multipers 2.5.0b2__tar.gz → 2.5.0b4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (559) hide show
  1. multipers-2.5.0b4/CMakeLists.txt +28 -0
  2. {multipers-2.5.0b2 → multipers-2.5.0b4}/PKG-INFO +1 -1
  3. {multipers-2.5.0b2 → multipers-2.5.0b4}/THIRD_PARTY_NOTICES.md +12 -0
  4. multipers-2.5.0b4/_tempita_grid_gen.py +6 -0
  5. multipers-2.5.0b4/cmake/MultipersBuild.cmake +410 -0
  6. multipers-2.5.0b4/cmake/MultipersCodegen.cmake +125 -0
  7. multipers-2.5.0b4/cmake/MultipersDependencies.cmake +109 -0
  8. multipers-2.5.0b4/cmake/MultipersInstall.cmake +31 -0
  9. multipers-2.5.0b4/ext/AIDA/CITATION.cff +13 -0
  10. multipers-2.5.0b4/ext/AIDA/README.md +201 -0
  11. multipers-2.5.0b4/ext/AIDA/visualise_pointset.py +49 -0
  12. multipers-2.5.0b4/ext/AIDA/visualise_pres.py +129 -0
  13. multipers-2.5.0b4/ext/AIDA/visualise_reso.py +383 -0
  14. multipers-2.5.0b4/ext/Persistence-Algebra/CITATION.cff +13 -0
  15. multipers-2.5.0b4/ext/Persistence-Algebra/README.md +1 -0
  16. multipers-2.5.0b4/ext/Persistence-Algebra/visualise_reso.py +381 -0
  17. multipers-2.5.0b4/ext/function_delaunay/README.md +95 -0
  18. multipers-2.5.0b4/ext/function_delaunay/alpha_from_gudhi.py +69 -0
  19. multipers-2.5.0b4/ext/function_delaunay/misc/compare_simplices.py +63 -0
  20. multipers-2.5.0b4/ext/function_delaunay/misc/generate_summaries.py +120 -0
  21. multipers-2.5.0b4/ext/function_delaunay/misc/points_on_cube.py +22 -0
  22. multipers-2.5.0b4/ext/function_delaunay/misc/points_on_sphere.py +29 -0
  23. multipers-2.5.0b4/ext/function_delaunay/misc/points_on_torus.py +34 -0
  24. multipers-2.5.0b4/ext/function_delaunay/phat/README.md +148 -0
  25. multipers-2.5.0b4/ext/mpfree/README.md +69 -0
  26. multipers-2.5.0b4/ext/multi_chunk/README.md +57 -0
  27. multipers-2.5.0b4/ext/multi_critical/README.md +83 -0
  28. multipers-2.5.0b4/ext/phat/COPYING +674 -0
  29. multipers-2.5.0b4/ext/phat/COPYING.LESSER +165 -0
  30. multipers-2.5.0b4/ext/phat/INSTALL +1 -0
  31. multipers-2.5.0b4/ext/phat/README.md +147 -0
  32. multipers-2.5.0b4/ext/phat/addons/alpha_3.cpp +448 -0
  33. multipers-2.5.0b4/ext/phat/addons/rips.cpp +91 -0
  34. multipers-2.5.0b4/ext/phat/examples/single_triangle.dat +12 -0
  35. multipers-2.5.0b4/ext/phat/examples/single_triangle_persistence_pairs.dat +4 -0
  36. multipers-2.5.0b4/ext/phat/include/phat/algorithms/chunk_reduction.h +226 -0
  37. multipers-2.5.0b4/ext/phat/include/phat/algorithms/row_reduction.h +56 -0
  38. multipers-2.5.0b4/ext/phat/include/phat/algorithms/spectral_sequence_reduction.h +80 -0
  39. multipers-2.5.0b4/ext/phat/include/phat/algorithms/standard_reduction.h +46 -0
  40. multipers-2.5.0b4/ext/phat/include/phat/algorithms/twist_reduction.h +51 -0
  41. multipers-2.5.0b4/ext/phat/include/phat/boundary_matrix.h +347 -0
  42. multipers-2.5.0b4/ext/phat/include/phat/compute_persistence_pairs.h +61 -0
  43. multipers-2.5.0b4/ext/phat/include/phat/helpers/dualize.h +74 -0
  44. multipers-2.5.0b4/ext/phat/include/phat/helpers/misc.h +75 -0
  45. multipers-2.5.0b4/ext/phat/include/phat/helpers/thread_local_storage.h +52 -0
  46. multipers-2.5.0b4/ext/phat/include/phat/persistence_pairs.h +155 -0
  47. multipers-2.5.0b4/ext/phat/include/phat/representations/abstract_pivot_column.h +102 -0
  48. multipers-2.5.0b4/ext/phat/include/phat/representations/bit_tree_pivot_column.h +165 -0
  49. multipers-2.5.0b4/ext/phat/include/phat/representations/full_pivot_column.h +100 -0
  50. multipers-2.5.0b4/ext/phat/include/phat/representations/heap_pivot_column.h +126 -0
  51. multipers-2.5.0b4/ext/phat/include/phat/representations/sparse_pivot_column.h +79 -0
  52. multipers-2.5.0b4/ext/phat/include/phat/representations/vector_heap.h +170 -0
  53. multipers-2.5.0b4/ext/phat/include/phat/representations/vector_list.h +101 -0
  54. multipers-2.5.0b4/ext/phat/include/phat/representations/vector_set.h +99 -0
  55. multipers-2.5.0b4/ext/phat/include/phat/representations/vector_vector.h +107 -0
  56. multipers-2.5.0b4/ext/phat/python/MANIFEST.in +1 -0
  57. multipers-2.5.0b4/ext/phat/python/README.rst +142 -0
  58. multipers-2.5.0b4/ext/phat/python/_phat.cpp +291 -0
  59. multipers-2.5.0b4/ext/phat/python/phat.py +321 -0
  60. multipers-2.5.0b4/ext/phat/python/setup.cfg +5 -0
  61. multipers-2.5.0b4/ext/phat/python/src/self_test.py +166 -0
  62. multipers-2.5.0b4/ext/phat/python/src/simple_example.py +55 -0
  63. multipers-2.5.0b4/ext/phat/setup.py +73 -0
  64. multipers-2.5.0b4/ext/phat/src/benchmark.cpp +348 -0
  65. multipers-2.5.0b4/ext/phat/src/convert.cpp +85 -0
  66. multipers-2.5.0b4/ext/phat/src/info.cpp +77 -0
  67. multipers-2.5.0b4/ext/phat/src/phat.cpp +190 -0
  68. multipers-2.5.0b4/ext/phat/src/self_test.cpp +225 -0
  69. multipers-2.5.0b4/ext/phat/src/simple_example.cpp +127 -0
  70. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/README.md +117 -0
  71. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/catch2/catch.hpp +14367 -0
  72. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/bifiltration_cell.h +47 -0
  73. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/cell_with_radius.h +18 -0
  74. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/combinatorial_bifiltration_cell.h +49 -0
  75. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_2.h +58 -0
  76. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_3.h +60 -0
  77. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/firep.h +66 -0
  78. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/main.cpp +267 -0
  79. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid.cpp +92 -0
  80. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid.h +85 -0
  81. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling.h +176 -0
  82. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling_impl.h +825 -0
  83. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_with_radius.h +18 -0
  84. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/tests_2d.cpp +366 -0
  85. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/tests_3d.cpp +796 -0
  86. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/testutils.h +29 -0
  87. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/types.h +15 -0
  88. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/utils.cpp +78 -0
  89. multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/utils.h +60 -0
  90. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_function_delaunay_interface.pyx +38 -16
  91. multipers-2.5.0b4/multipers/_mpfree_interface.pyx +96 -0
  92. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_multi_critical_interface.pyx +81 -9
  93. multipers-2.5.0b4/multipers/_rhomboid_tiling_interface.pyx +94 -0
  94. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_signed_measure_meta.py +2 -28
  95. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_slicer_meta.py +1 -1
  96. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/array_api/numpy.py +4 -1
  97. multipers-2.5.0b4/multipers/distances.py +202 -0
  98. multipers-2.5.0b4/multipers/ext_interface/contiguous_slicer_bridge.hpp +83 -0
  99. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/function_delaunay_interface.hpp +30 -1
  100. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/mpfree_interface.hpp +67 -0
  101. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/multi_critical_interface.hpp +65 -0
  102. multipers-2.5.0b4/multipers/ext_interface/rhomboid_tiling_interface.hpp +337 -0
  103. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/filtration_conversions.pxd.tp +6 -1
  104. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/filtrations.pxd.tp +5 -1
  105. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/grids.pyx +3 -3
  106. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/Persistence_slices_interface.h +13 -0
  107. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/Simplex_tree_multi_interface.h +4 -0
  108. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Degree_rips_bifiltration.h +43 -40
  109. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Dynamic_multi_parameter_filtration.h +80 -79
  110. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Matrix.h +169 -200
  111. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_filtration/Multi_parameter_generator.h +17 -17
  112. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_filtration/multi_filtration_conversions.h +40 -0
  113. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_parameter_filtration.h +44 -42
  114. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Line.h +62 -29
  115. multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/Module.h +322 -0
  116. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_homology.h +31 -25
