mx-bluesky 1.4.2__tar.gz → 1.4.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/.gitignore +3 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/PKG-INFO +6 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/docs/conf.py +2 -0
- mx_bluesky-1.4.4/docs/developer/hyperion/reference/gridscan.puml +109 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/docs/developer/hyperion/reference/param-hierarchy.rst +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/pyproject.toml +8 -5
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/_version.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/dcid.py +3 -3
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/extruder/i24ssx_Extruder_Collect_py3v2.py +24 -9
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_Chip_Collect_py3v1.py +13 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_Chip_Manager_py3v1.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/parameters/__init__.py +2 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/parameters/constants.py +13 -5
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/parameters/experiment_parameters.py +20 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/setup_beamline/setup_beamline.py +40 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/setup_beamline/setup_zebra_plans.py +81 -40
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/callbacks/common}/aperture_change_callback.py +1 -1
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/callbacks/common}/grid_detection_callback.py +19 -1
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/callbacks/common}/ispyb_callback_base.py +40 -34
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/callbacks/common/ispyb_mapping.py +4 -4
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/callbacks/common}/logging_callback.py +1 -1
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/callbacks/common}/zocalo_callback.py +13 -19
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/callbacks/xray_centre/ispyb_callback.py +39 -34
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/callbacks/xray_centre/ispyb_mapping.py +2 -2
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/callbacks/xray_centre/nexus_callback.py +20 -15
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/common/external_interaction/config_server.py +11 -0
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/ispyb/data_model.py +2 -0
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/ispyb/exp_eye_store.py +5 -5
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/ispyb/ispyb_store.py +20 -18
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/ispyb/ispyb_utils.py +2 -2
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/nexus/nexus_utils.py +21 -6
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/external_interaction/nexus/write_nexus.py +5 -5
- mx_bluesky-1.4.4/src/mx_bluesky/common/external_interaction/test_config_server.py +38 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/common/parameters/components.py +9 -8
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/common/parameters/constants.py +1 -0
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common}/parameters/gridscan.py +44 -78
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/common/plans/do_fgs.py +4 -10
- {mx_bluesky-1.4.2/src/mx_bluesky/hyperion → mx_bluesky-1.4.4/src/mx_bluesky/common/utils}/exceptions.py +15 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/common/utils/log.py +17 -7
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/__main__.py +15 -14
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/device_setup_plans/check_beamstop.py +27 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/dcm_pitch_roll_mirror_adjuster.py +13 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/manipulate_sample.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/position_detector.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/read_hardware_for_setup.py +3 -3
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/setup_panda.py +21 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/setup_zebra.py +62 -36
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/smargon.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/utils.py +4 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/device_setup_plans/xbpm_feedback.py +8 -8
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/change_aperture_then_move_plan.py +28 -17
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/common/xrc_result.py +10 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/experiment_registry.py +9 -9
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/flyscan_xray_centre_plan.py +39 -49
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/grid_detect_then_xray_centre_plan.py +22 -23
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/load_centre_collect_full_plan.py +4 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/oav_grid_detection_plan.py +3 -3
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/optimise_attenuation_plan.py +6 -14
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/pin_centre_then_xray_centre_plan.py +12 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/pin_tip_centring_plan.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/robot_load_and_change_energy.py +9 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/robot_load_then_centre_plan.py +10 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/rotation_scan_plan.py +33 -17
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/experiment_plans/set_energy_plan.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/external_interaction/callbacks/__main__.py +32 -23
