muse 0.2.0__tar.gz → 0.2.2__tar.gz

{muse-0.2.0 → muse-0.2.2}/CHANGELOG.rst

@@ -1,3 +1,12 @@
+0.2.1 (2026-09-07)
+==================
+
+Internal Changes
+----------------
+
+- Declare Dask, Zarr, netCDF4, and SciPy explicitly instead of relying on xarray extras, and skip tests requiring unavailable optional science dependencies. (`#102 <https://github.com/LM-SAL/muse/pull/102>`__)
+
+
 0.2.0 (2026-09-07)
 ==================
 

{muse-0.2.0/muse.egg-info → muse-0.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: muse
-Version: 0.2.0
+Version: 0.2.2
 Summary: A library to reduce and analyze data from the MUSE Mission.
 Author-email: MUSE Instrument Team <nfreij@seti.org>
 Project-URL: Documentation, https://muse-lmsal.readthedocs.io/en/latest/
@@ -23,10 +23,14 @@ Description-Content-Type: text/x-rst
 License-File: licenses/LICENSE.rst
 Requires-Dist: astropy>=8.0
 Requires-Dist: attrs>=26.1.0
-Requires-Dist: loguru>=0.7.3
+Requires-Dist: dask[array]>=2026.8.0
+Requires-Dist: loguru>=0.7.0
+Requires-Dist: netCDF4>=1.7.0
 Requires-Dist: numpy>=2.5.0
+Requires-Dist: scipy>=1.18.0
 Requires-Dist: tqdm>=4.70
-Requires-Dist: xarray[io,parallel]>=2026.7.0
+Requires-Dist: xarray>=2026.7.0
+Requires-Dist: zarr>=3.3.0
 Provides-Extra: all
 Requires-Dist: muse[chianti,torch]; extra == "all"
 Provides-Extra: chianti

{muse-0.2.0 → muse-0.2.2}/muse/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '0.2.0'
-__version_tuple__ = version_tuple = (0, 2, 0)
+__version__ = version = '0.2.2'
+__version_tuple__ = version_tuple = (0, 2, 2)
 
-__commit_id__ = commit_id = 'gc9eabe1e2'
+__commit_id__ = commit_id = 'gd336a0a5f'

{muse-0.2.0 → muse-0.2.2}/muse/instrument/tests/test_figures.py

@@ -1,11 +1,15 @@
 import matplotlib.pyplot as plt
 import numpy as np
+import pytest
 
 import astropy.units as u
 
 from muse.instrument.spectral import create_spectral_response
 from muse.tests.helpers import figure_test, synthetic_effective_area, synthetic_line_list
 
+pytest.importorskip("numexpr")
+pytest.importorskip("periodictable")
+
 WAVELENGTH_GRID = np.linspace(170.75, 171.25, 501) * u.AA
 
 

{muse-0.2.0 → muse-0.2.2}/muse/instrument/tests/test_linelist.py

@@ -165,6 +165,7 @@ def test_no_lines_raises(monkeypatch):
 
 
 def test_missing_xuvtop_raises(monkeypatch):
+    pytest.importorskip("ChiantiPy")
     monkeypatch.delenv("XUVTOP", raising=False)
     temperature = xr.DataArray([1e6] * u.K, dims="logT")
     pressure = xr.DataArray([3e15] * u.K / u.cm**3, dims="pressure")
@@ -174,10 +175,11 @@ def test_missing_xuvtop_raises(monkeypatch):
 
 @pytest.mark.chianti
 def test_create_chianti_line_list_live_minimum_abundance_scalar_grid(monkeypatch):
+    pytest.importorskip("ChiantiPy")
     assert os.environ.get("XUVTOP")
     with warnings.catch_warnings():
         warnings.simplefilter("ignore", RuntimeWarning)
-        import ChiantiPy.tools.data as chdata  # noqa: PLC0415
+        chdata = pytest.importorskip("ChiantiPy.tools.data")
 
     monkeypatch.delattr(chdata, "Defaults")
     temperature = xr.DataArray([1e6] * u.K, dims="logT")
@@ -203,6 +205,7 @@ def test_create_chianti_line_list_live_minimum_abundance_scalar_grid(monkeypatch
 
 @pytest.mark.chianti
 def test_create_chianti_line_list_live_density():
+    pytest.importorskip("ChiantiPy")
     assert os.environ.get("XUVTOP")
     temperature = xr.DataArray(10 ** np.arange(5.6, 6.2, 0.2) * u.K, dims="logT")
     density = xr.DataArray([1e8, 1e9] / u.cm**3, dims="density")

{muse-0.2.0 → muse-0.2.2}/muse/instrument/tests/test_response.py

@@ -404,6 +404,9 @@ def test_map_response_to_ci_detector_rejects_invalid_inputs(case, error, match):
 )
 @pytest.mark.chianti
 def test_public_response_workflow_composes_through_moment_analysis(tmp_path):
+    pytest.importorskip("ChiantiPy")
+    pytest.importorskip("numexpr")
+    pytest.importorskip("periodictable")
     line_list = create_chianti_line_list(
         xr.DataArray([1e6] * u.K, dims="logT"),
         pressure=xr.DataArray([3e15] * u.K / u.cm**3, dims="pressure"),

{muse-0.2.0 → muse-0.2.2}/muse/instrument/tests/test_spectral.py

@@ -17,6 +17,9 @@ from muse.instrument.spectral import _evaluate_gaussian_response, create_spectra
 from muse.tests.helpers import synthetic_effective_area, synthetic_line_list
 from muse.variables import DEFAULTS_MUSE
 
