multipers 2.5.0b2__tar.gz → 2.5.0b4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- multipers-2.5.0b4/CMakeLists.txt +28 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/PKG-INFO +1 -1
- {multipers-2.5.0b2 → multipers-2.5.0b4}/THIRD_PARTY_NOTICES.md +12 -0
- multipers-2.5.0b4/_tempita_grid_gen.py +6 -0
- multipers-2.5.0b4/cmake/MultipersBuild.cmake +410 -0
- multipers-2.5.0b4/cmake/MultipersCodegen.cmake +125 -0
- multipers-2.5.0b4/cmake/MultipersDependencies.cmake +109 -0
- multipers-2.5.0b4/cmake/MultipersInstall.cmake +31 -0
- multipers-2.5.0b4/ext/AIDA/CITATION.cff +13 -0
- multipers-2.5.0b4/ext/AIDA/README.md +201 -0
- multipers-2.5.0b4/ext/AIDA/visualise_pointset.py +49 -0
- multipers-2.5.0b4/ext/AIDA/visualise_pres.py +129 -0
- multipers-2.5.0b4/ext/AIDA/visualise_reso.py +383 -0
- multipers-2.5.0b4/ext/Persistence-Algebra/CITATION.cff +13 -0
- multipers-2.5.0b4/ext/Persistence-Algebra/README.md +1 -0
- multipers-2.5.0b4/ext/Persistence-Algebra/visualise_reso.py +381 -0
- multipers-2.5.0b4/ext/function_delaunay/README.md +95 -0
- multipers-2.5.0b4/ext/function_delaunay/alpha_from_gudhi.py +69 -0
- multipers-2.5.0b4/ext/function_delaunay/misc/compare_simplices.py +63 -0
- multipers-2.5.0b4/ext/function_delaunay/misc/generate_summaries.py +120 -0
- multipers-2.5.0b4/ext/function_delaunay/misc/points_on_cube.py +22 -0
- multipers-2.5.0b4/ext/function_delaunay/misc/points_on_sphere.py +29 -0
- multipers-2.5.0b4/ext/function_delaunay/misc/points_on_torus.py +34 -0
- multipers-2.5.0b4/ext/function_delaunay/phat/README.md +148 -0
- multipers-2.5.0b4/ext/mpfree/README.md +69 -0
- multipers-2.5.0b4/ext/multi_chunk/README.md +57 -0
- multipers-2.5.0b4/ext/multi_critical/README.md +83 -0
- multipers-2.5.0b4/ext/phat/COPYING +674 -0
- multipers-2.5.0b4/ext/phat/COPYING.LESSER +165 -0
- multipers-2.5.0b4/ext/phat/INSTALL +1 -0
- multipers-2.5.0b4/ext/phat/README.md +147 -0
- multipers-2.5.0b4/ext/phat/addons/alpha_3.cpp +448 -0
- multipers-2.5.0b4/ext/phat/addons/rips.cpp +91 -0
- multipers-2.5.0b4/ext/phat/examples/single_triangle.dat +12 -0
- multipers-2.5.0b4/ext/phat/examples/single_triangle_persistence_pairs.dat +4 -0
- multipers-2.5.0b4/ext/phat/include/phat/algorithms/chunk_reduction.h +226 -0
- multipers-2.5.0b4/ext/phat/include/phat/algorithms/row_reduction.h +56 -0
- multipers-2.5.0b4/ext/phat/include/phat/algorithms/spectral_sequence_reduction.h +80 -0
- multipers-2.5.0b4/ext/phat/include/phat/algorithms/standard_reduction.h +46 -0
- multipers-2.5.0b4/ext/phat/include/phat/algorithms/twist_reduction.h +51 -0
- multipers-2.5.0b4/ext/phat/include/phat/boundary_matrix.h +347 -0
- multipers-2.5.0b4/ext/phat/include/phat/compute_persistence_pairs.h +61 -0
- multipers-2.5.0b4/ext/phat/include/phat/helpers/dualize.h +74 -0
- multipers-2.5.0b4/ext/phat/include/phat/helpers/misc.h +75 -0
- multipers-2.5.0b4/ext/phat/include/phat/helpers/thread_local_storage.h +52 -0
- multipers-2.5.0b4/ext/phat/include/phat/persistence_pairs.h +155 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/abstract_pivot_column.h +102 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/bit_tree_pivot_column.h +165 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/full_pivot_column.h +100 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/heap_pivot_column.h +126 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/sparse_pivot_column.h +79 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/vector_heap.h +170 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/vector_list.h +101 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/vector_set.h +99 -0
- multipers-2.5.0b4/ext/phat/include/phat/representations/vector_vector.h +107 -0
- multipers-2.5.0b4/ext/phat/python/MANIFEST.in +1 -0
- multipers-2.5.0b4/ext/phat/python/README.rst +142 -0
- multipers-2.5.0b4/ext/phat/python/_phat.cpp +291 -0
- multipers-2.5.0b4/ext/phat/python/phat.py +321 -0
- multipers-2.5.0b4/ext/phat/python/setup.cfg +5 -0
- multipers-2.5.0b4/ext/phat/python/src/self_test.py +166 -0
- multipers-2.5.0b4/ext/phat/python/src/simple_example.py +55 -0
- multipers-2.5.0b4/ext/phat/setup.py +73 -0
- multipers-2.5.0b4/ext/phat/src/benchmark.cpp +348 -0
- multipers-2.5.0b4/ext/phat/src/convert.cpp +85 -0
- multipers-2.5.0b4/ext/phat/src/info.cpp +77 -0
- multipers-2.5.0b4/ext/phat/src/phat.cpp +190 -0
- multipers-2.5.0b4/ext/phat/src/self_test.cpp +225 -0
- multipers-2.5.0b4/ext/phat/src/simple_example.cpp +127 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/README.md +117 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/catch2/catch.hpp +14367 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/bifiltration_cell.h +47 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/cell_with_radius.h +18 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/combinatorial_bifiltration_cell.h +49 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_2.h +58 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_3.h +60 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/firep.h +66 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/main.cpp +267 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid.cpp +92 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid.h +85 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling.h +176 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling_impl.h +825 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_with_radius.h +18 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/tests_2d.cpp +366 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/tests_3d.cpp +796 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/testutils.h +29 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/types.h +15 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/utils.cpp +78 -0
- multipers-2.5.0b4/ext/rhomboidtiling_newer_cgal_version/src/utils.h +60 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_function_delaunay_interface.pyx +38 -16
- multipers-2.5.0b4/multipers/_mpfree_interface.pyx +96 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_multi_critical_interface.pyx +81 -9
- multipers-2.5.0b4/multipers/_rhomboid_tiling_interface.pyx +94 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_signed_measure_meta.py +2 -28
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/_slicer_meta.py +1 -1
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/array_api/numpy.py +4 -1
- multipers-2.5.0b4/multipers/distances.py +202 -0
- multipers-2.5.0b4/multipers/ext_interface/contiguous_slicer_bridge.hpp +83 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/function_delaunay_interface.hpp +30 -1
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/mpfree_interface.hpp +67 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ext_interface/multi_critical_interface.hpp +65 -0
- multipers-2.5.0b4/multipers/ext_interface/rhomboid_tiling_interface.hpp +337 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/filtration_conversions.pxd.tp +6 -1
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/filtrations.pxd.tp +5 -1
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/grids.pyx +3 -3
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/Persistence_slices_interface.h +13 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/Simplex_tree_multi_interface.h +4 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Degree_rips_bifiltration.h +43 -40
