mx-bluesky 1.5.11__tar.gz → 1.5.12__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/.github/dependabot.yml +3 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/.github/workflows/_container.yml +43 -25
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/.vscode/settings.json +7 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/Dockerfile.blueapi +6 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/Dockerfile.hyperion +6 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/PKG-INFO +6 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/conftest.py +3 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/docs/developer/general/explanations/callback_and_run_logic.rst +2 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/docs/developer/general/how-to/create-a-release.rst +3 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/docs/developer/general/how-to/deploy-a-release.rst +12 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/docs/user/hyperion/configuration.rst +3 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/pyproject.toml +7 -16
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/_version.py +3 -3
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/experiment_plans/robot_load_plan.py +198 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/parameters/constants.py +17 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/parameters/robot_load_parameters.py +13 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/pin_tip_centring.py +31 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/robot_load.py +80 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i04/__init__.py +6 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i04/callbacks/murko_callback.py +27 -12
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i04/experiment_plans/i04_grid_detect_then_xray_centre_plan.py +87 -13
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/i04/external_interaction/config_server.py +15 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/i04/oav_centering_plans/oav_imaging.py +115 -0
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/i04/parameters/constants.py +21 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i04/redis_to_murko_forwarder.py +24 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i04/thawing_plan.py +147 -152
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/dcid.py +4 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/extruder/i24ssx_extruder_collect_py3v2.py +5 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/CustomChip_py3v1.edl +11 -11
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/DetStage.edl +3 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/DiamondChipI24-py3v1.edl +142 -142
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/MappingLite-oxford_py3v1.edl +135 -135
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/PMAC_Command.edl +8 -8
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/FT-gui-edm/pumpprobe-py3v1.edl +13 -13
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_chip_collect_py3v1.py +7 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_chip_manager_py3v1.py +35 -32
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/parameters/utils.py +5 -5
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/i24/serial/setup_beamline/pv.py +180 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/setup_beamline/setup_beamline.py +8 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/setup_beamline/setup_detector.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/beamlines/i24/serial/web_gui_plans/general_plans.py +1 -1
- mx_bluesky-1.5.12/src/mx_bluesky/beamlines/i24/serial/web_gui_plans/oav_plans.py +64 -0
- mx_bluesky-1.5.11/src/mx_bluesky/hyperion/device_setup_plans/smargon.py → mx_bluesky-1.5.12/src/mx_bluesky/common/device_setup_plans/gonio.py +9 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/device_setup_plans/manipulate_sample.py +8 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/device_setup_plans/robot_load_unload.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/device_setup_plans/setup_oav.py +8 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/device_setup_plans/setup_zebra_and_shutter.py +0 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/device_setup_plans/xbpm_feedback.py +8 -1
- mx_bluesky-1.5.12/src/mx_bluesky/common/experiment_plans/beamstop_check.py +229 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/experiment_plans/common_flyscan_xray_centre_plan.py +2 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/experiment_plans/inner_plans/read_hardware.py +5 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/experiment_plans/oav_snapshot_plan.py +0 -1
- {mx_bluesky-1.5.11/src/mx_bluesky/hyperion → mx_bluesky-1.5.12/src/mx_bluesky/common}/experiment_plans/pin_tip_centring_plan.py +20 -21
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/callbacks/common/grid_detection_callback.py +5 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/callbacks/common/ispyb_callback_base.py +10 -12
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/callbacks/common/ispyb_mapping.py +3 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/callbacks/xray_centre/ispyb_callback.py +5 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/config_server.py +2 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/ispyb/data_model.py +11 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/external_interaction/ispyb/exp_eye_store.py +159 -2
- mx_bluesky-1.5.12/src/mx_bluesky/common/external_interaction/ispyb/ispyb_store.py +214 -0
- mx_bluesky-1.5.12/src/mx_bluesky/common/external_interaction/ispyb/ispyb_utils.py +13 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/parameters/components.py +1 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/parameters/constants.py +3 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/parameters/device_composites.py +4 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/utils/exceptions.py +15 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/common/utils/log.py +9 -0
- mx_bluesky-1.5.12/src/mx_bluesky/common/utils/utils.py +90 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/__main__.py +3 -13
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/baton_handler.py +23 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/experiment_plans/pin_centre_then_xray_centre_plan.py +5 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/experiment_plans/robot_load_and_change_energy.py +3 -10