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/external_interaction/callbacks/common/callback_util.py +95 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/external_interaction/callbacks/robot_load/ispyb_callback.py +22 -15
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_callback.py +25 -24
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_mapping.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/external_interaction/callbacks/rotation/nexus_callback.py +13 -9
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/external_interaction/callbacks/sample_handling/sample_handling_callback.py +50 -0
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/external_interaction/config_server.py +32 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/parameters/components.py +3 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/parameters/constants.py +1 -0
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/parameters/gridscan.py +147 -0
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/parameters/load_centre_collect.py +100 -0
- mx_bluesky-1.4.4/src/mx_bluesky/hyperion/parameters/robot_load.py +40 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/parameters/rotation.py +28 -3
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/utils/context.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/hyperion/utils/validation.py +4 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky.egg-info/PKG-INFO +6 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky.egg-info/SOURCES.txt +53 -44
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky.egg-info/requires.txt +4 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/conftest.py +534 -34
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/conftest.py +4 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/experiment_plans/test_fgs_plan.py +27 -39
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/experiment_plans/test_plan_system.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/callbacks/test_external_callbacks.py +5 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/conftest.py +15 -14
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/test_exp_eye_dev.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/test_ispyb_dev_connection.py +41 -34
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/test_load_centre_collect_full_plan.py +53 -15
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/test_nexgen.py +11 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/external_interaction/test_zocalo_system.py +6 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/test_aperturescatterguard_system.py +14 -4
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/system_tests/hyperion/test_device_setups_and_cleanups.py +28 -12
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/example_load_centre_collect_params.json +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/good_test_grid_with_edge_detect_parameters.json +2 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/good_test_load_centre_collect_params.json +5 -5
- mx_bluesky-1.4.4/tests/test_data/parameter_json_files/good_test_load_centre_collect_params_multi_rotation.json +51 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/good_test_multi_rotation_scan_parameters.json +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/good_test_pin_centre_then_xray_centre_parameters.json +2 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/test_data/parameter_json_files/good_test_robot_load_and_centre_params.json +2 -1
- mx_bluesky-1.4.4/tests/test_data/test_daq_configuration/lookup/BeamLine_Undulator_toGap.txt +60 -0
- mx_bluesky-1.4.4/tests/test_data/test_daq_configuration/lookup/test_det_dist_converter.txt +7 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/conftest.py +13 -3
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/extruder/test_extruder_collect.py +53 -47
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/fixed_target/conftest.py +10 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/fixed_target/test_chip_manager.py +8 -8
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/fixed_target/test_ft_collect.py +26 -25
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/parameters/test_parameter_model.py +1 -1
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/setup_beamline/test_setup_beamline.py +37 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/setup_beamline/test_setup_detector.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/setup_beamline/test_zebra_plans.py +26 -24
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/beamlines/i24/serial/test_dcid.py +4 -1
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion → mx_bluesky-1.4.4/tests/unit_tests/common}/external_interaction/callbacks/common/test_abstract_event.py +1 -1
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/callbacks}/ispyb/conftest.py +6 -6
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/callbacks}/ispyb/test_expeye_interaction.py +12 -12
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/callbacks}/ispyb/test_gridscan_ispyb_store_3d.py +17 -18
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/callbacks}/ispyb/test_rotation_ispyb_store.py +11 -11
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion → mx_bluesky-1.4.4/tests/unit_tests/common}/external_interaction/callbacks/test_plan_reactive_callback.py +5 -2
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion → mx_bluesky-1.4.4/tests/unit_tests/common}/external_interaction/callbacks/test_zocalo_handler.py +12 -19
- mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/conftest.py +52 -0
- mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction/nexus/test_nexus_utils.py +45 -0