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Dynamic_multi_parameter_filtration.h +80 -79
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Matrix.h +169 -200
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_filtration/Multi_parameter_generator.h +17 -17
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_filtration/multi_filtration_conversions.h +40 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_parameter_filtration.h +44 -42
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Line.h +62 -29
- multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/Module.h +322 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_homology.h +31 -25
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Multi_persistence/Point.h +7 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/Summand.h +330 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/module_helpers.h +473 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Multi_persistence/summand_helpers.h +208 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_bit_tree_column.h +145 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_column_interface.h +833 -0
- multipers-2.5.0b4/multipers/gudhi/gudhi/Persistence_matrix/columns/phat_vector_column.h +107 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/Slicer.h +51 -41
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/persistence_matrix_options.h +5 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/simple_mdspan.h +5 -2
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/vineyard_base.h +126 -20
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/io.pyx +68 -9
- multipers-2.5.0b4/multipers/mma_structures.pxd +113 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/mma_structures.pyx.tp +205 -200
- multipers-2.5.0b4/multipers/multiparameter_module_approximation/approximation.h +406 -0
- multipers-2.5.0b4/multipers/multiparameter_module_approximation/utilities.h +428 -0
- multipers-2.5.0b2/multipers/multiparameter_module_approximation.pyx → multipers-2.5.0b4/multipers/multiparameter_module_approximation.pyx.tp +92 -28
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/simplex_tree_multi.pyx.tp +10 -4
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/slicer.pxd.tp +15 -6
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/slicer.pyx.tp +101 -3
- multipers-2.5.0b4/options.py +81 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/pyproject.toml +88 -71
- multipers-2.5.0b4/tools/codegen/__init__.py +1 -0
- multipers-2.5.0b4/tools/codegen/_registry.py +40 -0
- multipers-2.5.0b4/tools/core/filtrations_core.cc +11 -0
- multipers-2.5.0b4/tools/core/simplextree_core.cc +12 -0
- multipers-2.5.0b4/tools/core/slicer_core.cc +12 -0
- multipers-2.5.0b4/tools/process_tempita.py +60 -0
- multipers-2.5.0b4/tools/tempita_grid_gen.py +742 -0
- multipers-2.5.0b2/.clang-format +0 -90
- multipers-2.5.0b2/CMakeLists.txt +0 -370
- multipers-2.5.0b2/MANIFEST.in +0 -11
- multipers-2.5.0b2/_tempita_grid_gen.py +0 -306
- multipers-2.5.0b2/build_wheel_linux.sh +0 -12
- multipers-2.5.0b2/build_wheel_mac.sh +0 -12
- multipers-2.5.0b2/environment.yml +0 -37
- multipers-2.5.0b2/ext/AIDA/CMakeLists.txt +0 -78
- multipers-2.5.0b2/ext/Persistence-Algebra/CMakeLists.txt +0 -73
- multipers-2.5.0b2/ext/Persistence-Algebra/tests/dense_matrix_test.cpp +0 -67
- multipers-2.5.0b2/ext/Persistence-Algebra/tests/graded_matrix_test.cpp +0 -364
- multipers-2.5.0b2/ext/Persistence-Algebra/tests/hom_space_test.cpp +0 -37
- multipers-2.5.0b2/ext/Persistence-Algebra/tests/sparse_matrix_test.cpp +0 -207
- multipers-2.5.0b2/ext/function_delaunay/CMakeLists.txt +0 -114
- multipers-2.5.0b2/ext/mpfree/CMakeLists.txt +0 -51
- multipers-2.5.0b2/ext/multi_chunk/CMakeLists.txt +0 -52
- multipers-2.5.0b2/ext/multi_critical/CMakeLists.txt +0 -50
- multipers-2.5.0b2/multipers/_mpfree_interface.pyx +0 -142
- multipers-2.5.0b2/multipers/distances.py +0 -202
- multipers-2.5.0b2/multipers/mma_structures.pxd +0 -135
- multipers-2.5.0b2/multipers/multiparameter_module_approximation/approximation.h +0 -2585
- multipers-2.5.0b2/multipers/multiparameter_module_approximation/utilities.h +0 -428
- multipers-2.5.0b2/tools/process_tempita.py +0 -30
- {multipers-2.5.0b2 → multipers-2.5.0b4}/CITATION.cff +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/LICENSE +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/README.md +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/compute.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/LICENSE +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/aida.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/birth_death.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/brute_force_mpm_decomposition.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/generate_decompositions.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/aida_interface.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/config.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/option_parser.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/include/types.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/making_examples.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/minimize_pres.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/mpfree_clone.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/presentation_to_quiver.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/presentation_to_quiver_new.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/resolution.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_decompose.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_decompose.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_functions.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_functions.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_helpers.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_helpers.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/aida_interface.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/block.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/block.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/config.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/src/option_parser.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/AIDA/vectorspace_decompositions.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/LICENSE +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/analyse_ind.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/birth_death.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/cut_module.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/hom.cpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/bitset_algebra.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/column_types.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/dense_matrix.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/draw_hf.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/general.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/graded_linalg.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/graded_matrix.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/grid_scheduler.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/homomorphisms.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/matrix_base.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/modules.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/orders_and_graphs.hpp +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/ext/Persistence-Algebra/include/grlina/r2graded_matrix.hpp +0 -0