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/experiment_plans/robot_load_then_centre_plan.py +4 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/experiment_plans/rotation_scan_plan.py +8 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/experiment_plans/set_energy_plan.py +2 -2
- mx_bluesky-1.5.12/src/mx_bluesky/hyperion/experiment_plans/udc_default_state.py +160 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/external_interaction/agamemnon.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_callback.py +2 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_mapping.py +1 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/nexus_callback.py +1 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/external_interaction/config_server.py +5 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/parameters/constants.py +10 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/parameters/device_composites.py +2 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky/hyperion/parameters/robot_load.py +1 -9
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky.egg-info/PKG-INFO +6 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky.egg-info/SOURCES.txt +28 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/src/mx_bluesky.egg-info/requires.txt +5 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/conftest.py +121 -199
- mx_bluesky-1.5.12/tests/expeye_helpers.py +151 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/common/device_setup_plans/test_robot_load_unload.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/conftest.py +22 -11
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/callbacks/test_external_callbacks.py +1 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/conftest.py +11 -12
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/test_baton_handler_soak.py +16 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/test_ispyb_dev_connection.py +3 -5
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/test_load_centre_collect_full_plan.py +11 -31
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/external_interaction/test_nexgen.py +2 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/system_tests/hyperion/test_main_udc.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/test_data/test_domain_properties +5 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/test_data/test_domain_properties_with_no_gpu +4 -0
- mx_bluesky-1.5.12/tests/unit_tests/beamlines/aithre_lasershaping/test_aithre_pin_tip_centre.py +41 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/aithre_lasershaping/test_beamline_safe.py +2 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/aithre_lasershaping/test_check_goniometer_performance.py +1 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/aithre_lasershaping/test_goniometer_controls.py +2 -10
- mx_bluesky-1.5.12/tests/unit_tests/beamlines/aithre_lasershaping/test_robot_load.py +282 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i04/callbacks/test_murko_callback.py +107 -37
- mx_bluesky-1.5.12/tests/unit_tests/beamlines/i04/conftest.py +12 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i04/test_i04_grid_detect_then_xray_centre_plan.py +137 -18
- mx_bluesky-1.5.12/tests/unit_tests/beamlines/i04/test_oav_imaging.py +253 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i04/test_redis_to_murko_forwarder.py +26 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i04/test_thawing.py +156 -65
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i23/test_serial.py +3 -8
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/jungfrau_commissioning/plan_stubs/test_do_external_acquisition.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/jungfrau_commissioning/plan_stubs/test_do_internal_acquisition.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/jungfrau_commissioning/plan_stubs/test_plan_utils.py +0 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/conftest.py +7 -23
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/extruder/test_extruder_collect.py +8 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/fixed_target/test_chip_manager.py +23 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/fixed_target/test_ft_collect.py +16 -4
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/fixed_target/test_moveonclick.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/setup_beamline/test_setup_beamline.py +14 -9
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/setup_beamline/test_setup_detector.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/beamlines/i24/serial/test_dcid.py +1 -1
- mx_bluesky-1.5.12/tests/unit_tests/beamlines/i24/serial/web_gui/test_oav_plans.py +87 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/device_setup_plans/test_robot_load_unload.py +10 -3
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/device_setup_plans/test_xbpm_feedback.py +24 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/experiment_plans/inner_plans/test_do_fgs.py +1 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/experiment_plans/inner_plans/test_read_hardware.py +2 -3
- mx_bluesky-1.5.12/tests/unit_tests/common/experiment_plans/test_beamstop_check.py +439 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/experiment_plans/test_common_flyscan_xray_centre_plan.py +27 -6
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/experiment_plans/test_common_grid_detect_then_xray_centre_plan.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/experiment_plans/test_grid_detection_plan.py +10 -2
- {mx_bluesky-1.5.11/tests/unit_tests/hyperion → mx_bluesky-1.5.12/tests/unit_tests/common}/experiment_plans/test_pin_tip_centring.py +101 -78
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/callbacks/common/test_snapshot_callback.py +1 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/callbacks/ispyb/conftest.py +4 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/callbacks/ispyb/test_expeye_interaction.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/callbacks/ispyb/test_gridscan_ispyb_store_3d.py +240 -325
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/callbacks/ispyb/test_rotation_ispyb_store.py +137 -171
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/test_config_server.py +12 -9
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/external_interaction/xray_centre/test_ispyb_callback.py +177 -204
