musica 0.10.0__tar.gz → 0.10.1__tar.gz

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  1. {musica-0.10.0 → musica-0.10.1}/CMakeLists.txt +1 -1
  2. {musica-0.10.0 → musica-0.10.1}/PKG-INFO +1 -1
  3. {musica-0.10.0 → musica-0.10.1}/cmake/dependencies.cmake +2 -1
  4. {musica-0.10.0 → musica-0.10.1}/.clang-format +0 -0
  5. {musica-0.10.0 → musica-0.10.1}/.clang-tidy +0 -0
  6. {musica-0.10.0 → musica-0.10.1}/.dockerignore +0 -0
  7. {musica-0.10.0 → musica-0.10.1}/.github/workflows/clang_format.yml +0 -0
  8. {musica-0.10.0 → musica-0.10.1}/.github/workflows/clang_tidy.yml +0 -0
  9. {musica-0.10.0 → musica-0.10.1}/.github/workflows/close_stale_issues.yml +0 -0
  10. {musica-0.10.0 → musica-0.10.1}/.github/workflows/docker.yml +0 -0
  11. {musica-0.10.0 → musica-0.10.1}/.github/workflows/fetch_content_integration.yml +0 -0
  12. {musica-0.10.0 → musica-0.10.1}/.github/workflows/format-python.yml +0 -0
  13. {musica-0.10.0 → musica-0.10.1}/.github/workflows/gh_pages.yml +0 -0
  14. {musica-0.10.0 → musica-0.10.1}/.github/workflows/mac.yml +0 -0
  15. {musica-0.10.0 → musica-0.10.1}/.github/workflows/python-tests.yml +0 -0
  16. {musica-0.10.0 → musica-0.10.1}/.github/workflows/release.yml +0 -0
  17. {musica-0.10.0 → musica-0.10.1}/.github/workflows/ubuntu.yml +0 -0
  18. {musica-0.10.0 → musica-0.10.1}/.github/workflows/windows.yml +0 -0
  19. {musica-0.10.0 → musica-0.10.1}/.gitignore +0 -0
  20. {musica-0.10.0 → musica-0.10.1}/CITATION.cff +0 -0
  21. {musica-0.10.0 → musica-0.10.1}/LICENSE +0 -0
  22. {musica-0.10.0 → musica-0.10.1}/README.md +0 -0
  23. {musica-0.10.0 → musica-0.10.1}/cmake/FindSphinx.cmake +0 -0
  24. {musica-0.10.0 → musica-0.10.1}/cmake/SetDefaults.cmake +0 -0
  25. {musica-0.10.0 → musica-0.10.1}/cmake/cmake_uninstall.cmake.in +0 -0
  26. {musica-0.10.0 → musica-0.10.1}/cmake/musica.settings.in +0 -0
  27. {musica-0.10.0 → musica-0.10.1}/cmake/musicaConfig.cmake.in +0 -0
  28. {musica-0.10.0 → musica-0.10.1}/cmake/silence_warnings.cmake +0 -0
  29. {musica-0.10.0 → musica-0.10.1}/cmake/summary.cmake +0 -0
  30. {musica-0.10.0 → musica-0.10.1}/cmake/test_util.cmake +0 -0
  31. {musica-0.10.0 → musica-0.10.1}/configs/TS1/config.json +0 -0
  32. {musica-0.10.0 → musica-0.10.1}/configs/TS1/initial_conditions.csv +0 -0
  33. {musica-0.10.0 → musica-0.10.1}/configs/TS1/reactions.json +0 -0
  34. {musica-0.10.0 → musica-0.10.1}/configs/TS1/species.json +0 -0
  35. {musica-0.10.0 → musica-0.10.1}/configs/analytical/config.json +0 -0
  36. {musica-0.10.0 → musica-0.10.1}/configs/analytical/reactions.json +0 -0
  37. {musica-0.10.0 → musica-0.10.1}/configs/analytical/species.json +0 -0
  38. {musica-0.10.0 → musica-0.10.1}/configs/carbon_bond_5/config.json +0 -0
  39. {musica-0.10.0 → musica-0.10.1}/configs/carbon_bond_5/initial_conditions.csv +0 -0
  40. {musica-0.10.0 → musica-0.10.1}/configs/carbon_bond_5/reactions.json +0 -0
  41. {musica-0.10.0 → musica-0.10.1}/configs/carbon_bond_5/species.json +0 -0
  42. {musica-0.10.0 → musica-0.10.1}/configs/chapman/config.json +0 -0
  43. {musica-0.10.0 → musica-0.10.1}/configs/chapman/initial_conditions.csv +0 -0
  44. {musica-0.10.0 → musica-0.10.1}/configs/chapman/reactions.json +0 -0
  45. {musica-0.10.0 → musica-0.10.1}/configs/chapman/species.json +0 -0
  46. {musica-0.10.0 → musica-0.10.1}/configs/robertson/config.json +0 -0