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- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/reader_utils.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/gudhi/slicer_helpers.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/tmp_h0_pers/mma_interface_h0.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/gudhi/tmp_h0_pers/naive_merge_tree.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/logs.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/__init__.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/accuracies.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/filtered_complex.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/invariants_with_persistable.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/kernels.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/mma.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/one.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/signed_measures.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/sliced_wasserstein.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ml/tools.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/diff_helpers.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/euler_characteristic.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/function_rips.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/hilbert_function.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/persistence_slices.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multi_parameter_rank_invariant/rank_invariant.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_edge_collapse.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_module_approximation/debug.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/multiparameter_module_approximation/format_python-cpp.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/ops.pyx +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/pickle.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/plots.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/point_measure.pyx +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/simplex_tree_multi.pxd +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tensor/tensor.h +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tensor.pxd +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/test.pyx +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers/tests/__init__.py +0 -0
- {multipers-2.5.0b2 → multipers-2.5.0b4}/multipers_old.py +0 -0
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cmake_minimum_required(VERSION 3.24)
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project(multipers LANGUAGES C CXX)
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if(POLICY CMP0167)
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cmake_policy(SET CMP0167 NEW)
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endif()
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set(CMAKE_CXX_STANDARD 20)
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set(CMAKE_CXX_STANDARD_REQUIRED ON)
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set(CMAKE_POSITION_INDEPENDENT_CODE ON)
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set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
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set(CMAKE_COLOR_DIAGNOSTICS ON)
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add_compile_options(
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$<$<COMPILE_LANGUAGE:C>:-fdiagnostics-color=always>
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$<$<COMPILE_LANGUAGE:CXX>:-fdiagnostics-color=always>
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)
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endif()
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endif()
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersDependencies.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersCodegen.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersBuild.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersInstall.cmake")
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Metadata-Version: 2.4
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Name: multipers
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Version: 2.5.
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Version: 2.5.0b4
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Summary: Multiparameter Topological Persistence for Machine Learning
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Keywords: TDA,Persistence,Multiparameter,sklearn,autodiff
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Author-Email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
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@@ -24,6 +24,12 @@ As a result, distributed `multipers` artifacts built with these components are l
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- Commit used in this workspace: `a481f8d90af7a97795c467d81fb3db2cf952a58e`
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- License: GPL-3.0-or-later (see upstream `COPYING`)
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- `rhomboidtiling_newer_cgal_version`
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- Upstream: https://github.com/DavidLapous/rhomboidtiling_newer_cgal_version
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- Header/source path used at build time: `ext/rhomboidtiling_newer_cgal_version`
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- Commit used in this workspace: `c414cdc60f30196ffd3ce5cda1817368655905f0`
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- License: MIT (see `ext/rhomboidtiling_newer_cgal_version/LICENSE.md`)
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- `mpfree`
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- Upstream: https://bitbucket.org/mkerber/mpfree/
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- Header source path used at build time: `ext/mpfree`
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- Commit used in this workspace: `d686f7efe623169f00951c376949b8bb30448eaf`
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- License: LGPL-3.0-or-later (see upstream `COPYING.LESSER`)
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- `PHAT`
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- Upstream: https://github.com/xoltar/phat
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- Header source path used at build time: `ext/phat/include`
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- Commit used in this workspace: `872ca92b33ebe92dff2542cbdee6768e575e80aa`
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- License: LGPL-3.0-or-later (see `ext/phat/COPYING.LESSER`)
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## Notes
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- Build-time include paths for these dependencies are configured in `CMakeLists.txt`.