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion → mx_bluesky-1.4.4/tests/unit_tests/common}/external_interaction/test_ispyb_utils.py +2 -2
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction}/xray_centre/test_ispyb_callback.py +31 -16
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction}/xray_centre/test_ispyb_handler.py +34 -17
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction}/xray_centre/test_ispyb_mapping.py +25 -28
- {mx_bluesky-1.4.2/tests/unit_tests/hyperion/external_interaction/callbacks → mx_bluesky-1.4.4/tests/unit_tests/common/external_interaction}/xray_centre/test_nexus_handler.py +22 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/common/plan_stubs/test_do_fgs.py +0 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/common/utils/test_log.py +21 -19
- mx_bluesky-1.4.4/tests/unit_tests/hyperion/conftest.py +23 -0
- mx_bluesky-1.4.4/tests/unit_tests/hyperion/device_setup_plans/test_check_beamstop.py +24 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/device_setup_plans/test_manipulate_sample.py +11 -11
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/device_setup_plans/test_setup_panda.py +15 -10
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/device_setup_plans/test_utils.py +6 -6
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/device_setup_plans/test_zebra_setup.py +38 -30
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/experiment_plans/conftest.py +57 -32
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/experiment_plans/test_change_aperture_then_move_plan.py +2 -2
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/tests/unit_tests/hyperion/experiment_plans/test_flyscan_xray_centre_plan.py +91 -88
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- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/deploy/deploy_hyperion_to_k8s.sh +0 -0
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- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/docker/healthcheck.sh +0 -0
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- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/graylog/Dockerfile +0 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/graylog/tcp_input.json +0 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/procserv_ioc_start.sh +0 -0
- {mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/utility_scripts/run_imginfo.sh +0 -0
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Summary: Bluesky tools for MX Beamlines at DLS
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@startuml
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title Gridscan Parameter Relationships
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class DiffractionExperiment
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class DiffractionExperimentWithSample
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class GridCommon {
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grid_width_um
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exposure_time_s
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}
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class GridScanWithEdgeDetect {
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box_size_um
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}
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class HyperionGridCommon {
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enable_dev_shm
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}
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class HyperionThreeDGridScan {
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x_step_size_um
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y_step_size_um
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z_step_size_um
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y2_start_um
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z2_start_um
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--
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grid_1_spec
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grid_2_spec
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scan_indices
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scan_spec
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scan_points
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scan_points_first_grid
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scan_points_second_grid
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num_images
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FGS_Params
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panda_FGS_Params
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}
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class MxBlueSkyParameters
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class SpecifiedGrid
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class XyzStarts {
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x_start_um
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y_start_um
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z_start_um
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}
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class OptionalXYZStarts {
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x_start_um
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y_start_um
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z_start_um
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}
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class RotationScanPerSweep
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MxBlueSkyParameters <|-- DiffractionExperiment