  47. {musica-0.10.0 → musica-0.10.1}/configs/robertson/initial_conditions.csv +0 -0
  48. {musica-0.10.0 → musica-0.10.1}/configs/robertson/reactions.json +0 -0
  49. {musica-0.10.0 → musica-0.10.1}/configs/robertson/species.json +0 -0
  50. {musica-0.10.0 → musica-0.10.1}/configs/v1/chapman/config.json +0 -0
  51. {musica-0.10.0 → musica-0.10.1}/configs/v1/chapman/config.yaml +0 -0
  52. {musica-0.10.0 → musica-0.10.1}/configs/v1/full_configuration.json +0 -0
  53. {musica-0.10.0 → musica-0.10.1}/configs/v1/full_configuration.yaml +0 -0
  54. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile +0 -0
  55. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.docs +0 -0
  56. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.fortran-gcc +0 -0
  57. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.fortran-gcc.integration +0 -0
  58. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.fortran-intel +0 -0
  59. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.fortran-nvhpc +0 -0
  60. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.memcheck +0 -0
  61. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.mpi +0 -0
  62. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.mpi_openmp +0 -0
  63. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.openmp +0 -0
  64. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.pip +0 -0
  65. {musica-0.10.0 → musica-0.10.1}/docker/Dockerfile.python +0 -0
  66. {musica-0.10.0 → musica-0.10.1}/docs/CMakeLists.txt +0 -0
  67. {musica-0.10.0 → musica-0.10.1}/docs/Makefile +0 -0
  68. {musica-0.10.0 → musica-0.10.1}/docs/Software Development Plan.pdf +0 -0
  69. {musica-0.10.0 → musica-0.10.1}/docs/make.bat +0 -0
  70. {musica-0.10.0 → musica-0.10.1}/docs/requirements.txt +0 -0
  71. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/custom.css +0 -0
  72. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/favicon/favicon.ico +0 -0
  73. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/index_api.svg +0 -0
  74. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/index_contribute.svg +0 -0
  75. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/index_getting_started.svg +0 -0
  76. {musica-0.10.0 → musica-0.10.1}/docs/source/_static/index_user_guide.svg +0 -0
  77. {musica-0.10.0 → musica-0.10.1}/docs/source/api/index.rst +0 -0
  78. {musica-0.10.0 → musica-0.10.1}/docs/source/conf.py +0 -0
  79. {musica-0.10.0 → musica-0.10.1}/docs/source/contributing/index.rst +0 -0
  80. {musica-0.10.0 → musica-0.10.1}/docs/source/getting_started/getting_started.rst +0 -0
  81. {musica-0.10.0 → musica-0.10.1}/docs/source/getting_started/installation.rst +0 -0
  82. {musica-0.10.0 → musica-0.10.1}/docs/source/getting_started/overview.rst +0 -0
  83. {musica-0.10.0 → musica-0.10.1}/docs/source/index.rst +0 -0
  84. {musica-0.10.0 → musica-0.10.1}/docs/source/references.bib +0 -0
  85. {musica-0.10.0 → musica-0.10.1}/docs/source/tutorial/chapter0.rst +0 -0
  86. {musica-0.10.0 → musica-0.10.1}/docs/source/tutorial/chapter1.rst +0 -0
  87. {musica-0.10.0 → musica-0.10.1}/docs/source/tutorial/chapter2.rst +0 -0
  88. {musica-0.10.0 → musica-0.10.1}/docs/source/tutorial/tutorial.rst +0 -0
  89. {musica-0.10.0 → musica-0.10.1}/docs/source/user_guide/configurations.rst +0 -0