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@@ -0,0 +1,410 @@
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include_guard(GLOBAL)
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function(multipers_apply_common_build_flags target_name)
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target_compile_definitions(
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${target_name}
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PRIVATE
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NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION
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GUDHI_USE_TBB
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WITH_TBB=ON
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)
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if(WIN32)
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target_compile_definitions(
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${target_name}
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PRIVATE
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MULTIPERS_DISABLE_MPFREE_INTERFACE=1
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MULTIPERS_DISABLE_FUNCTION_DELAUNAY_INTERFACE=1
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MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
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MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
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)
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endif()
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if(NOT MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER)
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target_compile_definitions(
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${target_name}
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PRIVATE
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MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
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)
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endif()
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if(NOT CGAL_FOUND)
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target_compile_definitions(
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${target_name}
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PRIVATE
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MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
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)
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endif()
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if(MSVC)
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target_compile_options(${target_name} PRIVATE /O2 /DNDEBUG /W1 /WX- /openmp)
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else()
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target_compile_options(
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${target_name}
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PRIVATE
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-O3
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-fassociative-math
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-funsafe-math-optimizations
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-DNDEBUG
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-Wall
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-Wextra
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-Wno-assume
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)
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endif()
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endfunction()
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function(multipers_link_openmp target_name)
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target_link_libraries(${target_name} PRIVATE OpenMP::OpenMP_CXX)
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endfunction()
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function(multipers_link_tbb target_name)
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if(TARGET TBB::tbb)
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target_link_libraries(${target_name} PRIVATE TBB::tbb)
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elseif(TARGET TBB::tbb_static)
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target_link_libraries(${target_name} PRIVATE TBB::tbb_static)
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else()
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message(FATAL_ERROR "TBB target not found")
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endif()
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endfunction()
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set(MULTIPERS_SHARED_CORE_MODULES
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simplex_tree_multi
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slicer
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mma_structures
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multiparameter_module_approximation
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_mpfree_interface
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_function_delaunay_interface
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_multi_critical_interface
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_rhomboid_tiling_interface
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)
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set(MULTIPERS_BOOST_MODULES
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_aida_interface
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_mpfree_interface
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_multi_critical_interface
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_function_delaunay_interface
