napari-layer-statistics 1.0.0__tar.gz

napari_layer_statistics-1.0.0/.github/ISSUE_TEMPLATE/bug_report.yml

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+name: "\U0001F41B Bug Report"
+description: Report a bug encountered while using napari-layer-statistics
+labels:
+  - "bug"
+
+body:
+  - type: markdown
+    attributes:
+      value: |
+        Thanks for taking the time to report this issue! 🙏🏼
+
+        Please fill out the sections below to help us reproduce the problem.
+
+  - type: textarea
+    id: bug-report
+    attributes:
+      label: "\U0001F41B Bug Report"
+      description: "Please provide a clear and concise description of the bug."
+      placeholder: "What went wrong? What did you expect to happen?"
+    validations:
+      required: true
+
+  - type: textarea
+    id: steps-to-reproduce
+    attributes:
+      label: "\U0001F4A1 Steps to Reproduce"
+      description: "Please provide a minimal code snippet or list of steps to reproduce the bug."
+      placeholder: |
+        1. Go to '...'
+        2. Click on '....'
+        3. Scroll down to '....'
+        4. See error
+    validations:
+      required: true
+
+  - type: textarea
+    id: expected-behavior
+    attributes:
+      label: "\U0001F4A1 Expected Behavior"
+      description: "Please provide a clear and concise description of what you expected to happen."
+      placeholder: "What did you expect to happen?"
+
+  - type: textarea
+    id: environment
+    attributes:
+      label: "\U0001F30E Environment"
+      description: |
+        Please provide detailed information regarding your environment. Please paste the output of `napari --info` here or copy  the information from the "napari info" dialog in the napari Help menu.
+
+        Otherwise, please provide information regarding your operating system (OS), Python version, napari version, Qt backend and version, Qt platform, method of installation, and any other relevant information related to your environment.
+
+
+      placeholder: |
+        napari: 0.5.0
+        Platform: macOS-13.2.1-arm64-arm-64bit
+        System: MacOS 13.2.1
+        Python: 3.11.4 (main, Aug 7 2023, 20:34:01) [Clang 14.0.3 (clang-1403.0.22.14.1)]
+        Qt: 5.15.10
+        PyQt5: 5.15.10
+        NumPy: 1.25.1
+        SciPy: 1.11.1
+        Dask: 2023.7.1
+        VisPy: 0.13.0
+        magicgui: 0.7.2
+        superqt: 0.5.4
+        in-n-out: 0.1.8
+        app-model: 0.2.0
+        npe2: 0.7.2
+
+        OpenGL:
+        - GL version: 2.1 Metal - 83
+        - MAX_TEXTURE_SIZE: 16384
+
+        Screens:
+        - screen 1: resolution 1512x982, scale 2.0
+
+        Settings path:
+        - /Users/.../napari/napari_5c6993c40c104085444cfc0c77fa392cb5cb8f56/settings.yaml
+    validations:
+      required: true
+
+  - type: textarea
+    id: additional-context
+    attributes:
+        label: "\U0001F4A1 Additional Context"
+        description: "Please provide any additional information or context regarding the problem here."
+        placeholder: "Add any other context about the problem here."

napari_layer_statistics-1.0.0/.github/ISSUE_TEMPLATE/documentation.md

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+---
+name: "\U0001F4DA Documentation"
+about: Report an issue with napari-layer-statistics documentation
+title: ''
+labels: documentation
+assignees: ''
+
+---
+
+## 📚 Documentation
+<!-- A clear and concise description of the documentation that needs to be created/updated -->

napari_layer_statistics-1.0.0/.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: "\U0001F680 Feature Request"
+about: Submit a proposal/request for a new napari-layer-statistics feature
+title: ''
+labels: feature
+assignees: ''
+
+---
+
+## 🚀 Feature
+<!-- A clear and concise description of the feature proposal -->
+
+## Motivation
+
+<!-- Please outline the motivation for the proposal. Is your feature request related to a problem? e.g., I'm always frustrated when [...]. If this is related to another GitHub issue, please link here too -->
+
+## Pitch
+
+<!-- A clear and concise description of what you want to happen. -->
+
+## Alternatives
+
+<!-- A clear and concise description of any alternative solutions or features you've considered, if any. -->
+
+## Additional context
+
+<!-- Add any other context or screenshots about the feature request here. -->