  90. {musica-0.10.0 → musica-0.10.1}/docs/source/user_guide/fortran_c.rst +0 -0
  91. {musica-0.10.0 → musica-0.10.1}/docs/source/user_guide/index.rst +0 -0
  92. {musica-0.10.0 → musica-0.10.1}/fortran/CMakeLists.txt +0 -0
  93. {musica-0.10.0 → musica-0.10.1}/fortran/micm/CMakeLists.txt +0 -0
  94. {musica-0.10.0 → musica-0.10.1}/fortran/micm/micm.F90 +0 -0
  95. {musica-0.10.0 → musica-0.10.1}/fortran/packaging/CMakeLists.txt +0 -0
  96. {musica-0.10.0 → musica-0.10.1}/fortran/test/CMakeLists.txt +0 -0
  97. {musica-0.10.0 → musica-0.10.1}/fortran/test/fetch_content_integration/CMakeLists.txt +0 -0
  98. {musica-0.10.0 → musica-0.10.1}/fortran/test/fetch_content_integration/test_get_micm_version.F90 +0 -0
  99. {musica-0.10.0 → musica-0.10.1}/fortran/test/fetch_content_integration/test_micm_api.F90 +0 -0
  100. {musica-0.10.0 → musica-0.10.1}/fortran/test/fetch_content_integration/test_micm_box_model.F90 +0 -0
  101. {musica-0.10.0 → musica-0.10.1}/fortran/test/fetch_content_integration/test_tuvx_api.F90 +0 -0
  102. {musica-0.10.0 → musica-0.10.1}/fortran/test/tutorial/CMakeLists.txt +0 -0
  103. {musica-0.10.0 → musica-0.10.1}/fortran/test/tutorial/demo.F90 +0 -0
  104. {musica-0.10.0 → musica-0.10.1}/fortran/test/unit/CMakeLists.txt +0 -0
  105. {musica-0.10.0 → musica-0.10.1}/fortran/test/unit/tuvx.F90 +0 -0
  106. {musica-0.10.0 → musica-0.10.1}/fortran/test/unit/tuvx_mpi.F90 +0 -0
  107. {musica-0.10.0 → musica-0.10.1}/fortran/test/unit/tuvx_openmp.F90 +0 -0
  108. {musica-0.10.0 → musica-0.10.1}/fortran/test/unit/util.F90 +0 -0
  109. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/CMakeLists.txt +0 -0
  110. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/grid.F90 +0 -0
  111. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/grid_map.F90 +0 -0
  112. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/profile.F90 +0 -0
  113. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/profile_map.F90 +0 -0
  114. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/radiator.F90 +0 -0
  115. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/radiator_map.F90 +0 -0
  116. {musica-0.10.0 → musica-0.10.1}/fortran/tuvx/tuvx.F90 +0 -0
  117. {musica-0.10.0 → musica-0.10.1}/fortran/util.F90 +0 -0
  118. {musica-0.10.0 → musica-0.10.1}/include/musica/component_versions.hpp +0 -0
  119. {musica-0.10.0 → musica-0.10.1}/include/musica/error.hpp +0 -0
  120. {musica-0.10.0 → musica-0.10.1}/include/musica/micm/chemistry.hpp +0 -0
  121. {musica-0.10.0 → musica-0.10.1}/include/musica/micm/micm.hpp +0 -0
  122. {musica-0.10.0 → musica-0.10.1}/include/musica/micm/parse.hpp +0 -0
  123. {musica-0.10.0 → musica-0.10.1}/include/musica/micm/state.hpp +0 -0
  124. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/grid.hpp +0 -0
  125. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/grid_map.hpp +0 -0
  126. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/profile.hpp +0 -0
  127. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/profile_map.hpp +0 -0
  128. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/radiator.hpp +0 -0
  129. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/radiator_map.hpp +0 -0
  130. {musica-0.10.0 → musica-0.10.1}/include/musica/tuvx/tuvx.hpp +0 -0
  131. {musica-0.10.0 → musica-0.10.1}/include/musica/util.hpp +0 -0