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)
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set(MULTIPERS_GMP_MODULE
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_aida_interface
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_mpfree_interface
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_multi_critical_interface
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_function_delaunay_interface
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_rhomboid_tiling_interface
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)
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set(MULTIPERS_GMP_MODULES ${MULTIPERS_GMP_MODULE})
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set(MULTIPERS_OPENMP_MODULES
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_aida_interface
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_mpfree_interface
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_multi_critical_interface
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_function_delaunay_interface
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)
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set(MULTIPERS_TBB_MODULES
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simplex_tree_multi
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function_rips
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mma_structures
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multiparameter_module_approximation
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point_measure
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grids
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slicer
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_mpfree_interface
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_function_delaunay_interface
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_multi_critical_interface
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_rhomboid_tiling_interface
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)
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set(MULTIPERS_MODULE_INCLUDE_DIR_MAP
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_aida_interface MULTIPERS_AIDA_INCLUDE_DIRS
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_mpfree_interface MULTIPERS_MPFREE_INCLUDE_DIRS
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_multi_critical_interface MULTIPERS_MULTI_CRITICAL_INCLUDE_DIRS
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_function_delaunay_interface MULTIPERS_FUNCTION_DELAUNAY_INCLUDE_DIRS
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_rhomboid_tiling_interface MULTIPERS_RHOMBOID_TILING_INCLUDE_DIRS
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)
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+
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set(MULTIPERS_FORKED_PHAT_MODULES
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_aida_interface
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_mpfree_interface
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_multi_critical_interface
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_function_delaunay_interface
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)
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+
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set(MULTIPERS_GENERATED_INCLUDE_DIRS
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"${MULTIPERS_GENERATED_ROOT}/multipers"
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"${MULTIPERS_GENERATED_ROOT}/multipers/gudhi"
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"${MULTIPERS_GENERATED_ROOT}/tools/core"
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)
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function(multipers_add_core_object_library target_name source_file)
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add_library(${target_name} OBJECT "${source_file}")
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add_dependencies(${target_name} multipers_tempita ${ARGN})
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target_include_directories(
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${target_name}
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PRIVATE
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146
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+
${MULTIPERS_GENERATED_INCLUDE_DIRS}
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147
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+
${MULTIPERS_BASE_INCLUDE_DIRS}
|
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+
${MULTIPERS_PHAT_INCLUDE_DIRS}
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)
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multipers_apply_common_build_flags(${target_name})
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+
endfunction()
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+
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multipers_add_core_object_library(
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multipers_core_filtrations_obj
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"${CMAKE_SOURCE_DIR}/tools/core/filtrations_core.cc"
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+
)
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+
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+
multipers_add_core_object_library(
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multipers_core_simplextree_obj
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"${CMAKE_SOURCE_DIR}/tools/core/simplextree_core.cc"
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+
multipers_core_filtrations_obj
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+
)
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+
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+