  117. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Point.h +7 -0
  118. multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/Summand.h +330 -0
  119. multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/module_helpers.h +473 -0
  120. multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/summand_helpers.h +208 -0
  121. multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_bit_tree_column.h +145 -0
  122. multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_column_interface.h +833 -0
  123. multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_vector_column.h +107 -0
  124. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Slicer.h +51 -41
  125. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/persistence_matrix_options.h +5 -0
  126. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/simple_mdspan.h +5 -2
  127. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/vineyard_base.h +126 -20
  128. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/io.pyx +68 -9
  129. multipers-2.5.0b4/multipers/mma_structures.pxd +113 -0
  130. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/mma_structures.pyx.tp +205 -200
  131. multipers-2.5.0b4/multipers/multiparameter_module_approximation/approximation.h +406 -0
  132. multipers-2.5.0b4/multipers/multiparameter_module_approximation/utilities.h +428 -0
  133. multipers-2.5.0b2/multipers/multiparameter_module_approximation.pyx → multipers-2.5.0b4/multipers/multiparameter_module_approximation.pyx.tp +92 -28
  134. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/simplex_tree_multi.pyx.tp +10 -4
  135. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/slicer.pxd.tp +15 -6
  136. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/slicer.pyx.tp +101 -3
  137. multipers-2.5.0b4/options.py +81 -0
  138. {multipers-2.5.0b2 → multipers-2.5.0b4}/pyproject.toml +88 -71
  139. multipers-2.5.0b4/tools/codegen/__init__.py +1 -0
  140. multipers-2.5.0b4/tools/codegen/_registry.py +40 -0
  141. multipers-2.5.0b4/tools/core/filtrations_core.cc +11 -0
  142. multipers-2.5.0b4/tools/core/simplextree_core.cc +12 -0
  143. multipers-2.5.0b4/tools/core/slicer_core.cc +12 -0
  144. multipers-2.5.0b4/tools/process_tempita.py +60 -0
  145. multipers-2.5.0b4/tools/tempita_grid_gen.py +742 -0
  146. multipers-2.5.0b2/.clang-format +0 -90
  147. multipers-2.5.0b2/CMakeLists.txt +0 -370
  148. multipers-2.5.0b2/MANIFEST.in +0 -11
  149. multipers-2.5.0b2/_tempita_grid_gen.py +0 -306
  150. multipers-2.5.0b2/build_wheel_linux.sh +0 -12
  151. multipers-2.5.0b2/build_wheel_mac.sh +0 -12
  152. multipers-2.5.0b2/environment.yml +0 -37
  153. multipers-2.5.0b2/ext/AIDA/CMakeLists.txt +0 -78
  154. multipers-2.5.0b2/ext/Persistence-Algebra/CMakeLists.txt +0 -73
  155. multipers-2.5.0b2/ext/Persistence-Algebra/tests/dense_matrix_test.cpp +0 -67
  156. multipers-2.5.0b2/ext/Persistence-Algebra/tests/graded_matrix_test.cpp +0 -364
  157. multipers-2.5.0b2/ext/Persistence-Algebra/tests/hom_space_test.cpp +0 -37
  158. multipers-2.5.0b2/ext/Persistence-Algebra/tests/sparse_matrix_test.cpp +0 -207
  159. multipers-2.5.0b2/ext/function_delaunay/CMakeLists.txt +0 -114
  160. multipers-2.5.0b2/ext/mpfree/CMakeLists.txt +0 -51
  161. multipers-2.5.0b2/ext/multi_chunk/CMakeLists.txt +0 -52
  162. multipers-2.5.0b2/ext/multi_critical/CMakeLists.txt +0 -50
  163. multipers-2.5.0b2/multipers/_mpfree_interface.pyx +0 -142
  164. multipers-2.5.0b2/multipers/distances.py +0 -202
  165. multipers-2.5.0b2/multipers/mma_structures.pxd +0 -135
  166. multipers-2.5.0b2/multipers/multiparameter_module_approximation/approximation.h +0 -2585
  167. multipers-2.5.0b2/multipers/multiparameter_module_approximation/utilities.h +0 -428
  168. multipers-2.5.0b2/tools/process_tempita.py +0 -30
  169. {multipers-2.5.0b2 → multipers-2.5.0b4}/CITATION.cff +0 -0
  170. {multipers-2.5.0b2 → multipers-2.5.0b4}/LICENSE +0 -0
  171. {multipers-2.5.0b2 → multipers-2.5.0b4}/README.md +0 -0
  172. {multipers-2.5.0b2 → multipers-2.5.0b4}/compute.py +0 -0
  173. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/LICENSE +0 -0
  174. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/aida.cpp +0 -0
  175. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/birth_death.cpp +0 -0
  176. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/brute_force_mpm_decomposition.cpp +0 -0
  177. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/generate_decompositions.cpp +0 -0
  178. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/aida_interface.hpp +0 -0
  179. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/config.hpp +0 -0
  180. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/option_parser.hpp +0 -0
  181. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/types.hpp +0 -0
  182. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/making_examples.cpp +0 -0
  183. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/minimize_pres.cpp +0 -0
  184. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/mpfree_clone.cpp +0 -0
  185. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/presentation_to_quiver.cpp +0 -0
  186. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/presentation_to_quiver_new.cpp +0 -0
  187. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/resolution.cpp +0 -0
  188. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_decompose.cpp +0 -0
  189. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_decompose.hpp +0 -0
  190. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_functions.cpp +0 -0
  191. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_functions.hpp +0 -0
  192. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_helpers.cpp +0 -0
  193. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_helpers.hpp +0 -0
  194. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_interface.cpp +0 -0
  195. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/block.cpp +0 -0
  196. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/block.hpp +0 -0
  197. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/config.cpp +0 -0
  198. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/option_parser.cpp +0 -0
  199. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/vectorspace_decompositions.cpp +0 -0
  200. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/LICENSE +0 -0
  201. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/analyse_ind.cpp +0 -0
  202. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/birth_death.cpp +0 -0
  203. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/cut_module.cpp +0 -0
  204. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/hom.cpp +0 -0
  205. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/bitset_algebra.hpp +0 -0
  206. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/column_types.hpp +0 -0
  207. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/dense_matrix.hpp +0 -0
  208. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/draw_hf.hpp +0 -0
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  211. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/graded_matrix.hpp +0 -0
  212. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/grid_scheduler.hpp +0 -0
  213. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/homomorphisms.hpp +0 -0
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  216. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/orders_and_graphs.hpp +0 -0
  217. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/r2graded_matrix.hpp +0 -0
  218. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/r3graded_matrix.hpp +0 -0
  219. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/sparse_matrix.hpp +0 -0
  220. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/to_quiver.hpp +0 -0
  221. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/minimize.cpp +0 -0
  222. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/pres_to_quiver.cpp +0 -0
  223. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/resolution.cpp +0 -0
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  226. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/snap_grid.cpp +0 -0
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  228. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/thickness.cpp +0 -0
  229. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/COPYING +0 -0
  230. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/Delaunay_triangulation_accessors.h +0 -0
  231. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/Grade_map.h +0 -0
  232. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/Meb_accessors.h +0 -0
  233. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/Miniball.hpp +0 -0