  132. {musica-0.10.0 → musica-0.10.1}/include/musica/version.hpp +0 -0
  133. {musica-0.10.0 → musica-0.10.1}/pyproject.toml +0 -0
  134. {musica-0.10.0 → musica-0.10.1}/python/CMakeLists.txt +0 -0
  135. {musica-0.10.0 → musica-0.10.1}/python/test/test_analytical.py +0 -0
  136. {musica-0.10.0 → musica-0.10.1}/python/test/test_chapman.py +0 -0
  137. {musica-0.10.0 → musica-0.10.1}/python/test/tuvx.py +0 -0
  138. {musica-0.10.0 → musica-0.10.1}/python/wrapper.cpp +0 -0
  139. {musica-0.10.0 → musica-0.10.1}/src/CMakeLists.txt +0 -0
  140. {musica-0.10.0 → musica-0.10.1}/src/component_versions.cpp +0 -0
  141. {musica-0.10.0 → musica-0.10.1}/src/micm/CMakeLists.txt +0 -0
  142. {musica-0.10.0 → musica-0.10.1}/src/micm/micm.cpp +0 -0
  143. {musica-0.10.0 → musica-0.10.1}/src/micm/parse.cpp +0 -0
  144. {musica-0.10.0 → musica-0.10.1}/src/micm/state.cpp +0 -0
  145. {musica-0.10.0 → musica-0.10.1}/src/micm/v0_parse.cpp +0 -0
  146. {musica-0.10.0 → musica-0.10.1}/src/micm/v1_parse.cpp +0 -0
  147. {musica-0.10.0 → musica-0.10.1}/src/packaging/CMakeLists.txt +0 -0
  148. {musica-0.10.0 → musica-0.10.1}/src/packaging/modulefile.lua.in +0 -0
  149. {musica-0.10.0 → musica-0.10.1}/src/test/CMakeLists.txt +0 -0
  150. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/O2_cross_section.nc +0 -0
  151. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/O2_parameters.txt +0 -0
  152. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/bar_cross_section.nc +0 -0
  153. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/config.json +0 -0
  154. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/foo_cross_section.nc +0 -0
  155. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/fixed/stand_alone_tuvx_config.json +0 -0
  156. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/from_host/O2_cross_section.nc +0 -0
  157. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/from_host/O2_parameters.txt +0 -0
  158. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/from_host/bar_cross_section.nc +0 -0
  159. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/from_host/config.json +0 -0
  160. {musica-0.10.0 → musica-0.10.1}/src/test/data/tuvx/from_host/foo_cross_section.nc +0 -0
  161. {musica-0.10.0 → musica-0.10.1}/src/test/data/util_index_mapping_from_file.json +0 -0
  162. {musica-0.10.0 → musica-0.10.1}/src/test/unit/CMakeLists.txt +0 -0
  163. {musica-0.10.0 → musica-0.10.1}/src/test/unit/component_versions.cpp +0 -0
  164. {musica-0.10.0 → musica-0.10.1}/src/test/unit/micm/CMakeLists.txt +0 -0
  165. {musica-0.10.0 → musica-0.10.1}/src/test/unit/micm/micm_c_api.cpp +0 -0
  166. {musica-0.10.0 → musica-0.10.1}/src/test/unit/micm/micm_wrapper.cpp +0 -0
  167. {musica-0.10.0 → musica-0.10.1}/src/test/unit/parser.cpp +0 -0
  168. {musica-0.10.0 → musica-0.10.1}/src/test/unit/tuvx/CMakeLists.txt +0 -0
  169. {musica-0.10.0 → musica-0.10.1}/src/test/unit/tuvx/tuvx_c_api.cpp +0 -0
  170. {musica-0.10.0 → musica-0.10.1}/src/test/unit/tuvx/tuvx_run_from_config.cpp +0 -0
  171. {musica-0.10.0 → musica-0.10.1}/src/test/unit/util.cpp +0 -0
  172. {musica-0.10.0 → musica-0.10.1}/src/tuvx/CMakeLists.txt +0 -0
  173. {musica-0.10.0 → musica-0.10.1}/src/tuvx/grid.cpp +0 -0
  174. {musica-0.10.0 → musica-0.10.1}/src/tuvx/grid_map.cpp +0 -0
  175. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface.F90 +0 -0
