdata-0.5.5/docs/contributing.md

@@ -0,0 +1,3 @@
+# Contributing guide
+
+Please refer to the [contribution guide from the `spatialdata` repository](https://github.com/scverse/spatialdata/blob/main/docs/contributing.md).

{napari_spatialdata-0.5.4 → napari_spatialdata-0.5.5}/docs/index.md

@@ -10,6 +10,7 @@ api.md
 cli.md
 contributing.md
 limitations.md
+changelog.md
 references.md
 ```
 
@@ -23,4 +24,5 @@ cli.md
 notebooks/nanostring_analysis
 notebooks/mibitof_analysis
 notebooks/scatterwidget
+notebooks/scatterwidget_annotation
 ```