  234. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/Point_with_densities.h +0 -0
  235. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/boost_timers.h +0 -0
  236. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/compute_meb_radii_of_simplex_tree.h +0 -0
  237. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/count_size_of_delaunay_triangulation.h +0 -0
  238. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/function_delaunay_with_meb.h +0 -0
  239. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/get_simplices_from_triangulation.h +0 -0
  240. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/include/function_delaunay/mem_info.h +0 -0
  241. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/misc/functions.cpp +0 -0
  242. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/Graded_matrix.h +0 -0
  243. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/Grid_scheduler.h +0 -0
  244. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/boost_timers.h +0 -0
  245. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/global.h +0 -0
  246. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree.h +0 -0
  247. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree_subroutines.h +0 -0
  248. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +0 -0
  249. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +0 -0
  250. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +0 -0
  251. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +0 -0
  252. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/basic.h +0 -0
  253. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +0 -0
  254. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +0 -0
  255. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +0 -0
  256. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +0 -0
  257. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/sorting_utility.h +0 -0
  258. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/Graded_matrix.h +0 -0
  259. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/basic.h +0 -0
  260. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/boost_timers.h +0 -0
  261. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/multi_chunk.h +0 -0
  262. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/COPYING +0 -0
  263. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/COPYING.LESSER +0 -0
  264. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/algorithms/chunk_reduction.h +0 -0
  265. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/algorithms/row_reduction.h +0 -0
  266. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/algorithms/spectral_sequence_reduction.h +0 -0
  267. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/algorithms/standard_reduction.h +0 -0
  268. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/algorithms/twist_reduction.h +0 -0
  269. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/boundary_matrix.h +0 -0
  270. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/compute_persistence_pairs.h +0 -0
  271. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/helpers/dualize.h +0 -0
  272. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/helpers/misc.h +0 -0
  273. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/helpers/thread_local_storage.h +0 -0
  274. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/persistence_pairs.h +0 -0
  275. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/Container_traits.h +0 -0
  276. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/Pivot_representation.h +0 -0
  277. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/Uniform_representation.h +0 -0
  278. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/Unordered_map_container_traits.h +0 -0
  279. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/bit_tree_pivot_column.h +0 -0
  280. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/default_representations.h +0 -0
  281. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/full_pivot_column.h +0 -0
  282. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/heap_column_rep.h +0 -0
  283. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/heap_pivot_column.h +0 -0
  284. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/list_column_rep.h +0 -0
  285. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/set_column_rep.h +0 -0
  286. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/sparse_pivot_column.h +0 -0
  287. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/phat/include/phat/representations/vector_column_rep.h +0 -0
  288. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/scc_mod/include/scc/Column_data.h +0 -0
  289. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/scc_mod/include/scc/Scc.h +0 -0
  290. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/scc_mod/include/scc/basic.h +0 -0
  291. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/src/main.cpp +0 -0
  292. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/function_delaunay/src/persistence_up_to_density.cpp +0 -0
  293. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/COPYING +0 -0
  294. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/COPYING.LESSER +0 -0
  295. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/Graded_matrix.h +0 -0
  296. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/Grid_scheduler.h +0 -0
  297. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/boost_timers.h +0 -0
  298. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/global.h +0 -0
  299. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/mpfree.h +0 -0
  300. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/include/mpfree/mpfree_subroutines.h +0 -0
  301. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +0 -0
  302. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +0 -0
  303. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +0 -0
  304. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +0 -0
  305. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/basic.h +0 -0
  306. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +0 -0
  307. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +0 -0
  308. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +0 -0
  309. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +0 -0
  310. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/mpp_utils_mod/include/mpp_utils/sorting_utility.h +0 -0
  311. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/COPYING +0 -0
  312. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/COPYING.LESSER +0 -0
  313. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/boundary_matrix.h +0 -0
  314. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/helpers/misc.h +0 -0
  315. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/helpers/thread_local_storage.h +0 -0
  316. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/Container_traits.h +0 -0
  317. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/Pivot_representation.h +0 -0
  318. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/Uniform_representation.h +0 -0
  319. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/Unordered_map_container_traits.h +0 -0
  320. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/bit_tree_pivot_column.h +0 -0
  321. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/default_representations.h +0 -0
  322. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/full_pivot_column.h +0 -0
  323. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/heap_column_rep.h +0 -0
  324. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/heap_pivot_column.h +0 -0
  325. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/list_column_rep.h +0 -0
  326. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/set_column_rep.h +0 -0
  327. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/sparse_pivot_column.h +0 -0
  328. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/phat_mod/include/phat/representations/vector_column_rep.h +0 -0
  329. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/scc_mod/include/scc/Column_data.h +0 -0
  330. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/scc_mod/include/scc/Scc.h +0 -0
  331. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/scc_mod/include/scc/basic.h +0 -0
  332. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/mpfree/src/mpfree.cpp +0 -0
  333. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/COPYING +0 -0
  334. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/COPYING.LESSER +0 -0
  335. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/include/multi_chunk/Graded_matrix.h +0 -0