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/common/parameters/test_constants.py +6 -0
- mx_bluesky-1.5.12/tests/unit_tests/common/utils/test_utils.py +49 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/conftest.py +75 -27
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/device_setup_plans/test_dcm_pitch_roll_mirror_adjuster.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/device_setup_plans/test_manipulate_sample.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/device_setup_plans/test_utils.py +1 -1
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/experiment_plans/conftest.py +6 -2
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/experiment_plans/test_hyperion_flyscan_xray_centre_plan.py +1 -5
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- {mx_bluesky-1.5.11/tests/unit_tests/hyperion/utils → mx_bluesky-1.5.12/tests/unit_tests/hyperion/external_interaction/callbacks}/__init__.py +0 -0
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- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/external_interaction/nexus/test_write_nexus.py +0 -0
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- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/parameters/test_parameter_model.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/test_exceptions.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/test_plan_runner_api.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/test_runner.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/test_utils.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/utils/test_callback_sim.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/hyperion/utils/test_context.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/t01.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/tests/unit_tests/test_cli.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/build_docker_image.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/build_imginfo.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/deploy/create_venv.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/deploy/deploy_edm_for_ssx.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/deploy/test_deploy.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/dev_jaeger_container.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/dls_dev_env.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/docker/entrypoint.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/docker/healthcheck.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/docker/i03-compose.yml +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/generate_plantuml.py +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/graylog/Dockerfile +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/graylog/tcp_input.json +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/procserv_ioc_start.sh +0 -0
- {mx_bluesky-1.5.11 → mx_bluesky-1.5.12}/utility_scripts/request_baton.sh +0 -0
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Rotation scans are generalised so that multiple scans can be done at once. The plan will create one hdf file for all rotations but then N nexus files, N ispyb depositions and triggers zocalo N times.
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For multi rotations this is does by starting 1+2*N different runs:
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1. ``CONST.PLAN.ROTATION_MULTI``: This is emitted once for the whole multiple rotation. It is used by the nexus callback to get the full number of images and meta_data_run_number so that it knows which hdf file to use. When this is finished zocalo end is triggered.
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2. ``CONST.PLAN.ROTATION_OUTER``: Emitted N times, inside a ``CONST.PLAN.ROTATION_MULTI`` run. This is used to create the initial ispyb deposition and create the nexus writer (but not actually write the file)
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1. Create a new branch from main named pre followed by the release version e.g. pre_0.1.0. The release versions should look like ``{major}.{minor}.{patch}``.
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2. On this branch pin the latest release of dodal, and nexgen if necessary, then push to GitHub. (e.g "dls-dodal == 1.63.0")
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8. Publish the release
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NOTE FOR USING THE MX-BLUESKY-BLUEAPI IMAGE: If using this image with BlueAPI's helmchart for deployment, the version of dodal which is installed will be the version which is pinned in the BlueAPI, rather than what's in mx-bluesky's pyproject.toml. Before releasing, you should pin BlueAPI to a version which uses a dodal version which is compatible with itself AND mx-bluesky. The deployment will fail if BlueAPI has no version which works with the desired dodal version
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Follow these :ref:`instructions <deploying-to-i04-blueapi>` on how to deploy to I04 BlueAPI.
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------------------------
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Deciding release numbers
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The ``utility_scripts/deploy/deploy_mx_bluesky.py`` script will deploy the latest mx-bluesky version to a specified beamline. Deployments live in ``/dls_sw/ixx/software/bluesky/mx-
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The ``utility_scripts/deploy/deploy_mx_bluesky.py`` script will deploy the latest mx-bluesky version to a specified beamline. Deployments live in ``/dls_sw/ixx/software/bluesky/mx-bluesky_X.X.X``. To do a new deployment you should run the deploy script from your mx-bluesky dev environment with e.g.
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If you have just created a new release, you may need to run git fetch --tags to get the newest release.
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.. code:: console
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.. _deploying-to-i04-blueapi:
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Deploying to I04 BlueAPI
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------------------------
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To deploy to I04 BlueAPI, update the Chart.yaml and values.yaml in the i04-services repository to match the release version. It's a good idea to bump BlueAPI to the latest version too.