multipers_add_core_object_library(
|
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multipers_core_slicer_obj
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"${CMAKE_SOURCE_DIR}/tools/core/slicer_core.cc"
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+
multipers_core_filtrations_obj
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)
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add_library(
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multipers_core_shared
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SHARED
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$<TARGET_OBJECTS:multipers_core_filtrations_obj>
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$<TARGET_OBJECTS:multipers_core_simplextree_obj>
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$<TARGET_OBJECTS:multipers_core_slicer_obj>
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)
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add_dependencies(multipers_core_shared multipers_tempita)
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multipers_link_tbb(multipers_core_shared)
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+
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set(MULTIPERS_LOCAL_RPATH "")
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if(APPLE)
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set(MULTIPERS_LOCAL_RPATH "@loader_path")
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elseif(UNIX)
|
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set(MULTIPERS_LOCAL_RPATH "$ORIGIN")
|
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endif()
|
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186
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+
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set_target_properties(multipers_core_shared PROPERTIES OUTPUT_NAME "multipers_core")
|
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|
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if(WIN32)
|
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set_target_properties(multipers_core_shared PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS ON)
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endif()
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if(MULTIPERS_LOCAL_RPATH)
|
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set_target_properties(
|
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multipers_core_shared
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|
194
|
+
PROPERTIES
|
|
195
|
+
BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}"
|
|
196
|
+
INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}"
|
|
197
|
+
)
|
|
198
|
+
endif()
|
|
199
|
+
if(APPLE)
|
|
200
|
+
set_target_properties(
|
|
201
|
+
multipers_core_shared
|
|
202
|
+
PROPERTIES
|
|
203
|
+
INSTALL_NAME_DIR "@rpath"
|
|
204
|
+
SUFFIX ".so"
|
|
205
|
+
)
|
|
206
|
+
endif()
|
|
207
|
+
|
|
208
|
+
function(multipers_link_shared_core target_name)
|
|
209
|
+
target_link_libraries(${target_name} PRIVATE multipers_core_shared)
|
|
210
|
+
if(MULTIPERS_LOCAL_RPATH)
|
|
211
|
+
set_property(TARGET ${target_name} APPEND PROPERTY BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}")
|
|
212
|
+
set_property(TARGET ${target_name} APPEND PROPERTY INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}")
|
|
213
|
+
endif()
|
|
214
|
+
endfunction()
|
|
215
|
+
|
|
216
|
+
function(multipers_configure_extension_include_dirs module_name target_name)
|
|
217
|
+
list(LENGTH MULTIPERS_MODULE_INCLUDE_DIR_MAP include_dir_map_length)
|
|
218
|
+
if(include_dir_map_length GREATER 1)
|
|
219
|
+
math(EXPR include_dir_map_last "${include_dir_map_length} - 2")
|
|
220
|
+
foreach(i RANGE 0 ${include_dir_map_last} 2)
|
|
221
|
+
math(EXPR j "${i} + 1")
|
|
222
|
+
list(GET MULTIPERS_MODULE_INCLUDE_DIR_MAP ${i} include_module)
|
|
223
|
+
list(GET MULTIPERS_MODULE_INCLUDE_DIR_MAP ${j} include_var)
|
|
224
|
+
if("${module_name}" STREQUAL "${include_module}")
|
|
225
|
+
target_include_directories(${target_name} PRIVATE ${${include_var}})
|
|
226
|
+
break()
|
|
227
|
+
endif()
|
|
228
|
+
endforeach()
|
|
229
|
+
endif()
|
|
230
|
+
|
|
231
|
+
list(FIND MULTIPERS_FORKED_PHAT_MODULES "${module_name}" uses_forked_phat)
|
|
232
|
+
if(uses_forked_phat EQUAL -1)
|
|
233
|
+
target_include_directories(${target_name} BEFORE PRIVATE ${MULTIPERS_PHAT_INCLUDE_DIRS})
|
|
234
|
+
endif()
|
|
235
|
+
set_target_properties(${target_name} PROPERTIES COMPILE_FLAGS "--no-warnings")
|
|
236
|
+
endfunction()
|
|
237
|
+
|
|
238
|
+
function(multipers_configure_extension_backend module_name target_name)
|
|
239
|
+
if(module_name STREQUAL "_aida_interface" AND WIN32)
|
|
240
|
+
message(FATAL_ERROR "AIDA backend is not supported on Windows")
|
|
241
|
+
endif()
|
|
242
|
+
|
|
243
|
+
list(FIND MULTIPERS_BOOST_MODULES "${module_name}" uses_boost)
|
|
244
|
+
if(NOT uses_boost EQUAL -1)
|
|
245
|
+
target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
|
|
246
|
+
endif()
|
|
247
|
+
|
|
248
|
+
list(FIND MULTIPERS_GMP_MODULE "${module_name}" uses_gmp)
|
|
249
|
+
if(NOT uses_gmp EQUAL -1)
|
|
250
|
+
target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
|
|
251
|
+
endif()
|
|
252
|
+
|
|
253
|
+
if(module_name STREQUAL "_aida_interface")
|
|
254
|
+
target_link_libraries(${target_name} PRIVATE multipers_aida_static)
|
|
255
|
+
endif()
|
|
256
|
+
|
|
257
|
+
if(module_name STREQUAL "_rhomboid_tiling_interface")
|
|
258
|
+
if(NOT MSVC)
|
|
259
|
+
target_compile_options(
|
|
260
|
+
${target_name}
|
|
261
|
+
PRIVATE
|
|
262
|
+
-fno-associative-math
|
|
263
|
+
-fno-unsafe-math-optimizations
|
|
264
|
+
)
|
|
265
|
+
endif()
|
|
266
|
+
if(TARGET multipers_rhomboid_tiling_static)
|
|
267
|
+
target_link_libraries(${target_name} PRIVATE multipers_rhomboid_tiling_static)
|
|
268
|
+
endif()
|
|
269