napari_layer_statistics-1.0.0/.github/ISSUE_TEMPLATE/task.md

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+---
+name: "\U0001F9F0 Task"
+about: Maintenance, follow-ups, and other defined to-do items
+title: ''
+labels: task
+assignees: ''
+
+---
+
+## 🧰 Task
+<!-- A clear and concise description of the task -->

napari_layer_statistics-1.0.0/.github/PULL_REQUEST_TEMPLATE.md

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+# References and relevant issues
+<!-- What relevant resources were used in the creation of this PR?
+If this PR addresses an existing issue on the repo,
+please link to that issue here as "Closes #(issue-number)"
+If this PR depends on another PR/issue (even in another repo),
+please link to it with "Depends on #PR-number" or "Depends on org/repo#PR-number"
+-->
+
+# Description
+<!-- What does this pull request (PR) do? Is it a new feature, a bug fix,
+an improvement, or something else? Why is it necessary? If relevant, please add
+a screenshot or a screen capture: "An image is worth a thousand words!" -->

napari_layer_statistics-1.0.0/.github/workflows/test_and_deploy.yml

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+# Manual CI only. PyPI publishing is handled locally.
+name: tests
+
+on:
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: ${{ matrix.platform }} py${{ matrix.python-version }}
+    runs-on: ${{ matrix.platform }}
+    timeout-minutes: 30
+    permissions:
+      id-token: write  # needed for codecov OIDC authentication
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [ubuntu-latest, windows-latest, macos-latest]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Setup python
+        uses: astral-sh/setup-uv@v7
+        with:
+          python-version: ${{ matrix.python-version }}
+          activate-environment: "true"
+      - name: Install Windows OpenGL
+        uses: pyvista/setup-headless-display-action@v4.2
+        with:
+          qt: true
+          wm: herbstluftwm
+
+
+      # note: if you need dependencies from conda, considering using
+      # setup-miniconda: https://github.com/conda-incubator/setup-miniconda
+      # and
+      # tox-conda: https://github.com/tox-dev/tox-conda
+      # this runs the platform-specific tests declared in tox.ini
+      - name: Test with tox
+        run: uvx --with tox-gh-actions tox
+        env:
+          PLATFORM: ${{ matrix.platform }}
+
+      - name: Coverage
+        uses: codecov/codecov-action@v5
+        with:
+          use_oidc: true  # reliable tokenless codecov uploads
+
+  build-and-inspect-package:
+    name: Build & inspect package.
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v6
+      - uses: hynek/build-and-inspect-python-package@v2

napari_layer_statistics-1.0.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+.napari_cache
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask instance folder
+instance/
+
+# Sphinx documentation
+docs/_build/
+
+# MkDocs documentation
+/site/
+
+# PyBuilder
+target/
+
+# Pycharm and VSCode
+.idea/
+venv/
+.vscode/
+
+# IPython Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# OS
+.DS_Store
+
+# written by setuptools_scm
+**/_version.py

napari_layer_statistics-1.0.0/.napari-hub/DESCRIPTION.md

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+<!-- This file is a placeholder for customizing description of your plugin 
+on the napari hub if you wish. The readme file will be used by default if
+you wish not to do any customization for the napari hub listing.
+
+If you need some help writing a good description, check out our 
+[guide](https://github.com/chanzuckerberg/napari-hub/wiki/Writing-the-Perfect-Description-for-your-Plugin)
+-->
+
+The developer has not yet provided a napari-hub specific description.

napari_layer_statistics-1.0.0/.napari-hub/config.yml

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+# You may use this file to customize how your plugin page appears
+# on the napari hub: https://www.napari-hub.org/
+# See their wiki for details https://github.com/chanzuckerberg/napari-hub/wiki
+
+# Please note that this file should only be used IN ADDITION to entering
+# metadata fields (such as summary, description, authors, and various URLS)
+# in your standard python package metadata (e.g. setup.cfg, setup.py, or
+# pyproject.toml), when you would like those fields to be displayed
+# differently on the hub than in the napari application.