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DiffractionExperiment <|-- DiffractionExperimentWithSample
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DiffractionExperimentWithSample <|-- GridCommon
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GridCommon <|-- GridScanWithEdgeDetect
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GridCommon <|-- HyperionGridCommon
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HyperionGridCommon <|-- HyperionThreeDGridScan
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SpecifiedGrid <|-- HyperionThreeDGridScan
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XyzStarts <|-- SpecifiedGrid
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OptionalXYZStarts <|-- RotationScanPerSweep
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class GridParamUpdate {
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x_start_um
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y_start_um
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y2_start_um
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z_start_um
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z2_start_um
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x_steps
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y_steps
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z_steps
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x_step_size_um
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y_step_size_um
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z_step_size_um
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}
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class GridDetectionCallback {
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get_grid_parameters() -> GridParamUpdate
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}
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GridDetectionCallback --> GridParamUpdate : generates from event. Adds 0.5 to get box-centres
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GridParamUpdate --> HyperionThreeDGridScan : combines with GridScanWithEdgeDetect
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class experiment_plans {
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grid_detect_then_xray_centre()
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flyscan_xray_centre_no_move()
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}
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class AbstractExperimentBase
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class AbstractExperimentWithBeamParams
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class GridScanParamsCommon {
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x_steps
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y_steps
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z_steps
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}
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class PandAGridScanParams
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class ZebraGridScanParams
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AbstractExperimentBase <|-- AbstractExperimentWithBeamParams
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AbstractExperimentWithBeamParams <|-- GridScanParamsCommon
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GridScanParamsCommon <|-- PandAGridScanParams
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GridScanParamsCommon <|-- ZebraGridScanParams
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HyperionThreeDGridScan --> ZebraGridScanParams : generates
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HyperionThreeDGridScan --> PandAGridScanParams : generates
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@enduml
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type-checking: pyright src tests {posargs}
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docs/developer/hyperion/reference/param_hierarchy.puml"
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[tool.ruff]
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parameters.detector_distance_mm,
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parameters.detector_size_constants,
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beam_center_pixels,
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caput(pv.eiger_seqID, int(caget(pv.eiger_seqID)) + 1)
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detector_stage, attenuator
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)
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# Create collection directory
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parameters.collection_directory.mkdir(parents=True, exist_ok=True)
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beam_center_device = sup.get_beam_center_device(parameters.detector_name)
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@@ -10,7 +10,7 @@ import bluesky.plan_stubs as bps
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import bluesky.preprocessors as bpp
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from bluesky.utils import MsgGenerator
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from dodal.common import inject
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from dodal.devices.attenuator import ReadOnlyAttenuator
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+
from dodal.devices.attenuator.attenuator import ReadOnlyAttenuator
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from dodal.devices.hutch_shutter import HutchShutter, ShutterDemand
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from dodal.devices.i24.aperture import Aperture