|
+
if(TARGET CGAL::CGAL)
|
|
270
|
+
target_link_libraries(${target_name} PRIVATE CGAL::CGAL)
|
|
271
|
+
endif()
|
|
272
|
+
if(TARGET CGAL::CGAL_Core)
|
|
273
|
+
target_link_libraries(${target_name} PRIVATE CGAL::CGAL_Core)
|
|
274
|
+
endif()
|
|
275
|
+
endif()
|
|
276
|
+
|
|
277
|
+
list(FIND MULTIPERS_OPENMP_MODULES "${module_name}" uses_openmp)
|
|
278
|
+
if(NOT uses_openmp EQUAL -1)
|
|
279
|
+
multipers_link_openmp(${target_name})
|
|
280
|
+
endif()
|
|
281
|
+
|
|
282
|
+
list(FIND MULTIPERS_TBB_MODULES "${module_name}" uses_tbb)
|
|
283
|
+
if(NOT uses_tbb EQUAL -1)
|
|
284
|
+
multipers_link_tbb(${target_name})
|
|
285
|
+
endif()
|
|
286
|
+
endfunction()
|
|
287
|
+
|
|
288
|
+
function(multipers_add_extension module_name)
|
|
289
|
+
string(REPLACE "." "/" module_path "${module_name}")
|
|
290
|
+
set(source_pyx_file "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx")
|
|
291
|
+
set(generated_pyx_file "${MULTIPERS_GENERATED_ROOT}/multipers/${module_path}.pyx")
|
|
292
|
+
set(pyx_template "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx.tp")
|
|
293
|
+
if(EXISTS "${pyx_template}")
|
|
294
|
+
set(pyx_file "${generated_pyx_file}")
|
|
295
|
+
elseif(EXISTS "${source_pyx_file}")
|
|
296
|
+
set(pyx_file "${source_pyx_file}")
|
|
297
|
+
else()
|
|
298
|
+
message(FATAL_ERROR "Missing Cython source/template: ${source_pyx_file}")
|
|
299
|
+
endif()
|
|
300
|
+
|
|
301
|
+
set(cpp_file "${CMAKE_BINARY_DIR}/cython/${module_path}.cpp")
|
|
302
|
+
set(dep_file "${cpp_file}.dep")
|
|
303
|
+
get_filename_component(cpp_dir "${cpp_file}" DIRECTORY)
|
|
304
|
+
|
|
305
|
+
add_custom_command(
|
|
306
|
+
OUTPUT "${cpp_file}"
|
|
307
|
+
COMMAND "${CMAKE_COMMAND}" -E make_directory "${cpp_dir}"
|
|
308
|
+
COMMAND "${Python3_EXECUTABLE}" -m cython ${MULTIPERS_CYTHON_COMMON_ARGS} -M "${pyx_file}" -o "${cpp_file}"
|
|
309
|
+
DEPENDS "${pyx_file}" ${MULTIPERS_GENERATED_FILES}
|
|
310
|
+
DEPFILE "${dep_file}"
|
|
311
|
+
WORKING_DIRECTORY "${CMAKE_BINARY_DIR}"
|
|
312
|
+
VERBATIM
|
|
313
|
+
)
|
|
314
|
+
|
|
315
|
+
string(REPLACE "." "_" target_name "multipers_${module_name}")
|
|
316
|
+
Python3_add_library(${target_name} MODULE WITH_SOABI "${cpp_file}")
|
|
317
|
+
add_dependencies(${target_name} multipers_tempita)
|
|
318
|
+
set_target_properties(${target_name} PROPERTIES PREFIX "")
|
|
319
|
+
|
|
320
|
+
target_include_directories(
|
|
321
|
+
${target_name}
|
|
322
|
+
PRIVATE
|
|
323
|
+
${MULTIPERS_GENERATED_INCLUDE_DIRS}
|
|
324
|
+
${MULTIPERS_BASE_INCLUDE_DIRS}
|
|
325
|
+
)
|
|
326
|
+
multipers_apply_common_build_flags(${target_name})
|
|
327
|
+
|
|
328
|
+
list(FIND MULTIPERS_SHARED_CORE_MODULES "${module_name}" uses_shared_core)
|
|
329
|
+
if(NOT uses_shared_core EQUAL -1)
|
|
330
|
+
multipers_link_shared_core(${target_name})
|
|
331
|
+
endif()
|
|
332
|
+
|
|
333
|
+
multipers_configure_extension_include_dirs("${module_name}" ${target_name})
|
|
334
|
+
multipers_configure_extension_backend("${module_name}" ${target_name})
|
|
335
|
+
|
|
336
|
+
set(output_name "${module_name}")
|
|
337
|
+
set(package_dir "multipers")
|
|
338
|
+
|
|
339
|
+
set_target_properties(${target_name} PROPERTIES OUTPUT_NAME "${output_name}")
|
|
340
|
+
if(WIN32)
|
|
341
|
+
install(TARGETS ${target_name}
|
|
342
|
+
LIBRARY DESTINATION "${package_dir}"
|
|
343
|
+
RUNTIME DESTINATION "${package_dir}"
|
|
344
|
+
ARCHIVE DESTINATION "${package_dir}"
|
|
345
|
+
)
|
|
346
|
+
|
|
347
|
+
install(CODE "
|
|
348
|
+
message(STATUS \"Bundling runtime deps for: $<TARGET_FILE:${target_name}>\")
|
|
349
|
+
file(GET_RUNTIME_DEPENDENCIES
|
|
350
|
+
RESOLVED_DEPENDENCIES_VAR deps
|
|
351
|
+
UNRESOLVED_DEPENDENCIES_VAR unresolved
|
|
352
|
+
CONFLICTING_DEPENDENCIES_PREFIX conflict
|
|
353
|
+
MODULES \"$<TARGET_FILE:${target_name}>\"
|
|
354
|
+
DIRECTORIES
|
|
355
|
+
\"\$ENV{CONDA_PREFIX}/Library/bin\"
|
|
356
|
+
\"\$ENV{CONDA_PREFIX}/bin\"
|
|
357
|
+
POST_EXCLUDE_REGEXES
|
|
358
|
+
\".*[Ww]indows[/\\\\][Ss]ystem32[/\\\\].*\"
|
|
359
|
+
\"api-ms-win-.*\"
|
|
360
|
+
\"ext-ms-.*\"
|
|
361
|
+
)
|
|
362
|
+
|
|
363
|
+
foreach(dep IN LISTS deps)
|
|
364
|
+
file(INSTALL
|
|
365
|
+
DESTINATION \"\${CMAKE_INSTALL_PREFIX}/${package_dir}\"
|
|
366
|
+
TYPE SHARED_LIBRARY
|
|
367
|
+
FILES \"\${dep}\"
|
|
368
|
+
)
|
|
369
|
+
endforeach()
|
|
370
|
+
|
|
371
|
+
foreach(dep IN LISTS unresolved)
|
|
372
|
+
message(WARNING \"Unresolved dependency: \${dep}\")
|
|
373
|
+
endforeach()
|
|
374
|
+
")
|
|
375
|
+
else()
|
|
376
|
+
install(TARGETS ${target_name}
|
|
377
|
+
LIBRARY DESTINATION "${package_dir}"
|
|
378
|
+
)
|
|
379
|
+
endif()
|
|
380
|
+
endfunction()
|
|
381
|
+
|
|
382
|
+
set(MULTIPERS_MODULES
|
|
383
|
+
simplex_tree_multi
|
|
384
|
+
io
|
|
385
|
+
function_rips
|
|
386
|
+
mma_structures
|
|
387
|
+
multiparameter_module_approximation
|
|
388
|
+
point_measure
|
|
389
|
+
grids
|
|
390
|
+
slicer
|
|
391
|
+
ops
|
|
392
|
+
_mpfree_interface
|
|
393
|
+
_aida_interface
|
|
394
|
+
_function_delaunay_interface
|
|
395
|
+
_multi_critical_interface
|
|
396
|
+
_rhomboid_tiling_interface
|
|
397
|
+
)
|
|
398
|
+
|
|
399
|
+
if(WIN32)
|
|
400
|
+
list(REMOVE_ITEM MULTIPERS_MODULES
|
|
401
|
+
_aida_interface
|
|
402
|
+
# _mpfree_interface
|
|
403
|
+
# _function_delaunay_interface
|
|
404
|
+
# _multi_critical_interface
|
|
405
|
+
)
|
|
406
|
+
endif()
|
|
407
|
+
|
|
408
|
+
foreach(module_name IN LISTS MULTIPERS_MODULES)
|
|
409
|
+
multipers_add_extension(${module_name})
|
|
410
|
+
endforeach()
|
|
@@ -0,0 +1,125 @@
|
|
|
1
|
+
include_guard(GLOBAL)
|
|
2
|
+
|
|
3
|
+
set(MULTIPERS_GENERATED_ROOT "${CMAKE_BINARY_DIR}/generated")
|
|
4
|
+
set(MULTIPERS_TEMPITA_CACHE_DIR "${CMAKE_BINARY_DIR}/tmp")
|
|
5
|
+
|
|
6
|
+
set(MULTIPERS_TEMPLATE_FILES
|
|
7
|
+
"${CMAKE_SOURCE_DIR}/multipers/filtrations.pxd.tp"
|
|
8
|
+