napari_layer_statistics-1.0.0/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v6.0.0
+    hooks:
+      - id: check-docstring-first
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+        exclude: ^\.napari-hub/.*
+      - id: check-yaml # checks for correct yaml syntax for github actions ex.
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.15.5
+    hooks:
+      - id: ruff-check
+      - id: ruff-format
+  - repo: https://github.com/napari/napari-plugin-checks
+    rev: v0.3.0
+    hooks:
+      - id: napari-plugin-checks
+  # https://mypy.readthedocs.io/en/stable/
+  # you may wish to add this as well!
+  # - repo: https://github.com/pre-commit/mirrors-mypy
+  #   rev: v1.19.0
+  #   hooks:
+  #     - id: mypy

napari_layer_statistics-1.0.0/LICENSE

@@ -0,0 +1,202 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
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+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "{}"
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+   Copyright (c) 2026 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
+
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+       http://www.apache.org/licenses/LICENSE-2.0
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napari_layer_statistics-1.0.0/PKG-INFO

@@ -0,0 +1,88 @@
+Metadata-Version: 2.4
+Name: napari-layer-statistics
+Version: 1.0.0
+Summary: Compact layer inspector for napari: fast statistics, editable geometry/camera fields, and clipboard-friendly summaries in one widget.
+Author: Lars Krämer
+Author-email: lars.kraemer@dkfz-heidelberg.de
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/MIC-DKFZ/napari-layer-statistics
+Project-URL: Code, https://github.com/MIC-DKFZ/napari-layer-statistics
+Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Framework :: napari
+Classifier: Intended Audience :: Developers
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Image Processing
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: napari-toolkit
+Requires-Dist: qtpy
+Provides-Extra: all
+Requires-Dist: napari[all]; extra == "all"
+Dynamic: license-file
+
+# Napari Layer Statistics
+
+`napari-layer-statistics` is a compact layer inspector for napari: fast statistics, editable geometry/camera fields, and clipboard-friendly summaries in one widget.
+
+Features:
+- Computations in background processes to keep napari viewer responsive
+- metadata panel for selected layer (`Name`, `Type`, `Dtype`)
+- geometry panel for selected layer (`Array Shape`) with editable fields for `Spacing`, `Origin` and `Direction`
+- camera panel with editable `NDisplay`, `Displayed axis`, `Zoom`, `Center`, `Angle`, and `Canvas (w, h)`
+- `Image` statistics (grayscale/RGB/RGBA) with optional heavy-compute toggle
+- `Labels` statistics with class overview (`Number Classes`, `Classes present`) and per-class voxel percentages
+- class color picker in labels table (currently supported for cyclic label colormaps)
+- copy/paste camera settings from clipboard
+- copy/paste class colors from clipboard
+- `Copy stats` for a global metadata/geometry/statistics report (camera/colors intentionally excluded)
+
+## Install
+
+```bash
+pip install napari-layer-statistics
+```
+
+or with napari included:
+
+```bash
+pip install "napari-layer-statistics[all]"
+```
+
+## Use
+
+<img src="https://github.com/MIC-DKFZ/napari-layer-statistics/raw/main/imgs/GUI.png"  width="1200">
+
+Open the widget in napari:
+
+```text
+Plugins > napari-layer-statistics > Layer Statistics
+```
+
+## License
+
+Apache-2.0
+
+# Acknowledgments
+
+<p align="left">
+  <img src="https://github.com/MIC-DKFZ/napari-layer-statistics/raw/main/imgs/Logos/HI_Logo.png" width="150"> &nbsp;&nbsp;&nbsp;&nbsp;
+  <img src="https://github.com/MIC-DKFZ/napari-layer-statistics/raw/main/imgs/Logos/DKFZ_Logo.png" width="500">
+</p>
+
+This repository is developed and maintained by the Applied Computer Vision Lab (ACVL)
+of [Helmholtz Imaging](https://www.helmholtz-imaging.de/) and the
+[Division of Medical Image Computing](https://www.dkfz.de/en/medical-image-computing) at DKFZ.
+
+This repository was generated with [copier] using the [napari-plugin-template].
+
+[copier]: https://copier.readthedocs.io/en/stable/
+[napari-plugin-template]: https://github.com/napari/napari-plugin-template