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from dodal.devices.i24.beam_center import DetectorBeamCenter
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@@ -20,7 +20,7 @@ from dodal.devices.i24.dual_backlight import DualBacklight
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from dodal.devices.i24.focus_mirrors import FocusMirrorsMode
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from dodal.devices.i24.i24_detector_motion import DetectorMotion
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from dodal.devices.i24.pmac import PMAC
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from dodal.devices.zebra import Zebra
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+
from dodal.devices.zebra.zebra import Zebra
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24
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from mx_bluesky.beamlines.i24.serial.dcid import (
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DCID,
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@@ -38,6 +38,7 @@ from mx_bluesky.beamlines.i24.serial.fixed_target.i24ssx_Chip_Manager_py3v1 impo
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38
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)
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from mx_bluesky.beamlines.i24.serial.log import SSX_LOGGER, log_on_entry
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from mx_bluesky.beamlines.i24.serial.parameters import FixedTargetParameters
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+
from mx_bluesky.beamlines.i24.serial.parameters.constants import BEAM_CENTER_LUT_FILES
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from mx_bluesky.beamlines.i24.serial.setup_beamline import caget, cagetstring, caput, pv
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from mx_bluesky.beamlines.i24.serial.setup_beamline import setup_beamline as sup
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from mx_bluesky.beamlines.i24.serial.setup_beamline.setup_zebra_plans import (
|
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@@ -410,7 +411,6 @@ def start_i24(
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Path(filepath).mkdir(parents=True, exist_ok=True)
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SSX_LOGGER.info(f"Triggered Eiger setup: filepath {filepath}")
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|
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@@ -547,8 +547,14 @@ def main_fixed_target_plan(
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547
547
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) -> MsgGenerator:
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SSX_LOGGER.info("Running a chip collection on I24")
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+
beam_center_pixels = sup.compute_beam_center_position_from_lut(
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BEAM_CENTER_LUT_FILES[parameters.detector_name],
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+
parameters.detector_distance_mm,
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+
parameters.detector_size_constants,
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+
)
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yield from sup.set_detector_beam_center_plan(
|
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beam_center_device,
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+
beam_center_device,
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+
beam_center_pixels,
|
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552
558
|
)
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553
559
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SSX_LOGGER.info("Getting Program Dictionary")
|
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@@ -697,6 +703,9 @@ def run_fixed_target_plan(
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697
703
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detector_stage, attenuator
|
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698
704
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)
|
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699
705
|
|
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706
|
+
# Create collection directory
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707
|
+
parameters.collection_directory.mkdir(parents=True, exist_ok=True)
|
|
708
|
+
|
|
700
709
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if parameters.chip_map:
|
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701
710
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upload_chip_map_to_geobrick(pmac, parameters.chip_map)
|
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702
711
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|
|
@@ -15,7 +15,7 @@ import bluesky.plan_stubs as bps
|
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15
15
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import numpy as np
|
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16
16
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from bluesky.utils import MsgGenerator
|
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17
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from dodal.common import inject
|
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18
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-
from dodal.devices.attenuator import ReadOnlyAttenuator
|
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18
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+
from dodal.devices.attenuator.attenuator import ReadOnlyAttenuator
|
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19
