nanodisort 0.1.0__tar.gz

nanodisort-0.1.0/.github/workflows/build.yml

@@ -0,0 +1,59 @@
+name: Build
+
+on:
+  push:
+    tags: ["v*"]
+  workflow_dispatch:
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v3.4.1
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
+
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Build sdist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  upload_pypi:
+    name: Publish to PyPI
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+    environment:
+      name: pypi
+      url: https://pypi.org/p/nanodisort
+    permissions:
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+
+      - uses: pypa/gh-action-pypi-publish@release/v1

nanodisort-0.1.0/.github/workflows/lint.yml

@@ -0,0 +1,8 @@
+name: Lint
+on: [ push, pull_request ]
+jobs:
+  ruff:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/ruff-action@v3

nanodisort-0.1.0/.github/workflows/test.yml

@@ -0,0 +1,49 @@
+name: Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  test:
+    name: Test on ${{ matrix.os }} / Python ${{ matrix.python-version }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+        with:
+          enable-cache: true
+
+      - name: Install dependencies
+        run: |
+          uv sync --all-packages --all-extras
+
+      - name: Build extension
+        run: |
+          uv pip install -ve .
+
+      - name: Run tests
+        run: |
+          uv run pytest --cov=nanodisort --cov-report=xml --cov-report=term
+
+      - name: Upload coverage to Codecov
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
+        uses: codecov/codecov-action@v4
+        with:
+          file: ./coverage.xml
+          fail_ci_if_error: false

nanodisort-0.1.0/.gitignore

@@ -0,0 +1,14 @@
+__pycache__/
+.cmake
+.DS_Store
+.venv
+*.egg-info
+*.py[oc]
+build/
+dist/
+docs/_build/
+wheels/
+.vscode/
+.idea/
+.ipynb_checkpoints/
+CLAUDE.md

nanodisort-0.1.0/.pre-commit-config.yaml

@@ -0,0 +1,23 @@
+repos:
+  - repo: local
+    hooks:
+      - id: uv-export-docs
+        name: Export docs requirements
+        language: system
+        entry: uv run task docs-lock
+        files: ^(uv\.lock|pyproject\.toml)$
+        pass_filenames: false
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.14.7
+    hooks:
+      - id: ruff
+        args: [--fix]
+      - id: ruff-format
+  - repo: https://github.com/ComPWA/taplo-pre-commit
+    rev: v0.9.3
+    hooks:
+      - id: taplo-format
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.8.1
+    hooks:
+      - id: nbstripout

nanodisort-0.1.0/.python-version

@@ -0,0 +1 @@
+3.12

nanodisort-0.1.0/.readthedocs.yaml

@@ -0,0 +1,15 @@
+version: 2
+
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "3.12"
+
+python:
+  install:
+    - method: pip
+      path: .
+    - requirements: docs/requirements.txt
+
+sphinx:
+  configuration: docs/conf.py

nanodisort-0.1.0/AGENTS.md

@@ -0,0 +1,93 @@
+# AGENTS.md
+
+This file provides guidance to coding agents when working with this repository.
+
+## Project Overview
+
+nanodisort is a Python binding for cdisort, a C implementation of the DISORT (Discrete Ordinates Radiative Transfer) solver. It provides a Pythonic interface to solve the radiative transfer equation in plane-parallel atmospheres with support for multiple scattering, absorption, emission, and various boundary conditions.
+
+## Build & Development Commands
+
+```bash
+# Setup development environment
+uv sync --dev
+
+# (Re)build C++ extension module
+uv pip install -ve .
+
+# Run all tests
+uv run task test
+
+# Run tests with coverage
+uv run task test-cov
+
+# Run a single test file
+uv run pytest tests/test_disotest.py -v
+
+# Run a specific test
+uv run pytest tests/test_disotest.py::TestDisort01::test_case_1a -v
+
+# Lint
+uv run task lint
+
+# Format
+uv run task format
+
+# Check (lint + format check)
+uv run task check
+
+# Build docs
+uv run task docs
+```
+
+## Architecture
+
+### Directory Structure
+
+- `src/nanodisort/` - Python package with C++ bindings
+- `src/nanodisort/_core.cpp` - nanobind C++ extension wrapping cdisort
+- `src/nanodisort/utils/phase_functions.py` - Phase function moment generators
+- `ext/cdisort-2.1.3/` - Vendored cdisort C library
+- `tests/` - pytest test suite
+- `benchmarks/` - pytest-benchmark suite
+
+### Build System
+
+- scikit-build-core for Python/CMake integration
+- nanobind for C++17/Python bindings
+- CMake builds cdisort as a static library, then links to the `_core` extension
+
+### Core Components
+
+**DisortState** (`__init__.py` wraps `_core.cpp`): Main solver interface
+
+- Configure dimensions: `nstr`, `nlyr`, `nmom`, `ntau`, `numu`, `nphi`
+- Set flags: `usrtau`, `usrang`, `lamber`, `planck`, `onlyfl`, `quiet`, `intensity_correction`, `spher`
+- Set boundary conditions: `fbeam`, `umu0`, `phi0`, `fisot`, `albedo`, etc.
+- Set optical properties: `dtauc` (layer optical thicknesses), `ssalb` (single scattering albedo), `pmom` (phase function moments)
+- Call `allocate()` then `solve()`
+- Read outputs: `rfldir`, `rfldn`, `flup`, `dfdt`, `uu` (intensity), etc.
+
+**Phase Functions** (`utils/phase_functions.py`): Generate Legendre moment arrays
+
+- `isotropic(nmom)`, `rayleigh(nmom)`, `henyey_greenstein(gg, nmom)`
+- `haze_l(nmom)`, `cloud_c1(nmom)` - tabulated aerosol/cloud phase functions
+
+### Array Conventions
+
+- C++ bindings handle Fortran-to-C array order conversion automatically
+- `pmom` array shape: `(nmom_nstr+1, nlyr)` in C order
+- `uu` intensity output shape: `(numu, ntau, nphi)` in C order
+
+### Testing
+
+- `test_disotest.py` - Ported tests from cdisort's disotest.c, validated against Van de Hulst, Sweigart, Garcia-Siewert benchmarks
+- `test_core.py` - Basic solver functionality
+- `test_batch.py` - Batch solve tests
+- `test_error_handling.py` - Error condition tests
+
+## Key Implementation Details
+
+- Error handling: cdisort calls a registered callback that throws C++ exceptions, converted to Python RuntimeError by nanobind
+- Memory: `DisortState.allocate()` must be called after setting dimensions and before setting arrays or calling `solve()`
+- The `nmom` parameter controls phase function truncation; set `nmom >= nstr` for proper scattering