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Look at this `example <https://gitlab.diamond.ac.uk/controls/containers/beamline/i04-services/-/commit/f0ea7432ae996834001bbe50a07ba86d23534749>`_ as a guide. Note that mx-bluesky has recently dropped the ``v`` from it's version numbers.
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Once this change has been merged into main and the CI has completed successfully, press synchronise on the I04 ArgoCD page. This will update the version deployed in Kubernetes.
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"gda.mx.hyperion.xrc.use_gpu_results", "boolean", "If true, then zocalo gridscan processing uses the GPU results"
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"gda.mx.hyperion.xrc.use_roi_mode", "boolean", "If true then ROI mode is used."
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"gda.mx.hyperion.enable_beamstop_diode_check", "boolean", "If true, enables an extended beamstop position check
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during UDC default state script measuring the diode current out-of and in beam. Otherwise the beamstop position is
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moved to the data collection position."
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Beamline configuration/calibration files
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========================================
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"flask-restful",
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"ispyb",
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"jupyterlab",
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"matplotlib",
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"numpy
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"opencv-python", # Needed for I24 ssx moveonclick. To be changed to headless once this is moved to separate ui.
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"daq-config-server>=v1.0.0-rc.2",
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"blueapi >= 1.6.3",
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"ophyd >= 1.10.5",
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"ophyd-async >= 0.
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"ophyd-async >= 0.14.0",
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"bluesky >= 1.14.6",
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"dls-dodal == 1.
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"dls-dodal == 1.66.0",
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]
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@@ -67,6 +66,7 @@ dev = [
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"GitPython",
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"import-linter",
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"ipython",
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"mypy",
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"myst-parser",
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@@ -75,12 +75,13 @@ dev = [
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"pre-commit",
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"pydata-sphinx-theme>=0.12",
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# Pin to previous pyright until https://github.com/microsoft/pyright/issues/11060 is fixed
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"pyright==1.1.406",
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"pyright==1.1.406",
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"pytest-asyncio",
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"responses",
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"ruff",
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@@ -112,7 +113,6 @@ version_file = "src/mx_bluesky/_version.py"
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[tool.pyright]
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typeCheckingMode = "strict"
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# Issue to remove some of these exceptions: https://github.com/DiamondLightSource/mx-bluesky/issues/1403
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reportMissingTypeStubs = false
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reportUnknownMemberType = false
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reportUnknownLambdaType = false
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@@ -123,12 +123,8 @@ reportMissingTypeArgument = false
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reportPrivateUsage = false
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reportUnknownVariableType = false
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reportUnusedVariable = false
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reportUnusedFunction = false
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reportUnnecessaryComparison = false
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reportUnnecessaryCast = false
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reportUnnecessaryIsInstance = false
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[tool.pytest.ini_options]
|
|
@@ -155,13 +151,8 @@ filterwarnings = [
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"ignore:(.*)unclosed file(.*)name='(.*)dodal.log'(.*):ResourceWarning",
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"ignore:(.*)unclosed <socket(.*):ResourceWarning",
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"ignore:(.*)unclosed event loop(.*):ResourceWarning",
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# Ignore deprecation warning from python-workflows https://github.com/DiamondLightSource/python-workflows/issues/180
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"ignore:.*pkg_resources.*:DeprecationWarning",
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# Ignore warning about deprecated throw() call https://github.com/bluesky/bluesky/issues/1817
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"ignore:.*signature of throw\\(\\) is deprecated.*:DeprecationWarning",
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|
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# Ignore warning about deprecations in python-workflows encountered during system tests
|
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-
# https://github.com/DiamondLightSource/python-workflows/issues/188
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|
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"ignore:.*`Field` should not be instantiated.*:marshmallow.warnings.ChangedInMarshmallow4Warning",
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|
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#Remove when we drop python 3.11
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"ignore:.*__contains__ will no longer raise TypeError.*:DeprecationWarning",
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# epicscorelibs requires setuptools >= 70.1
|
|
@@ -221,7 +212,7 @@ setenv =
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ISPYB_CONFIG_PATH={toxinidir}/tests/test_data/ispyb-test-credentials.cfg
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ZOCALO_CONFIG={toxinidir}/tests/test_data/zocalo-test-configuration.yaml
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|
commands =
|
|
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|
-
pytest -m system_test --timeout=60 tests/system_tests
|
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|
+
pytest -m system_test --timeout=60 tests/system_tests {posargs}
|
|
225
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|
"""
|
|
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217
|
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[tool.ruff]
|
|
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
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commit_id: COMMIT_ID
|
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|
__commit_id__: COMMIT_ID
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__version__ = version = '1.5.