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from dodal.devices.i24.beamstop import Beamstop, BeamstopPositions
|
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from dodal.devices.i24.dual_backlight import BacklightPositions, DualBacklight
|
|
21
21
|
from dodal.devices.i24.i24_detector_motion import DetectorMotion
|
{mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/parameters/__init__.py
RENAMED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
from mx_bluesky.beamlines.i24.serial.parameters.constants import SSXType
|
|
1
|
+
from mx_bluesky.beamlines.i24.serial.parameters.constants import DetectorName, SSXType
|
|
2
2
|
from mx_bluesky.beamlines.i24.serial.parameters.experiment_parameters import (
|
|
3
3
|
BeamSettings,
|
|
4
4
|
ChipDescription,
|
|
@@ -13,6 +13,7 @@ from mx_bluesky.beamlines.i24.serial.parameters.utils import (
|
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13
13
|
|
|
14
14
|
__all__ = [
|
|
15
15
|
"SSXType",
|
|
16
|
+
"DetectorName",
|
|
16
17
|
"BeamSettings",
|
|
17
18
|
"ExtruderParameters",
|
|
18
19
|
"ChipDescription",
|
{mx_bluesky-1.4.2 → mx_bluesky-1.4.4}/src/mx_bluesky/beamlines/i24/serial/parameters/constants.py
RENAMED
|
@@ -1,18 +1,26 @@
|
|
|
1
|
-
from enum import
|
|
1
|
+
from enum import StrEnum
|
|
2
2
|
from os import environ
|
|
3
3
|
from pathlib import Path
|
|
4
4
|
|
|
5
5
|
from mx_bluesky.beamlines.i24.serial.log import _read_visit_directory_from_file
|
|
6
6
|
|
|
7
7
|
|
|
8
|
-
class SSXType(
|
|
8
|
+
class SSXType(StrEnum):
|
|
9
9
|
FIXED = "Serial Fixed"
|
|
10
10
|
EXTRUDER = "Serial Jet"
|
|
11
11
|
|
|
12
12
|
|
|
13
|
-
|
|
14
|
-
"eiger"
|
|
15
|
-
"pilatus"
|
|
13
|
+
class DetectorName(StrEnum):
|
|
14
|
+
EIGER = "eiger"
|
|
15
|
+
PILATUS = "pilatus"
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
# TODO figue sth out for tests
|
|
19
|
+
LUT_FILES_PATH = Path("/dls_sw/i24/software/daq_configuration/lookup")
|
|
20
|
+
|
|
21
|
+
BEAM_CENTER_LUT_FILES = {
|
|
22
|
+
DetectorName.EIGER: LUT_FILES_PATH / "DetDistToBeamXYConverterE9M.txt",
|
|
23
|
+
DetectorName.PILATUS: LUT_FILES_PATH / "DetDistToBeamXYConverterP6M.txt",
|
|
16
24
|
}
|
|
17
25
|
|
|
18
26
|
|
|
@@ -1,9 +1,13 @@
|
|
|
1
1
|
import json
|
|
2
2
|
from abc import abstractmethod
|
|
3
3
|
from pathlib import Path
|
|
4
|
-
from typing import Literal
|
|
5
4
|
|
|
6
5
|
import numpy as np
|
|
6
|
+
from dodal.devices.detector.det_dim_constants import (
|
|
7
|
+
EIGER2_X_9M_SIZE,
|
|
8
|
+
PILATUS_6M_SIZE,
|
|
9
|
+
DetectorSizeConstants,
|
|
10
|
+
)
|
|
7
11
|
from pydantic import BaseModel, ConfigDict, computed_field, field_validator
|
|
8
12
|
|
|
9
13
|
from mx_bluesky.beamlines.i24.serial.fixed_target.ft_utils import (
|
|
@@ -11,7 +15,10 @@ from mx_bluesky.beamlines.i24.serial.fixed_target.ft_utils import (
|
|
|
11
15
|
MappingType,
|
|
12
16
|
PumpProbeSetting,
|
|
13
17
|
)
|
|
14
|
-
from mx_bluesky.beamlines.i24.serial.parameters.constants import
|
|
18
|
+
from mx_bluesky.beamlines.i24.serial.parameters.constants import (
|
|
19
|
+
DetectorName,
|
|
20
|
+
SSXType,
|
|
21
|
+
)
|
|
15
22
|
|
|
16
23
|
|
|
17
24
|
class SerialExperiment(BaseModel):
|
|
@@ -22,7 +29,7 @@ class SerialExperiment(BaseModel):
|
|
|
22
29
|
filename: str
|
|
23
30
|
exposure_time_s: float
|
|
24
31
|
detector_distance_mm: float
|
|
25
|
-
detector_name:
|
|
32
|
+
detector_name: DetectorName
|
|
26
33
|
transmission: float
|
|
27
34
|
|
|
28
35
|
@field_validator("visit", mode="before")
|
|
@@ -34,7 +41,16 @@ class SerialExperiment(BaseModel):
|
|
|
34
41
|
|
|
35
42
|
@property
|
|
36
43
|
def collection_directory(self) -> Path:
|
|
37
|
-
|
|
44
|
+
directory = Path(self.visit) / self.directory
|
|
45
|
+
return directory
|
|
46
|
+
|
|
47
|
+
@property
|
|
48
|
+
def detector_size_constants(self) -> DetectorSizeConstants:
|
|
49
|
+
return (
|
|
50
|
+
EIGER2_X_9M_SIZE
|
|
51
|
+
if self.detector_name is DetectorName.EIGER
|
|
52
|
+
else PILATUS_6M_SIZE
|
|
53
|
+
)
|
|
38
54
|
|
|
39
55
|
|
|
40
56
|
class LaserExperiment(BaseModel):
|
|
@@ -1,15 +1,20 @@
|
|
|
1
|
+
from pathlib import Path
|
|
1
2
|
from time import sleep
|
|
2
3
|
|
|
3
4
|
import bluesky.plan_stubs as bps
|
|
4
5
|
from dodal.beamlines import i24
|
|
6
|
+
from dodal.devices.detector.det_dim_constants import DetectorSizeConstants
|
|
5
7
|
from dodal.devices.i24.aperture import Aperture, AperturePositions
|
|
6
8
|
from dodal.devices.i24.beam_center import DetectorBeamCenter
|
|
7
9
|
from dodal.devices.i24.beamstop import Beamstop, BeamstopPositions
|
|
8
10
|
from dodal.devices.i24.dual_backlight import BacklightPositions, DualBacklight
|
|
9
11
|
from dodal.devices.i24.i24_detector_motion import DetectorMotion
|
|
12
|
+
from dodal.devices.util.lookup_tables import (
|
|
13
|
+
linear_interpolation_lut,
|
|
14
|
+
parse_lookup_table,
|
|
15
|
+
)
|
|
10
16
|
|
|
11
17
|
from mx_bluesky.beamlines.i24.serial.log import SSX_LOGGER
|
|
12
|
-
from mx_bluesky.beamlines.i24.serial.parameters.constants import BEAM_CENTER_POS
|
|
13
18
|
from mx_bluesky.beamlines.i24.serial.setup_beamline import pv
|
|
14
19
|
from mx_bluesky.beamlines.i24.serial.setup_beamline.ca import caget, caput
|
|
15
20
|
|
|
@@ -21,6 +26,35 @@ def get_beam_center_device(detector_in_use: str) -> DetectorBeamCenter:
|
|
|
21
26
|
return i24.pilatus_beam_center()
|
|
22
27
|
|
|
23
28
|
|
|
29
|
+
def compute_beam_center_position_from_lut(
|
|
30
|
+
lut_path: Path,
|
|
31
|
+
detector_distance_mm: float,
|
|
32
|
+
det_size_constants: DetectorSizeConstants,
|
|
33
|
+
) -> tuple[float, float]:
|
|
34
|
+
"""Calculate the beam center position for the detector distance \
|
|
35
|
+
using the values in the lookup table for the conversion.