"${CMAKE_SOURCE_DIR}/multipers/filtration_conversions.pxd.tp"
|
|
9
|
+
"${CMAKE_SOURCE_DIR}/multipers/slicer.pxd.tp"
|
|
10
|
+
"${CMAKE_SOURCE_DIR}/multipers/mma_structures.pyx.tp"
|
|
11
|
+
"${CMAKE_SOURCE_DIR}/multipers/multiparameter_module_approximation.pyx.tp"
|
|
12
|
+
"${CMAKE_SOURCE_DIR}/multipers/simplex_tree_multi.pyx.tp"
|
|
13
|
+
"${CMAKE_SOURCE_DIR}/multipers/slicer.pyx.tp"
|
|
14
|
+
)
|
|
15
|
+
|
|
16
|
+
set(MULTIPERS_GENERATED_FILES
|
|
17
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/filtrations.pxd"
|
|
18
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/filtration_conversions.pxd"
|
|
19
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/slicer.pxd"
|
|
20
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/mma_structures.pyx"
|
|
21
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/multiparameter_module_approximation.pyx"
|
|
22
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/simplex_tree_multi.pyx"
|
|
23
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/slicer.pyx"
|
|
24
|
+
)
|
|
25
|
+
|
|
26
|
+
set(MULTIPERS_CORE_GENERATED_FILES
|
|
27
|
+
"${MULTIPERS_GENERATED_ROOT}/tools/core/filtrations_instantiations.inc"
|
|
28
|
+
"${MULTIPERS_GENERATED_ROOT}/tools/core/simplextree_instantiations.inc"
|
|
29
|
+
"${MULTIPERS_GENERATED_ROOT}/tools/core/slicer_instantiations.inc"
|
|
30
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/filtrations_extern_templates.h"
|
|
31
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/simplextree_multi_extern_templates.h"
|
|
32
|
+
"${MULTIPERS_GENERATED_ROOT}/multipers/gudhi/slicer_extern_templates.h"
|
|
33
|
+
)
|
|
34
|
+
|
|
35
|
+
set(MULTIPERS_TEMPITA_GRID_GEN "${CMAKE_SOURCE_DIR}/tools/tempita_grid_gen.py")
|
|
36
|
+
|
|
37
|
+
execute_process(
|
|
38
|
+
COMMAND
|
|
39
|
+
"${Python3_EXECUTABLE}" "-c"
|
|
40
|
+
"import importlib.util, pathlib; spec = importlib.util.spec_from_file_location('multipers_user_options', pathlib.Path(r'${CMAKE_SOURCE_DIR}') / 'options.py'); mod = importlib.util.module_from_spec(spec); spec.loader.exec_module(mod); print('1' if 'Degree_rips_bifiltration' in getattr(mod, 'FILTRATION_CONTAINERS', ()) else '0')"
|
|
41
|
+
RESULT_VARIABLE MULTIPERS_FLAT_CONTAINER_DETECT_RESULT
|
|
42
|
+
OUTPUT_VARIABLE MULTIPERS_HAS_FLAT_CONTAINER_RAW
|
|
43
|
+
OUTPUT_STRIP_TRAILING_WHITESPACE
|
|
44
|
+
ERROR_VARIABLE MULTIPERS_FLAT_CONTAINER_DETECT_ERROR
|
|
45
|
+
)
|
|
46
|
+
|
|
47
|
+
if(NOT MULTIPERS_FLAT_CONTAINER_DETECT_RESULT EQUAL 0)
|
|
48
|
+
message(
|
|
49
|
+
FATAL_ERROR
|
|
50
|
+
"Failed to detect FILTRATION_CONTAINERS from options.py: ${MULTIPERS_FLAT_CONTAINER_DETECT_ERROR}"
|
|
51
|
+
)
|
|
52
|
+
endif()
|
|
53
|
+
|
|
54
|
+
set(MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER OFF)
|
|
55
|
+
if(MULTIPERS_HAS_FLAT_CONTAINER_RAW STREQUAL "1")
|
|
56
|
+
set(MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER ON)
|
|
57
|
+
endif()
|
|
58
|
+
|
|
59
|
+
message(
|
|
60
|
+
STATUS
|
|
61
|
+
"MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER=${MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER}"
|
|
62
|
+
)
|
|
63
|
+
|
|
64
|
+
option(
|
|
65
|
+
MULTIPERS_TEMPITA_GRID_VERBOSE
|
|
66
|
+
"Enable verbose Tempita grid generation logs"
|
|
67
|
+
OFF
|
|
68
|
+
)
|
|
69
|
+
|
|
70
|
+
if(MULTIPERS_TEMPITA_GRID_VERBOSE)
|
|
71
|
+
set(MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE "1")
|
|
72
|
+
else()
|
|
73
|
+
set(MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE "0")
|
|
74
|
+
endif()
|
|
75
|
+
|
|
76
|
+
add_custom_command(
|
|
77
|
+
OUTPUT ${MULTIPERS_GENERATED_FILES} ${MULTIPERS_CORE_GENERATED_FILES}
|
|
78
|
+
COMMAND "${CMAKE_COMMAND}" -E make_directory "${MULTIPERS_GENERATED_ROOT}"
|
|
79
|
+
COMMAND "${CMAKE_COMMAND}" -E make_directory "${MULTIPERS_TEMPITA_CACHE_DIR}"
|
|
80
|
+
COMMAND
|
|
81
|
+
"${CMAKE_COMMAND}" -E env
|
|
82
|
+
"MULTIPERS_TEMPITA_GRID_VERBOSE=${MULTIPERS_TEMPITA_GRID_VERBOSE_VALUE}"
|
|
83
|
+
"MULTIPERS_TEMPITA_GRID_OUTPUT_ROOT=${MULTIPERS_GENERATED_ROOT}"
|
|
84
|
+
"MULTIPERS_TEMPITA_CACHE_DIR=${MULTIPERS_TEMPITA_CACHE_DIR}"
|
|
85
|
+
"${Python3_EXECUTABLE}" "${MULTIPERS_TEMPITA_GRID_GEN}"
|
|
86
|
+
COMMAND
|
|
87
|
+
"${CMAKE_COMMAND}" -E env
|
|
88
|
+
"MULTIPERS_TEMPITA_CACHE_DIR=${MULTIPERS_TEMPITA_CACHE_DIR}"
|
|
89
|
+
"${Python3_EXECUTABLE}" "${CMAKE_SOURCE_DIR}/tools/process_tempita.py"
|
|
90
|
+
--source-root "${CMAKE_SOURCE_DIR}"
|
|
91
|
+
--output-root "${MULTIPERS_GENERATED_ROOT}"
|
|
92
|
+
${MULTIPERS_TEMPLATE_FILES}
|
|
93
|
+
DEPENDS
|
|
94
|
+
"${MULTIPERS_TEMPITA_GRID_GEN}"
|
|
95
|
+
"${CMAKE_SOURCE_DIR}/options.py"
|
|
96
|
+
"${CMAKE_SOURCE_DIR}/tools/codegen/_registry.py"
|
|
97
|
+
"${CMAKE_SOURCE_DIR}/tools/process_tempita.py"
|
|
98
|
+
${MULTIPERS_TEMPLATE_FILES}
|
|
99
|
+
WORKING_DIRECTORY "${CMAKE_SOURCE_DIR}"
|
|
100
|
+
VERBATIM
|
|
101
|
+
)
|
|
102
|
+
|
|
103
|
+
add_custom_target(multipers_tempita DEPENDS ${MULTIPERS_GENERATED_FILES} ${MULTIPERS_CORE_GENERATED_FILES})
|
|
104
|
+
|
|
105
|
+
set(MULTIPERS_CYTHON_COMMON_ARGS
|
|
106
|
+
--cplus
|
|
107
|
+
--fast-fail
|
|
108
|
+
--directive language_level=3
|
|
109
|
+
--directive embedsignature=True
|
|
110
|
+
--directive embedsignature.format=python
|
|
111
|
+
--directive binding=True
|
|
112
|
+
--directive infer_types=True
|
|
113
|
+
--directive boundscheck=False
|
|
114
|
+
--directive wraparound=True
|
|
115
|
+
--directive iterable_coroutine=True
|
|
116
|
+
--directive annotation_typing=True
|
|
117
|
+
--directive emit_code_comments=True
|
|
118
|
+
--directive initializedcheck=False
|
|
119
|
+
--directive cdivision=True
|
|
120
|
+
--directive profile=False
|
|
121
|
+
-I "${MULTIPERS_GENERATED_ROOT}"
|
|
122
|
+
-I "${MULTIPERS_GENERATED_ROOT}/multipers"
|
|
123
|
+
-I "${CMAKE_SOURCE_DIR}"
|
|
124
|
+
-I "${CMAKE_SOURCE_DIR}/multipers"
|
|
125
|
+
)
|