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-
__version_tuple__ = version_tuple = (1, 5,
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+
__version__ = version = '1.5.12'
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+
__version_tuple__ = version_tuple = (1, 5, 12)
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__commit_id__ = commit_id = '
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__commit_id__ = commit_id = 'ge66bd29e0'
|
mx_bluesky-1.5.12/src/mx_bluesky/beamlines/aithre_lasershaping/experiment_plans/robot_load_plan.py
ADDED
|
@@ -0,0 +1,198 @@
|
|
|
1
|
+
from __future__ import annotations
|
|
2
|
+
|
|
3
|
+
from datetime import datetime
|
|
4
|
+
from pathlib import Path
|
|
5
|
+
|
|
6
|
+
import bluesky.plan_stubs as bps
|
|
7
|
+
import bluesky.preprocessors as bpp
|
|
8
|
+
import pydantic
|
|
9
|
+
from dodal.devices.motors import XYZOmegaStage, XYZStage
|
|
10
|
+
from dodal.devices.oav.oav_detector import OAV
|
|
11
|
+
from dodal.devices.oav.pin_image_recognition import PinTipDetection
|
|
12
|
+
from dodal.devices.robot import BartRobot, SampleLocation
|
|
13
|
+
|
|
14
|
+
from mx_bluesky.beamlines.aithre_lasershaping.parameters.constants import CONST
|
|
15
|
+
from mx_bluesky.beamlines.aithre_lasershaping.parameters.robot_load_parameters import (
|
|
16
|
+
AithreRobotLoad,
|
|
17
|
+
)
|
|
18
|
+
from mx_bluesky.common.device_setup_plans.robot_load_unload import (
|
|
19
|
+
do_plan_while_lower_gonio_at_home,
|
|
20
|
+
)
|
|
21
|
+
from mx_bluesky.common.experiment_plans.pin_tip_centring_plan import (
|
|
22
|
+
PinTipCentringComposite,
|
|
23
|
+
pin_tip_centre_plan,
|
|
24
|
+
)
|
|
25
|
+
from mx_bluesky.common.parameters.constants import (
|
|
26
|
+
DocDescriptorNames,
|
|
27
|
+
PlanNameConstants,
|
|
28
|
+
)
|
|
29
|
+
|
|
30
|
+
|
|
31
|
+
@pydantic.dataclasses.dataclass(config={"arbitrary_types_allowed": True})
|
|
32
|
+
class RobotLoadComposite:
|
|
33
|
+
# RobotLoad fields
|
|
34
|
+
robot: BartRobot
|
|
35
|
+
lower_gonio: XYZStage
|
|
36
|
+
oav: OAV
|
|
37
|
+
gonio: XYZOmegaStage
|
|
38
|
+
|
|
39
|
+
|
|
40
|
+
def _move_gonio_to_home_position(
|
|
41
|
+
composite: RobotLoadComposite,
|
|
42
|
+
x_home: float = 0.0,
|
|
43
|
+
y_home: float = 0.0,
|
|
44
|
+
z_home: float = 0.0,
|
|
45
|
+
omega_home: float = 0.0,
|
|
46
|
+
group: str = "group",
|
|
47
|
+
):
|
|
48
|
+
"""
|
|
49
|
+
Move Gonio to home position, default is zero
|
|
50
|
+
"""
|
|
51
|
+
yield from bps.abs_set(composite.gonio.omega, omega_home, group=group)
|
|
52
|
+
yield from bps.abs_set(composite.gonio.x, x_home, group=group)
|
|
53
|
+
yield from bps.abs_set(composite.gonio.y, y_home, group=group)
|
|
54
|
+
yield from bps.abs_set(composite.gonio.z, z_home, group=group)
|
|
55
|
+
|
|
56
|
+
yield from bps.wait(group=group)
|
|
57
|
+
|
|
58
|
+
|
|
59
|
+
def _take_robot_snapshots(oav: OAV, directory: Path):
|
|
60