  336. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/include/multi_chunk/basic.h +0 -0
  337. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/include/multi_chunk/boost_timers.h +0 -0
  338. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/include/multi_chunk/multi_chunk.h +0 -0
  339. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +0 -0
  340. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +0 -0
  341. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +0 -0
  342. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +0 -0
  343. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/basic.h +0 -0
  344. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +0 -0
  345. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +0 -0
  346. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +0 -0
  347. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +0 -0
  348. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/sorting_utility.h +0 -0
  349. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/phat_mod/include/phat/boundary_matrix.h +0 -0
  350. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/phat_mod/include/phat/helpers/misc.h +0 -0
  351. {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/multi_chunk/phat_mod/include/phat/helpers/thread_local_storage.h +0 -0
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  503. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Persistence_on_rectangle.h +0 -0
  504. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +0 -0
  505. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +0 -0
  506. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +0 -0
  507. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Persistent_cohomology.h +0 -0
  508. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Points_off_io.h +0 -0
  509. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Projective_cover_kernel.h +0 -0
  510. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simple_object_pool.h +0 -0
  511. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +0 -0
  512. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +0 -0
  513. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +0 -0
  514. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +0 -0
  515. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/filtration_value_utils.h +0 -0
  516. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +0 -0
  517. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +0 -0
  518. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +0 -0
  519. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +0 -0
  520. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Simplex_tree.h +0 -0
  521. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Thread_safe_slicer.h +0 -0
  522. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/distance_functions.h +0 -0
  523. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/graph_simplicial_complex.h +0 -0
  524. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/multi_simplex_tree_helpers.h +0 -0
  525. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/persistence_interval.h +0 -0
  526. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/reader_utils.h +0 -0
  527. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/slicer_helpers.h +0 -0
  528. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/tmp_h0_pers/mma_interface_h0.h +0 -0
  529. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/tmp_h0_pers/naive_merge_tree.h +0 -0
  530. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/logs.py +0 -0
  531. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/__init__.py +0 -0
  532. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/accuracies.py +0 -0
  533. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/filtered_complex.py +0 -0
  534. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/invariants_with_persistable.py +0 -0
  535. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/kernels.py +0 -0
  536. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/mma.py +0 -0
  537. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/one.py +0 -0
  538. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/signed_measures.py +0 -0
  539. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/sliced_wasserstein.py +0 -0
  540. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/tools.py +0 -0
  541. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/diff_helpers.h +0 -0
  542. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/euler_characteristic.h +0 -0
  543. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/function_rips.h +0 -0
  544. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/hilbert_function.h +0 -0
  545. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/persistence_slices.h +0 -0
  546. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/rank_invariant.h +0 -0
  547. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_edge_collapse.py +0 -0
  548. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_module_approximation/debug.h +0 -0
  549. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_module_approximation/format_python-cpp.h +0 -0
  550. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ops.pyx +0 -0
  551. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/pickle.py +0 -0
  552. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/plots.py +0 -0
  553. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/point_measure.pyx +0 -0
  554. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/simplex_tree_multi.pxd +0 -0
  555. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tensor/tensor.h +0 -0
  556. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tensor.pxd +0 -0
  557. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/test.pyx +0 -0
  558. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tests/__init__.py +0 -0
  559. {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers_old.py +0 -0
@@ -0,0 +1,28 @@
1
+ cmake_minimum_required(VERSION 3.24)
2
+ project(multipers LANGUAGES C CXX)
3
+
4
+ if(POLICY CMP0167)
5
+ cmake_policy(SET CMP0167 NEW)
6
+ endif()
7
+
8
+ set(CMAKE_CXX_STANDARD 20)
9
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
10
+ set(CMAKE_POSITION_INDEPENDENT_CODE ON)
11
+ set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
12
+ set(CMAKE_COLOR_DIAGNOSTICS ON)
13
+
14
+ if(CMAKE_CXX_COMPILER_ID MATCHES "GNU|Clang")
15
+ add_compile_options(
16
+ $<$<COMPILE_LANGUAGE:C>:-fdiagnostics-color=always>
17
+ $<$<COMPILE_LANGUAGE:CXX>:-fdiagnostics-color=always>
18
+ )
19
+ endif()
20
+
21
+ if(MSVC)
22
+ add_compile_options(/bigobj)
23
+ endif()
24
+
25
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersDependencies.cmake")
26
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersCodegen.cmake")
27
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersBuild.cmake")
28
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersInstall.cmake")
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: multipers
3
- Version: 2.5.0b2
3
+ Version: 2.5.0b4
4
4
  Summary: Multiparameter Topological Persistence for Machine Learning
5
5
  Keywords: TDA,Persistence,Multiparameter,sklearn,autodiff
6
6
  Author-Email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
@@ -24,6 +24,12 @@ As a result, distributed `multipers` artifacts built with these components are l
24
24
  - Commit used in this workspace: `a481f8d90af7a97795c467d81fb3db2cf952a58e`
25
25
  - License: GPL-3.0-or-later (see upstream `COPYING`)
26
26
 
27
+ - `rhomboidtiling_newer_cgal_version`
28
+ - Upstream: https://github.com/DavidLapous/rhomboidtiling_newer_cgal_version
29
+ - Header/source path used at build time: `ext/rhomboidtiling_newer_cgal_version`
30
+ - Commit used in this workspace: `c414cdc60f30196ffd3ce5cda1817368655905f0`
31
+ - License: MIT (see `ext/rhomboidtiling_newer_cgal_version/LICENSE.md`)
32
+
27
33
  - `mpfree`
28
34
  - Upstream: https://bitbucket.org/mkerber/mpfree/
29
35
  - Header source path used at build time: `ext/mpfree`
@@ -42,6 +48,12 @@ As a result, distributed `multipers` artifacts built with these components are l
42
48
  - Commit used in this workspace: `d686f7efe623169f00951c376949b8bb30448eaf`
43
49
  - License: LGPL-3.0-or-later (see upstream `COPYING.LESSER`)
44
50
 
51
+ - `PHAT`
52
+ - Upstream: https://github.com/xoltar/phat
53
+ - Header source path used at build time: `ext/phat/include`
54
+ - Commit used in this workspace: `872ca92b33ebe92dff2542cbdee6768e575e80aa`
55
+ - License: LGPL-3.0-or-later (see `ext/phat/COPYING.LESSER`)
56
+
45
57
  ## Notes
46
58
 
47
59
  - Build-time include paths for these dependencies are configured in `CMakeLists.txt`.