|
|
36
|
+
"""
|
|
37
|
+
lut_values = parse_lookup_table(lut_path.as_posix())
|
|
38
|
+
|
|
39
|
+
calc_x = linear_interpolation_lut(lut_values[0], lut_values[1])
|
|
40
|
+
beam_x_mm = calc_x(detector_distance_mm)
|
|
41
|
+
beam_x = (
|
|
42
|
+
beam_x_mm
|
|
43
|
+
* det_size_constants.det_size_pixels.width
|
|
44
|
+
/ det_size_constants.det_dimension.width
|
|
45
|
+
)
|
|
46
|
+
|
|
47
|
+
calc_y = linear_interpolation_lut(lut_values[0], lut_values[2])
|
|
48
|
+
beam_y_mm = calc_y(detector_distance_mm)
|
|
49
|
+
beam_y = (
|
|
50
|
+
beam_y_mm
|
|
51
|
+
* det_size_constants.det_size_pixels.height
|
|
52
|
+
/ det_size_constants.det_dimension.height
|
|
53
|
+
)
|
|
54
|
+
|
|
55
|
+
return beam_x, beam_y
|
|
56
|
+
|
|
57
|
+
|
|
24
58
|
def setup_beamline_for_collection_plan(
|
|
25
59
|
aperture: Aperture,
|
|
26
60
|
backlight: DualBacklight,
|
|
@@ -55,22 +89,17 @@ def move_detector_stage_to_position_plan(
|
|
|
55
89
|
|
|
56
90
|
def set_detector_beam_center_plan(
|
|
57
91
|
beam_center_device: DetectorBeamCenter,
|
|
58
|
-
|
|
92
|
+
beam_center_pixels: tuple[float, float],
|
|
59
93
|
group: str = "set_beamcenter",
|
|
60
94
|
wait: bool = True,
|
|
61
95
|
):
|
|
62
96
|
"""A small temporary plan to set up the beam center on the detector in use."""
|
|
63
97
|
# NOTE This will be removed once the detectors are using ophyd_async devices
|
|
64
98
|
# See https://github.com/DiamondLightSource/mx-bluesky/issues/62
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
)
|
|
68
|
-
yield from bps.abs_set(
|
|
69
|
-
beam_center_device.beam_x, BEAM_CENTER_POS[detector_name][0], group=group
|
|
70
|
-
)
|
|
71
|
-
yield from bps.abs_set(
|
|
72
|
-
beam_center_device.beam_y, BEAM_CENTER_POS[detector_name][1], group=group
|
|
73
|
-
)
|
|
99
|
+
beam_position_x, beam_position_y = beam_center_pixels
|
|
100
|
+
SSX_LOGGER.info(f"Setting beam center to: {beam_position_x}, {beam_position_y}")
|
|
101
|
+
yield from bps.abs_set(beam_center_device.beam_x, beam_position_x, group=group)
|
|
102
|
+
yield from bps.abs_set(beam_center_device.beam_y, beam_position_y, group=group)
|
|
74
103
|
if wait:
|
|
75
104
|
yield from bps.wait(group=group)
|
|
76
105
|
|