nanodisort-0.1.0/CHANGELOG.md

@@ -0,0 +1,5 @@
+# nanodisort changelog
+
+## v0.1.0 (13th April 2026)
+
+*Initial release.*

nanodisort-0.1.0/CITATION.cff

@@ -0,0 +1,15 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+type: software
+title: nanodisort
+abstract: Python bindings for CDISORT, a C implementation of the DISORT (Discrete Ordinates Radiative Transfer) solver for plane-parallel atmospheres.
+version: 0.1.0
+license: GPL-3.0-or-later
+repository-code: https://github.com/eradiate/nanodisort
+authors:
+  - family-names: Leroy
+    given-names: Vincent
+    email: vincent.leroy@rayference.eu
+  - family-names: Emde
+    given-names: Claudia
+    email: claudia.emde@rayference.eu

nanodisort-0.1.0/CMakeLists.txt

@@ -0,0 +1,52 @@
+# SPDX-FileCopyrightText: 2025 Rayference
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+cmake_minimum_required(VERSION 3.15...3.27)
+project(nanodisort VERSION 0.1.0 LANGUAGES C CXX)
+
+# Set C++17 standard
+set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+# Find Python and nanobind
+find_package(Python 3.9 REQUIRED COMPONENTS Interpreter Development.Module)
+find_package(nanobind CONFIG REQUIRED)
+find_package(Threads REQUIRED)
+
+# cdisort library sources
+set(CDISORT_SOURCES
+    ext/cdisort-2.1.3/cdisort.c
+    ext/cdisort-2.1.3/locate.c
+)
+
+set(CDISORT_HEADERS
+    ext/cdisort-2.1.3/cdisort.h
+    ext/cdisort-2.1.3/locate.h
+)
+
+# Build static cdisort library
+add_library(cdisort STATIC ${CDISORT_SOURCES} ${CDISORT_HEADERS})
+target_include_directories(cdisort PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/ext/cdisort-2.1.3)
+target_compile_options(cdisort PRIVATE
+    -O3
+    -fPIC  # Position independent code for shared library
+)
+target_link_libraries(cdisort PUBLIC m)  # Link math library
+
+# Python extension module using nanobind
+nanobind_add_module(_core
+    src/nanodisort/_core.cpp
+    src/nanodisort/thread_pool.cpp
+    NB_STATIC  # Use static linking with nanobind
+)
+
+# Link cdisort library to Python extension
+target_link_libraries(_core PRIVATE cdisort Threads::Threads)
+target_include_directories(_core PRIVATE
+    ${CMAKE_CURRENT_SOURCE_DIR}/ext/cdisort-2.1.3
+    ${CMAKE_CURRENT_SOURCE_DIR}/src/nanodisort
+)
+
+# Install the extension module
+install(TARGETS _core LIBRARY DESTINATION nanodisort COMPONENT python)

nanodisort-0.1.0/LICENSES/GPL-2.0-or-later.txt

@@ -0,0 +1,117 @@
+GNU GENERAL PUBLIC LICENSE
+Version 2, June 1991
+
+Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+
+Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.
+
+Preamble
+
+The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Lesser General Public License instead.) You can apply it to your programs, too.
+
+When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things.
+
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+
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+
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+
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+
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+The precise terms and conditions for copying, distribution and modification follow.
+
+TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you".
+
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+
+1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program.
+
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+
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+
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+
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+
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+4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance.
+
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+
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+
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+
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+
+8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License.
+
+9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns.
+
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+
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+
+END OF TERMS AND CONDITIONS
+
+How to Apply These Terms to Your New Programs
+
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+
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+
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+
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+
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+
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+
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