|
+
time_now = datetime.now()
|
|
61
|
+
snapshot_format = f"{time_now.strftime('%H%M%S')}_{{device}}_after_load"
|
|
62
|
+
for device in [oav.snapshot]:
|
|
63
|
+
yield from bps.abs_set(
|
|
64
|
+
device.filename, snapshot_format.format(device=device.name)
|
|
65
|
+
)
|
|
66
|
+
yield from bps.abs_set(device.directory, str(directory))
|
|
67
|
+
# Note: should be able to use `wait=True` after https://github.com/bluesky/bluesky/issues/1795
|
|
68
|
+
yield from bps.trigger(device, group="snapshots")
|
|
69
|
+
yield from bps.wait("snapshots")
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
def _do_robot_load_and_centre(
|
|
73
|
+
composite: RobotLoadComposite,
|
|
74
|
+
sample_location: SampleLocation,
|
|
75
|
+
sample_id: int,
|
|
76
|
+
pin_tip_detection: PinTipDetection,
|
|
77
|
+
tip_offset_microns: float = 0,
|
|
78
|
+
oav_config_file: str = CONST.OAV_CENTRING_FILE,
|
|
79
|
+
):
|
|
80
|
+
yield from bps.abs_set(composite.robot.next_sample_id, sample_id, wait=True)
|
|
81
|
+
yield from bps.abs_set(
|
|
82
|
+
composite.robot,
|
|
83
|
+
sample_location,
|
|
84
|
+
group="robot_load",
|
|
85
|
+
)
|
|
86
|
+
|
|
87
|
+
yield from _move_gonio_to_home_position(composite=composite, group="robot_load")
|
|
88
|
+
|
|
89
|
+
yield from bps.wait(group="robot_load")
|
|
90
|
+
|
|
91
|
+
pin_tip_centring_composite = PinTipCentringComposite(
|
|
92
|
+
composite.oav, composite.gonio, pin_tip_detection
|
|
93
|
+
)
|
|
94
|
+
yield from pin_tip_centre_plan(
|
|
95
|
+
pin_tip_centring_composite, tip_offset_microns, oav_config_file
|
|
96
|
+
)
|
|
97
|
+
|
|
98
|
+
|
|
99
|
+
def _robot_load_and_snapshots(
|
|
100
|
+
composite: RobotLoadComposite,
|
|
101
|
+
location: SampleLocation,
|
|
102
|
+
snapshot_directory: Path,
|
|
103
|
+
sample_id: int,
|
|
104
|
+
pin_tip_detection: PinTipDetection,
|
|
105
|
+
tip_offset_microns: float = 0,
|
|
106
|
+
oav_config_file: str = CONST.OAV_CENTRING_FILE,
|
|
107
|
+
):
|
|
108
|
+
yield from bps.create(name=DocDescriptorNames.ROBOT_PRE_LOAD)
|
|
109
|
+
yield from bps.read(composite.robot)
|
|
110
|
+
yield from bps.save()
|
|
111
|
+
|
|
112
|
+
robot_load_plan = _do_robot_load_and_centre(
|
|
113
|
+
composite,
|
|
114
|
+
location,
|
|
115
|
+
sample_id,
|
|
116
|
+
pin_tip_detection,
|
|
117
|
+
tip_offset_microns,
|
|
118
|
+
oav_config_file,
|
|
119
|
+
)
|
|
120
|
+
|
|
121
|
+
gonio_finished = yield from do_plan_while_lower_gonio_at_home(
|
|
122
|
+
robot_load_plan, composite.lower_gonio
|
|
123
|
+
)
|
|
124
|
+
yield from bps.wait(group="snapshot")
|
|
125
|
+
|
|
126
|
+
yield from _take_robot_snapshots(composite.oav, snapshot_directory)
|
|
127
|
+
|
|
128
|
+
yield from bps.create(name=DocDescriptorNames.ROBOT_UPDATE)
|
|
129
|
+
yield from bps.read(composite.robot)
|
|
130
|
+
yield from bps.read(composite.oav.snapshot)
|
|
131
|
+
yield from bps.save()
|
|
132
|
+
|
|
133
|
+