  176. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_grid.F90 +0 -0
  177. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_grid_map.F90 +0 -0
  178. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_profile.F90 +0 -0
  179. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_profile_map.F90 +0 -0
  180. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_radiator.F90 +0 -0
  181. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_radiator_map.F90 +0 -0
  182. {musica-0.10.0 → musica-0.10.1}/src/tuvx/interface_util.F90 +0 -0
  183. {musica-0.10.0 → musica-0.10.1}/src/tuvx/profile.cpp +0 -0
  184. {musica-0.10.0 → musica-0.10.1}/src/tuvx/profile_map.cpp +0 -0
  185. {musica-0.10.0 → musica-0.10.1}/src/tuvx/radiator.cpp +0 -0
  186. {musica-0.10.0 → musica-0.10.1}/src/tuvx/radiator_map.cpp +0 -0
  187. {musica-0.10.0 → musica-0.10.1}/src/tuvx/tuvx.cpp +0 -0
  188. {musica-0.10.0 → musica-0.10.1}/src/util.cpp +0 -0
  189. {musica-0.10.0 → musica-0.10.1}/src/version.cpp.in +0 -0
  190. {musica-0.10.0 → musica-0.10.1}/valgrind.supp +0 -0
{musica-0.10.0 → musica-0.10.1}/CMakeLists.txt RENAMED
@@ -1,7 +1,7 @@
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  cmake_minimum_required(VERSION 3.21)
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  # must be on the same line so that pyproject.toml can correctly identify the version
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- project(musica-distribution VERSION 0.10.0)
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+ project(musica-distribution VERSION 0.10.1)
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  set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH};${PROJECT_SOURCE_DIR}/cmake)
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  set(CMAKE_USER_MAKE_RULES_OVERRIDE ${CMAKE_MODULE_PATH}/SetDefaults.cmake)
{musica-0.10.0 → musica-0.10.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: musica
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- Version: 0.10.0
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+ Version: 0.10.1
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  Summary: MUSICA is a Python library for performing computational simulations in atmospheric chemistry.
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  Author-Email: Matthew Dawsom <mattdawson@ucar.edu>, Jiwon Gim <jiwongim@ucar.edu>, David Fillmore <fillmore@ucar.edu>, Kyle Shores <kshores@ucar.edu>, Montek Thind <mthind@ucar.edu>
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  Maintainer-Email: ACOM MUSICA Developers <musica-support@ucar.edu>
{musica-0.10.0 → musica-0.10.1}/cmake/dependencies.cmake RENAMED
@@ -23,7 +23,8 @@ endif()
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  # Mechanism Configuration
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  set_git_default(MECH_CONFIG_GIT_REPOSITORY https://github.com/NCAR/MechanismConfiguration.git)
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- set_git_default(MECH_CONFIG_GIT_TAG 6adc8833a6282809debec21651bd6e4b85fc6e34)
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+ set_git_default(MECH_CONFIG_GIT_TAG v0.1.1)
27
+
27
28
 
28
29
  FetchContent_Declare(mechanism_configuration
29
30
  GIT_REPOSITORY ${MECH_CONFIG_GIT_REPOSITORY}
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