+pytest.importorskip("numexpr")
+pytest.importorskip("periodictable")
+
 RESPONSE_NORMALIZATION = 1e-27
 DEFAULT_WAVELENGTH_GRID = np.arange(170.0, 172.002, 0.002) * u.AA
 DOPPLER_VELOCITY = np.array([-200.0, 0.0, 200.0]) * u.km / u.s
@@ -127,7 +130,8 @@ def test_gaussian_window_matches_full_grid():
     expected = gofnt_scaled.data * np.exp(-0.5 * (shift.data / width.data) ** 2) / gaussian_norm / width.data
 
     response, _ = _evaluate_gaussian_response(wavelength_grid, line_center, doppler_width, gofnt, gaussian_norm)
-    np.testing.assert_allclose(response, expected, rtol=1e-15, atol=0)
+    # NumPy and numexpr can underflow differently in the subnormal Gaussian tails.
+    np.testing.assert_allclose(response, expected, rtol=1e-15, atol=np.finfo(expected.dtype).tiny)
 
     response, _ = _evaluate_gaussian_response(
         wavelength_grid,

{muse-0.2.0 → muse-0.2.2}/muse/synthesis/tests/test_backends.py

@@ -40,7 +40,9 @@ def test_numpy_to_torch_caps_precision_at_float32() -> None:
 
 @pytest.mark.cuda
 def test_torch_numpy_round_trip_cuda() -> None:
-    pytest.importorskip("torch")
+    torch = pytest.importorskip("torch")
+    if not torch.cuda.is_available():
+        pytest.skip("CUDA is not available")
     array = np.arange(6.0).reshape(2, 3)
     tensor = numpy_to_torch(array, cuda_device=0)
     assert tensor.is_cuda

{muse-0.2.0 → muse-0.2.2}/muse/synthesis/tests/test_synthesis.py

@@ -384,6 +384,9 @@ def test_vdem_synthesis_converts_wavelength_coords_to_angstrom(response, raster)
 
 @pytest.mark.cuda
 def test_vdem_synthesis_cuda_matches_cpu(response, raster) -> None:
+    torch = pytest.importorskip("torch")
+    if not torch.cuda.is_available():
+        pytest.skip("CUDA is not available")
     cpu = vdem_synthesis(raster, response)
     gpu = vdem_synthesis(raster, response, cuda_device=0, backend="torch")
     assert_dataset_structure(

{muse-0.2.0 → muse-0.2.2/muse.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: muse
-Version: 0.2.0
+Version: 0.2.2
 Summary: A library to reduce and analyze data from the MUSE Mission.
 Author-email: MUSE Instrument Team <nfreij@seti.org>
 Project-URL: Documentation, https://muse-lmsal.readthedocs.io/en/latest/
@@ -23,10 +23,14 @@ Description-Content-Type: text/x-rst
 License-File: licenses/LICENSE.rst
 Requires-Dist: astropy>=8.0
 Requires-Dist: attrs>=26.1.0
-Requires-Dist: loguru>=0.7.3
+Requires-Dist: dask[array]>=2026.8.0
+Requires-Dist: loguru>=0.7.0
+Requires-Dist: netCDF4>=1.7.0
 Requires-Dist: numpy>=2.5.0
+Requires-Dist: scipy>=1.18.0
 Requires-Dist: tqdm>=4.70
-Requires-Dist: xarray[io,parallel]>=2026.7.0
+Requires-Dist: xarray>=2026.7.0
+Requires-Dist: zarr>=3.3.0
 Provides-Extra: all
 Requires-Dist: muse[chianti,torch]; extra == "all"
 Provides-Extra: chianti

{muse-0.2.0 → muse-0.2.2}/muse.egg-info/requires.txt

@@ -1,9 +1,13 @@
 astropy>=8.0
 attrs>=26.1.0
-loguru>=0.7.3
+dask[array]>=2026.8.0
+loguru>=0.7.0
+netCDF4>=1.7.0
 numpy>=2.5.0
+scipy>=1.18.0
 tqdm>=4.70
-xarray[io,parallel]>=2026.7.0
+xarray>=2026.7.0
+zarr>=3.3.0
 
 [all]
 muse[chianti,torch]

{muse-0.2.0 → muse-0.2.2}/muse.egg-info/scm_version.json

@@ -1,7 +1,7 @@
 {
-  "tag": "0.2.0",
+  "tag": "0.2.2",
   "distance": 0,
-  "node": "gc9eabe1e2aaaf15daadff373ba7dcd2cd09b7347",
+  "node": "gd336a0a5f2e32971d60d0bb35158bc90b439e31b",
   "dirty": false,
   "branch": "HEAD",
   "node_date": "2026-09-07"

{muse-0.2.0 → muse-0.2.2}/pyproject.toml

@@ -27,10 +27,14 @@ urls."Source Code" = "https://github.com/LM-SAL/muse"
 dependencies = [
   "astropy>=8.0",
   "attrs>=26.1.0",
-  "loguru>=0.7.3",
+  "dask[array]>=2026.8.0",
+  "loguru>=0.7.0",
+  "netCDF4>=1.7.0",
   "numpy>=2.5.0",
+  "scipy>=1.18.0",
   "tqdm>=4.70",
-  "xarray[io,parallel]>=2026.7.0",
+  "xarray>=2026.7.0",
+  "zarr>=3.3.0",
 ]
 optional-dependencies.all = ["muse[chianti,torch]"]
 optional-dependencies.chianti = [