@@ -0,0 +1,6 @@
1
+ """Compatibility entrypoint for Tempita grid generation.
2
+
3
+ The implementation lives in tools/tempita_grid_gen.py.
4
+ """
5
+
6
+ from tools.tempita_grid_gen import * # noqa: F401,F403
@@ -0,0 +1,410 @@
1
+ include_guard(GLOBAL)
2
+
3
+ function(multipers_apply_common_build_flags target_name)
4
+ target_compile_definitions(
5
+ ${target_name}
6
+ PRIVATE
7
+ NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION
8
+ GUDHI_USE_TBB
9
+ WITH_TBB=ON
10
+ )
11
+
12
+ if(WIN32)
13
+ target_compile_definitions(
14
+ ${target_name}
15
+ PRIVATE
16
+ MULTIPERS_DISABLE_MPFREE_INTERFACE=1
17
+ MULTIPERS_DISABLE_FUNCTION_DELAUNAY_INTERFACE=1
18
+ MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
19
+ MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
20
+ )
21
+ endif()
22
+
23
+ if(NOT MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER)
24
+ target_compile_definitions(
25
+ ${target_name}
26
+ PRIVATE
27
+ MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
28
+ )
29
+ endif()
30
+
31
+ if(NOT CGAL_FOUND)
32
+ target_compile_definitions(
33
+ ${target_name}
34
+ PRIVATE
35
+ MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
36
+ )
37
+ endif()
38
+
39
+ if(MSVC)
40
+ target_compile_options(${target_name} PRIVATE /O2 /DNDEBUG /W1 /WX- /openmp)
41
+ else()
42
+ target_compile_options(
43
+ ${target_name}
44
+ PRIVATE
45
+ -O3
46
+ -fassociative-math
47
+ -funsafe-math-optimizations
48
+ -DNDEBUG
49
+ -Wall
50
+ -Wextra
51
+ -Wno-assume
52
+ )
53
+ endif()
54
+ endfunction()
55
+
56
+ function(multipers_link_openmp target_name)
57
+ target_link_libraries(${target_name} PRIVATE OpenMP::OpenMP_CXX)
58
+ endfunction()
59
+
60
+ function(multipers_link_tbb target_name)
61
+ if(TARGET TBB::tbb)
62
+ target_link_libraries(${target_name} PRIVATE TBB::tbb)
63
+ elseif(TARGET TBB::tbb_static)
64
+ target_link_libraries(${target_name} PRIVATE TBB::tbb_static)
65
+ else()
66
+ message(FATAL_ERROR "TBB target not found")
67
+ endif()
68
+ endfunction()
69
+
70
+ set(MULTIPERS_SHARED_CORE_MODULES
71
+ simplex_tree_multi
72
+ slicer
73
+ mma_structures
74
+ multiparameter_module_approximation
75
+ _mpfree_interface
76
+ _function_delaunay_interface
77
+ _multi_critical_interface
78
+ _rhomboid_tiling_interface
79
+ )
80
+
81
+ set(MULTIPERS_BOOST_MODULES
82
+ _aida_interface
83
+ _mpfree_interface
84
+ _multi_critical_interface
85
+ _function_delaunay_interface
86
+ )
87
+
88
+ set(MULTIPERS_GMP_MODULE
89
+ _aida_interface
90
+ _mpfree_interface
91
+ _multi_critical_interface
92
+ _function_delaunay_interface
93
+ _rhomboid_tiling_interface
94
+ )
95
+
96
+ set(MULTIPERS_GMP_MODULES ${MULTIPERS_GMP_MODULE})
97
+
98
+ set(MULTIPERS_OPENMP_MODULES
99
+ _aida_interface
100
+ _mpfree_interface
101
+ _multi_critical_interface
102
+ _function_delaunay_interface
103
+ )
104
+
105
+ set(MULTIPERS_TBB_MODULES
106
+ simplex_tree_multi
107
+ function_rips
108
+ mma_structures
109
+ multiparameter_module_approximation
110
+ point_measure
111
+ grids
112
+ slicer
113
+ _mpfree_interface
114
+ _function_delaunay_interface
115
+ _multi_critical_interface
116
+ _rhomboid_tiling_interface
117
+ )
118
+
119
+ set(MULTIPERS_MODULE_INCLUDE_DIR_MAP
120
+ _aida_interface MULTIPERS_AIDA_INCLUDE_DIRS
121
+ _mpfree_interface MULTIPERS_MPFREE_INCLUDE_DIRS
122
+ _multi_critical_interface MULTIPERS_MULTI_CRITICAL_INCLUDE_DIRS
123
+ _function_delaunay_interface MULTIPERS_FUNCTION_DELAUNAY_INCLUDE_DIRS
124
+ _rhomboid_tiling_interface MULTIPERS_RHOMBOID_TILING_INCLUDE_DIRS
125
+ )
126
+
127
+ set(MULTIPERS_FORKED_PHAT_MODULES
128
+ _aida_interface
129
+ _mpfree_interface
130
+ _multi_critical_interface
131
+ _function_delaunay_interface
132
+ )
133
+
134
+ set(MULTIPERS_GENERATED_INCLUDE_DIRS
135
+ "${MULTIPERS_GENERATED_ROOT}/multipers"
136
+ "${MULTIPERS_GENERATED_ROOT}/multipers/gudhi"
137
+ "${MULTIPERS_GENERATED_ROOT}/tools/core"
138
+ )
139
+
140
+ function(multipers_add_core_object_library target_name source_file)
141
+ add_library(${target_name} OBJECT "${source_file}")
142
+ add_dependencies(${target_name} multipers_tempita ${ARGN})
143
+ target_include_directories(
144
+ ${target_name}
145
+ PRIVATE
146
+ ${MULTIPERS_GENERATED_INCLUDE_DIRS}
147
+ ${MULTIPERS_BASE_INCLUDE_DIRS}
148
+ ${MULTIPERS_PHAT_INCLUDE_DIRS}
149
+ )
150
+ multipers_apply_common_build_flags(${target_name})
151
+ endfunction()
152
+
153
+ multipers_add_core_object_library(
154
+ multipers_core_filtrations_obj
155
+ "${CMAKE_SOURCE_DIR}/tools/core/filtrations_core.cc"
156
+ )
157
+
158
+ multipers_add_core_object_library(
159
+ multipers_core_simplextree_obj
160
+ "${CMAKE_SOURCE_DIR}/tools/core/simplextree_core.cc"
161