yield from bps.wait(gonio_finished)
|
|
134
|
+
|
|
135
|
+
|
|
136
|
+
def robot_load_and_snapshots_plan(
|
|
137
|
+
composite: RobotLoadComposite,
|
|
138
|
+
params: AithreRobotLoad,
|
|
139
|
+
ptd: PinTipDetection,
|
|
140
|
+
tip_offset_microns: float = 0,
|
|
141
|
+
oav_config_file: str = CONST.OAV_CENTRING_FILE,
|
|
142
|
+
):
|
|
143
|
+
assert params.sample_puck is not None
|
|
144
|
+
assert params.sample_pin is not None
|
|
145
|
+
|
|
146
|
+
sample_location = SampleLocation(params.sample_puck, params.sample_pin)
|
|
147
|
+
|
|
148
|
+
yield from _move_gonio_to_home_position(composite)
|
|
149
|
+
|
|
150
|
+
yield from bpp.set_run_key_wrapper(
|
|
151
|
+
bpp.run_wrapper(
|
|
152
|
+
_robot_load_and_snapshots(
|
|
153
|
+
composite,
|
|
154
|
+
sample_location,
|
|
155
|
+
params.snapshot_directory,
|
|
156
|
+
params.sample_id,
|
|
157
|
+
ptd,
|
|
158
|
+
tip_offset_microns,
|
|
159
|
+
oav_config_file,
|
|
160
|
+
),
|
|
161
|
+
md={
|
|
162
|
+
"subplan_name": PlanNameConstants.ROBOT_LOAD,
|
|
163
|
+
"metadata": {"visit": params.visit, "sample_id": params.sample_id},
|
|
164
|
+
"activate_callbacks": [
|
|
165
|
+
"RobotLoadISPyBCallback",
|
|
166
|
+
],
|
|
167
|
+
},
|
|
168
|
+
),
|
|
169
|
+
PlanNameConstants.ROBOT_LOAD_AND_SNAPSHOTS,
|
|
170
|
+
)
|
|
171
|
+
|
|
172
|
+
|
|
173
|
+
def robot_unload_plan(
|
|
174
|
+
composite: RobotLoadComposite,
|
|
175
|
+
params: AithreRobotLoad,
|
|
176
|
+
):
|
|
177
|
+
@bpp.run_decorator(
|
|
178
|
+
md={
|
|
179
|
+
"subplan_name": PlanNameConstants.ROBOT_UNLOAD,
|
|
180
|
+
"metadata": {"visit": params.visit, "sample_id": params.sample_id},
|
|
181
|
+
"activate_callbacks": [
|
|
182
|
+
"RobotLoadISPyBCallback",
|
|
183
|
+
],
|
|
184
|
+
},
|
|
185
|
+
)
|
|
186
|
+
def do_robot_unload_and_send_to_ispyb():
|
|
187
|
+
yield from _take_robot_snapshots(composite.oav, params.snapshot_directory)
|
|
188
|
+
yield from bps.wait(group="snapshot")
|
|
189
|
+
yield from _move_gonio_to_home_position(composite)
|
|
190
|
+
|
|
191
|
+
yield from bps.abs_set(composite.robot, None, wait=True)
|
|
192
|
+
|
|
193
|
+
yield from bps.create(name=DocDescriptorNames.ROBOT_UPDATE)
|
|
194
|
+
yield from bps.read(composite.robot)
|
|
195
|
+
yield from bps.read(composite.oav.snapshot)
|
|
196
|
+
yield from bps.save()
|
|
197
|
+
|
|
198
|
+
yield from do_robot_unload_and_send_to_ispyb()
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
import os
|
|
2
|
+
|
|
3
|
+
from pydantic.dataclasses import dataclass
|
|
4
|
+
|
|
5
|
+
TEST_MODE = os.environ.get("AITHRE_TEST_MODE")
|
|
6
|
+
|
|
7
|
+
|
|
8
|
+
@dataclass(frozen=True)
|
|
9
|
+
class AithreConstants:
|
|
10
|
+
BEAMLINE = "aithre"
|
|
11
|
+
OAV_CENTRING_FILE = (
|
|
12
|
+
"/dls/science/groups/i23/aithre/daq_configuration/json/OAVCentring_aithre.json"
|
|
13
|
+
)
|
|
14
|
+
LOG_FILE_NAME = "aithre.log"
|
|
15
|
+
|
|
16
|
+
|
|
17
|
+
CONST = AithreConstants()
|