+ multipers_core_filtrations_obj
162
+ )
163
+
164
+ multipers_add_core_object_library(
165
+ multipers_core_slicer_obj
166
+ "${CMAKE_SOURCE_DIR}/tools/core/slicer_core.cc"
167
+ multipers_core_filtrations_obj
168
+ )
169
+
170
+ add_library(
171
+ multipers_core_shared
172
+ SHARED
173
+ $<TARGET_OBJECTS:multipers_core_filtrations_obj>
174
+ $<TARGET_OBJECTS:multipers_core_simplextree_obj>
175
+ $<TARGET_OBJECTS:multipers_core_slicer_obj>
176
+ )
177
+ add_dependencies(multipers_core_shared multipers_tempita)
178
+ multipers_link_tbb(multipers_core_shared)
179
+
180
+ set(MULTIPERS_LOCAL_RPATH "")
181
+ if(APPLE)
182
+ set(MULTIPERS_LOCAL_RPATH "@loader_path")
183
+ elseif(UNIX)
184
+ set(MULTIPERS_LOCAL_RPATH "$ORIGIN")
185
+ endif()
186
+
187
+ set_target_properties(multipers_core_shared PROPERTIES OUTPUT_NAME "multipers_core")
188
+ if(WIN32)
189
+ set_target_properties(multipers_core_shared PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS ON)
190
+ endif()
191
+ if(MULTIPERS_LOCAL_RPATH)
192
+ set_target_properties(
193
+ multipers_core_shared
194
+ PROPERTIES
195
+ BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}"
196
+ INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}"
197
+ )
198
+ endif()
199
+ if(APPLE)
200
+ set_target_properties(
201
+ multipers_core_shared
202
+ PROPERTIES
203
+ INSTALL_NAME_DIR "@rpath"
204
+ SUFFIX ".so"
205
+ )
206
+ endif()
207
+
208
+ function(multipers_link_shared_core target_name)
209
+ target_link_libraries(${target_name} PRIVATE multipers_core_shared)
210
+ if(MULTIPERS_LOCAL_RPATH)
211
+ set_property(TARGET ${target_name} APPEND PROPERTY BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}")
212
+ set_property(TARGET ${target_name} APPEND PROPERTY INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}")
213
+ endif()
214
+ endfunction()
215
+
216
+ function(multipers_configure_extension_include_dirs module_name target_name)
217
+ list(LENGTH MULTIPERS_MODULE_INCLUDE_DIR_MAP include_dir_map_length)
218
+ if(include_dir_map_length GREATER 1)
219
+ math(EXPR include_dir_map_last "${include_dir_map_length} - 2")
220
+ foreach(i RANGE 0 ${include_dir_map_last} 2)
221
+ math(EXPR j "${i} + 1")
222
+ list(GET MULTIPERS_MODULE_INCLUDE_DIR_MAP ${i} include_module)
223
+ list(GET MULTIPERS_MODULE_INCLUDE_DIR_MAP ${j} include_var)
224
+ if("${module_name}" STREQUAL "${include_module}")
225
+ target_include_directories(${target_name} PRIVATE ${${include_var}})
226
+ break()
227
+ endif()
228
+ endforeach()
229
+ endif()
230
+
231
+ list(FIND MULTIPERS_FORKED_PHAT_MODULES "${module_name}" uses_forked_phat)
232
+ if(uses_forked_phat EQUAL -1)
233
+ target_include_directories(${target_name} BEFORE PRIVATE ${MULTIPERS_PHAT_INCLUDE_DIRS})
234
+ endif()
235
+ set_target_properties(${target_name} PROPERTIES COMPILE_FLAGS "--no-warnings")
236
+ endfunction()
237
+
238
+ function(multipers_configure_extension_backend module_name target_name)
239
+ if(module_name STREQUAL "_aida_interface" AND WIN32)
240
+ message(FATAL_ERROR "AIDA backend is not supported on Windows")
241
+ endif()
242
+
243
+ list(FIND MULTIPERS_BOOST_MODULES "${module_name}" uses_boost)
244
+ if(NOT uses_boost EQUAL -1)
245
+ target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
246
+ endif()
247
+
248
+ list(FIND MULTIPERS_GMP_MODULE "${module_name}" uses_gmp)
249
+ if(NOT uses_gmp EQUAL -1)
250
+ target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
251
+ endif()
252
+
253
+ if(module_name STREQUAL "_aida_interface")
254
+ target_link_libraries(${target_name} PRIVATE multipers_aida_static)
255
+ endif()
256
+
257
+ if(module_name STREQUAL "_rhomboid_tiling_interface")
258
+ if(NOT MSVC)
259
+ target_compile_options(
260
+ ${target_name}
261
+ PRIVATE
262
+ -fno-associative-math
263
+ -fno-unsafe-math-optimizations
264
+ )
265
+ endif()
266
+ if(TARGET multipers_rhomboid_tiling_static)
267
+ target_link_libraries(${target_name} PRIVATE multipers_rhomboid_tiling_static)
268
+ endif()
269
+ if(TARGET CGAL::CGAL)
270
+ target_link_libraries(${target_name} PRIVATE CGAL::CGAL)
271
+ endif()
272
+ if(TARGET CGAL::CGAL_Core)
273
+ target_link_libraries(${target_name} PRIVATE CGAL::CGAL_Core)
274
+ endif()
275
+ endif()
276
+
277
+ list(FIND MULTIPERS_OPENMP_MODULES "${module_name}" uses_openmp)
278
+ if(NOT uses_openmp EQUAL -1)
279
+ multipers_link_openmp(${target_name})
280
+ endif()
281
+
282
+ list(FIND MULTIPERS_TBB_MODULES "${module_name}" uses_tbb)
283
+ if(NOT uses_tbb EQUAL -1)
284
+ multipers_link_tbb(${target_name})
285
+ endif()
286
+ endfunction()
287
+
288
+ function(multipers_add_extension module_name)
289
+ string(REPLACE "." "/" module_path "${module_name}")
290
+ set(source_pyx_file "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx")
291
+ set(generated_pyx_file "${MULTIPERS_GENERATED_ROOT}/multipers/${module_path}.pyx")
292
+ set(pyx_template "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx.tp")
293
+ if(EXISTS "${pyx_template}")
294
+ set(pyx_file "${generated_pyx_file}")
295
+ elseif(EXISTS "${source_pyx_file}")
296
+ set(pyx_file "${source_pyx_file}")
297
+ else()
298
+ message(FATAL_ERROR "Missing Cython source/template: ${source_pyx_file}")
299
+ endif()
300
+
301
+ set(cpp_file "${CMAKE_BINARY_DIR}/cython/${module_path}.cpp")
302
+ set(dep_file "${cpp_file}.dep")
303
+ get_filename_component(cpp_dir "${cpp_file}" DIRECTORY)
304
+
305
+ add_custom_command(
306
+ OUTPUT "${cpp_file}"
307
+ COMMAND "${CMAKE_COMMAND}" -E make_directory "${cpp_dir}"
308
+ COMMAND "${Python3_EXECUTABLE}" -m cython ${MULTIPERS_CYTHON_COMMON_ARGS} -M "${pyx_file}" -o "${cpp_file}"
309
+ DEPENDS "${pyx_file}" ${MULTIPERS_GENERATED_FILES}
310
+ DEPFILE "${dep_file}"
311
+ WORKING_DIRECTORY "${CMAKE_BINARY_DIR}"
312
+ VERBATIM
313
+ )
314
+
315
+ string(REPLACE "." "_" target_name "multipers_${module_name}")
316
+ Python3_add_library(${target_name} MODULE WITH_SOABI "${cpp_file}")
317
+ add_dependencies(${target_name} multipers_tempita)
318
+ set_target_properties(${target_name} PROPERTIES PREFIX "")
319
+
320
+ target_include_directories(
321
+ ${target_name}
322
+ PRIVATE
323
+ ${MULTIPERS_GENERATED_INCLUDE_DIRS}
324
+ ${MULTIPERS_BASE_INCLUDE_DIRS}
325
+ )
326
+ multipers_apply_common_build_flags(${target_name})
327
+
328
+ list(FIND MULTIPERS_SHARED_CORE_MODULES "${module_name}" uses_shared_core)
329
+ if(NOT uses_shared_core EQUAL -1)
330
+ multipers_link_shared_core(${target_name})
331
+ endif()
332
+
333
+ multipers_configure_extension_include_dirs("${module_name}" ${target_name})
334
+ multipers_configure_extension_backend("${module_name}" ${target_name})
335
+
336
+ set(output_name "${module_name}")
337
+ set(package_dir "multipers")
338
+
339
+ set_target_properties(${target_name} PROPERTIES OUTPUT_NAME "${output_name}")
340
+ if(WIN32)
341
+ install(TARGETS ${target_name}
342
+ LIBRARY DESTINATION "${package_dir}"
343
+ RUNTIME DESTINATION "${package_dir}"
344
+ ARCHIVE DESTINATION "${package_dir}"
345
+ )
346
+
347
+ install(CODE "
348
+ message(STATUS \"Bundling runtime deps for: $<TARGET_FILE:${target_name}>\")
349
+ file(GET_RUNTIME_DEPENDENCIES
350
+ RESOLVED_DEPENDENCIES_VAR deps
351
+ UNRESOLVED_DEPENDENCIES_VAR unresolved
352
+ CONFLICTING_DEPENDENCIES_PREFIX conflict
353
+ MODULES \"$<TARGET_FILE:${target_name}>\"
354
+ DIRECTORIES
355
+ \"\$ENV{CONDA_PREFIX}/Library/bin\"
356
+ \"\$ENV{CONDA_PREFIX}/bin\"
357
+ POST_EXCLUDE_REGEXES
358
+ \".*[Ww]indows[/\\\\][Ss]ystem32[/\\\\].*\"
359
+ \"api-ms-win-.*\"
360
+ \"ext-ms-.*\"
361
+ )
362
+
363
+ foreach(dep IN LISTS deps)
364
+ file(INSTALL
365
+ DESTINATION \"\${CMAKE_INSTALL_PREFIX}/${package_dir}\"
366
+ TYPE SHARED_LIBRARY
367
+ FILES \"\${dep}\"
368
+ )
369
+ endforeach()
370
+
371
+ foreach(dep IN LISTS unresolved)
372
+ message(WARNING \"Unresolved dependency: \${dep}\")
373
+ endforeach()
374
+ ")
375
+ else()
376
+ install(TARGETS ${target_name}
377
+ LIBRARY DESTINATION "${package_dir}"
378
+ )
379
+ endif()
380
+ endfunction()
381
+
382
+ set(MULTIPERS_MODULES
383
+ simplex_tree_multi
384
+ io
385
+ function_rips
386
+ mma_structures
387
+ multiparameter_module_approximation
388
+ point_measure
389
+ grids
390
+ slicer
391
+ ops
392
+ _mpfree_interface
393
+ _aida_interface
394
+ _function_delaunay_interface
395
+ _multi_critical_interface
396
+ _rhomboid_tiling_interface
397
+ )
398
+
399
+ if(WIN32)
400
+ list(REMOVE_ITEM MULTIPERS_MODULES
401
+ _aida_interface
402
+ # _mpfree_interface
403
+ # _function_delaunay_interface
404
+ # _multi_critical_interface
405
+ )
406
+ endif()
407
+
408
+ foreach(module_name IN LISTS MULTIPERS_MODULES)
409
+ multipers_add_extension(${module_name})
410
+ endforeach()
@@ -0,0 +1,125 @@
1
+ include_guard(GLOBAL)
2
+
3
+ set(MULTIPERS_GENERATED_ROOT "${CMAKE_BINARY_DIR}/generated")
4
+ set(MULTIPERS_TEMPITA_CACHE_DIR "${CMAKE_BINARY_DIR}/tmp")
5
+
6
+ set(MULTIPERS_TEMPLATE_FILES
7
+ "${CMAKE_SOURCE_DIR}/multipers/filtrations.pxd.tp"
8
+ "${CMAKE_SOURCE_DIR}/multipers/filtration_conversions.pxd.tp"
9
+ "${CMAKE_SOURCE_DIR}/multipers/slicer.pxd.tp"
10
+ "${CMAKE_SOURCE_DIR}/multipers/mma_structures.pyx.tp"
11
+ "${CMAKE_SOURCE_DIR}/multipers/multiparameter_module_approximation.pyx.tp"
12
+ "${CMAKE_SOURCE_DIR}/multipers/simplex_tree_multi.pyx.tp"
13
+ "${CMAKE_SOURCE_DIR}/multipers/slicer.pyx.tp"
14
+ )
15
+
16
+ set(MULTIPERS_GENERATED_FILES
17
+ "${MULTIPERS_GENERATED_ROOT}/multipers/filtrations.pxd"
18
+ "${MULTIPERS_GENERATED_ROOT}/multipers/filtration_conversions.pxd"
19
+ "${MULTIPERS_GENERATED_ROOT}/multipers/slicer.pxd"
20
+ "${MULTIPERS_GENERATED_ROOT}/multipers/mma_structures.pyx"
21
+ "${MULTIPERS_GENERATED_ROOT}/multipers/multiparameter_module_approximation.pyx"
22
+ "${MULTIPERS_GENERATED_ROOT}/multipers/simplex_tree_multi.pyx"
23
+ "${MULTIPERS_GENERATED_ROOT}/multipers/slicer.pyx"
24
+ )
25
+
26
+ set(MULTIPERS_CORE_GENERATED_FILES
27
+ "${MULTIPERS_GENERATED_ROOT}/tools/core/filtrations_instantiations.inc"
28
+ "${MULTIPERS_GENERATED_ROOT}/tools/core/simplextree_instantiations.inc"
29
+ "${MULTIPERS_GENERATED_ROOT}/tools/core/slicer_instantiations.inc"
30
+ "${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/filtrations_extern_templates.h"
31
+ "${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/simplextree_multi_extern_templates.h"
32
+ "${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/slicer_extern_templates.h"
33
+ )
34
+
35
+ set(MULTIPERS_TEMPITA_GRID_GEN "${CMAKE_SOURCE_DIR}/tools/tempita_grid_gen.py")
36
+
37
+ execute_process(
38
+ COMMAND
39
+ "${Python3_EXECUTABLE}" "-c"
40
+ "import importlib.util, pathlib; spec = importlib.util.spec_from_file_location('multipers_user_options', pathlib.Path(r'${CMAKE_SOURCE_DIR}') / 'options.py'); mod = importlib.util.module_from_spec(spec); spec.loader.exec_module(mod); print('1' if 'Degree_rips_bifiltration' in getattr(mod, 'FILTRATION_CONTAINERS', ()) else '0')"
41
+ RESULT_VARIABLE MULTIPERS_FLAT_CONTAINER_DETECT_RESULT
42
+ OUTPUT_VARIABLE MULTIPERS_HAS_FLAT_CONTAINER_RAW
43
+ OUTPUT_STRIP_TRAILING_WHITESPACE
44
+ ERROR_VARIABLE MULTIPERS_FLAT_CONTAINER_DETECT_ERROR
45
+ )
46
+
47
+ if(NOT MULTIPERS_FLAT_CONTAINER_DETECT_RESULT EQUAL 0)
48
+ message(
49
+ FATAL_ERROR
50
+ "Failed to detect FILTRATION_CONTAINERS from options.py: ${MULTIPERS_FLAT_CONTAINER_DETECT_ERROR}"
51
+ )
52
+ endif()
53
+
54
+ set(MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER OFF)
55
+ if(MULTIPERS_HAS_FLAT_CONTAINER_RAW STREQUAL "1")
56
+ set(MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER ON)
57
+ endif()
58
+
59
+ message(
60
+ STATUS
61
+ "MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER=${MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER}"
62
+ )
63
+
64
+ option(
65
+ MULTIPERS_TEMPITA_GRID_VERBOSE
66
+ "Enable verbose Tempita grid generation logs"
67
+ OFF
68
+ )
69
+
70
+ if(MULTIPERS_TEMPITA_GRID_VERBOSE)
71
+ set(MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE "1")
72
+ else()
73
+ set(MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE "0")
74
+ endif()
75
+
76
+ add_custom_command(
77
+ OUTPUT ${MULTIPERS_GENERATED_FILES} ${MULTIPERS_CORE_GENERATED_FILES}
78
+ COMMAND "${CMAKE_COMMAND}" -E make_directory "${MULTIPERS_GENERATED_ROOT}"
79
+ COMMAND "${CMAKE_COMMAND}" -E make_directory "${MULTIPERS_TEMPITA_CACHE_DIR}"
80
+ COMMAND
81
+ "${CMAKE_COMMAND}" -E env
82
+ "MULTIPERS_TEMPITA_GRID_VERBOSE=${MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE}"
83
+ "MULTIPERS_TEMPITA_GRID_OUTPUT_ROOT=${MULTIPERS_GENERATED_ROOT}"
84
+ "MULTIPERS_TEMPITA_CACHE_DIR=${MULTIPERS_TEMPITA_CACHE_DIR}"
85
+ "${Python3_EXECUTABLE}" "${MULTIPERS_TEMPITA_GRID_GEN}"
86
+ COMMAND
87
+ "${CMAKE_COMMAND}" -E env
88
+ "MULTIPERS_TEMPITA_CACHE_DIR=${MULTIPERS_TEMPITA_CACHE_DIR}"
89
+ "${Python3_EXECUTABLE}" "${CMAKE_SOURCE_DIR}/tools/process_tempita.py"
90
+ --source-root "${CMAKE_SOURCE_DIR}"
91
+ --output-root "${MULTIPERS_GENERATED_ROOT}"
92
+ ${MULTIPERS_TEMPLATE_FILES}
93
+ DEPENDS
94
+ "${MULTIPERS_TEMPITA_GRID_GEN}"
95
+ "${CMAKE_SOURCE_DIR}/options.py"
96
+ "${CMAKE_SOURCE_DIR}/tools/codegen/_registry.py"
97
+ "${CMAKE_SOURCE_DIR}/tools/process_tempita.py"
98
+ ${MULTIPERS_TEMPLATE_FILES}
99
+ WORKING_DIRECTORY "${CMAKE_SOURCE_DIR}"
100
+ VERBATIM
101
+ )
102
+
103
+ add_custom_target(multipers_tempita DEPENDS ${MULTIPERS_GENERATED_FILES} ${MULTIPERS_CORE_GENERATED_FILES})
104
+
105
+ set(MULTIPERS_CYTHON_COMMON_ARGS
106
+ --cplus
107
+ --fast-fail
108
+ --directive language_level=3
109
+ --directive embedsignature=True
110
+ --directive embedsignature.format=python
111
+ --directive binding=True
112
+ --directive infer_types=True
113
+ --directive boundscheck=False
114
+ --directive wraparound=True
115
+ --directive iterable_coroutine=True
116
+ --directive annotation_typing=True
117
+ --directive emit_code_comments=True
118
+ --directive initializedcheck=False
119
+ --directive cdivision=True
120
+ --directive profile=False
121
+ -I "${MULTIPERS_GENERATED_ROOT}"
122
+ -I "${MULTIPERS_GENERATED_ROOT}/multipers"
123
+ -I "${CMAKE_SOURCE_DIR}"
124
+ -I "${CMAKE_SOURCE_DIR}/multipers"
125
+ )