multipers 2.4.2b2__tar.gz → 2.5.0__tar.gz

multipers-2.5.0/CITATION.cff

@@ -0,0 +1,28 @@
+cff-version: "1.2.0"
+authors:
+- family-names: Loiseaux
+  given-names: David
+- family-names: Schreiber
+  given-names: Hannah
+doi: 10.5281/zenodo.14042221
+message: If you use this software, please cite our article in the
+  Journal of Open Source Software.
+preferred-citation:
+  authors:
+  - family-names: Loiseaux
+    given-names: David
+  - family-names: Schreiber
+    given-names: Hannah
+  date-published: 2024-11-13
+  doi: 10.21105/joss.06773
+  issn: 2475-9066
+  issue: 103
+  journal: Journal of Open Source Software
+  publisher:
+    name: Open Journals
+  start: 6773
+  title: "multipers: Multiparameter Persistence for Machine Learning"
+  type: article
+  url: "https://joss.theoj.org/papers/10.21105/joss.06773"
+  volume: 9
+title: "multipers: Multiparameter Persistence for Machine Learning"

multipers-2.5.0/CMakeLists.txt

@@ -0,0 +1,32 @@
+cmake_minimum_required(VERSION 3.27)
+project(multipers LANGUAGES C CXX)
+
+if(CMAKE_GENERATOR STREQUAL "Unix Makefiles")
+  find_program(MULTIPERS_MAKE_PROGRAM NAMES make gmake)
+  if(MULTIPERS_MAKE_PROGRAM)
+    set(CMAKE_MAKE_PROGRAM "${MULTIPERS_MAKE_PROGRAM}" CACHE FILEPATH "Make program for Unix Makefiles" FORCE)
+  endif()
+endif()
+
+set(CMAKE_CXX_STANDARD 20)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+set(CMAKE_POSITION_INDEPENDENT_CODE ON)
+set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+set(CMAKE_COLOR_DIAGNOSTICS ON)
+
+if(CMAKE_CXX_COMPILER_ID MATCHES "GNU|Clang")
+  add_compile_options(
+    $<$<COMPILE_LANGUAGE:C>:-fdiagnostics-color=always>
+    $<$<COMPILE_LANGUAGE:CXX>:-fdiagnostics-color=always>
+    -g0
+  )
+endif()
+
+if(MSVC)
+  add_compile_options(/bigobj)
+endif()
+
+include("${CMAKE_SOURCE_DIR}/cmake/MultipersDependencies.cmake")
+include("${CMAKE_SOURCE_DIR}/cmake/MultipersCodegen.cmake")
+include("${CMAKE_SOURCE_DIR}/cmake/MultipersBuild.cmake")
+include("${CMAKE_SOURCE_DIR}/cmake/MultipersInstall.cmake")

{multipers-2.4.2b2/multipers.egg-info → multipers-2.5.0}/PKG-INFO

@@ -1,15 +1,14 @@
 Metadata-Version: 2.4
 Name: multipers
-Version: 2.4.2b2
+Version: 2.5.0
 Summary: Multiparameter Topological Persistence for Machine Learning
-Author-email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
-Maintainer-email: David Loiseaux <david.lapous@proton.me>
-License-Expression: GPL-3.0-or-later
-Project-URL: source, https://github.com/DavidLapous/multipers
-Project-URL: download, https://pypi.org/project/multipers/#files
-Project-URL: tracker, https://github.com/DavidLapous/multipers/issues
-Project-URL: release notes, https://github.com/DavidLapous/multipers/releases
 Keywords: TDA,Persistence,Multiparameter,sklearn,autodiff
+Author-Email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
+Maintainer-Email: David Loiseaux <david.lapous@proton.me>
+License-Expression: GPL-3.0-or-later
+License-File: LICENSE
+License-File: THIRD_PARTY_NOTICES.md
+License-File: licenses/LGPL-3.0-or-later.txt
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
@@ -21,26 +20,11 @@ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
 Classifier: Topic :: Scientific/Engineering :: Mathematics
 Classifier: Topic :: Scientific/Engineering :: Visualization
 Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Project-URL: source, https://github.com/DavidLapous/multipers
+Project-URL: download, https://pypi.org/project/multipers/#files
+Project-URL: tracker, https://github.com/DavidLapous/multipers/issues
+Project-URL: release notes, https://github.com/DavidLapous/multipers/releases
 Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-License-File: ext/AIDA/LICENSE
-License-File: ext/Persistence-Algebra/LICENSE
-License-File: ext/function_delaunay/COPYING
-License-File: ext/function_delaunay/phat/COPYING
-License-File: ext/function_delaunay/phat/COPYING.LESSER
-License-File: ext/mpfree/COPYING
-License-File: ext/mpfree/COPYING.LESSER
-License-File: ext/mpfree/phat_mod/COPYING
-License-File: ext/mpfree/phat_mod/COPYING.LESSER
-License-File: ext/multi_chunk/COPYING
-License-File: ext/multi_chunk/COPYING.LESSER
-License-File: ext/multi_critical/COPYING
-License-File: ext/multi_critical/COPYING.LESSER
-License-File: ext/multi_critical/phat_mod/COPYING
-License-File: ext/multi_critical/phat_mod/COPYING.LESSER
-License-File: licenses/LGPL-3.0-or-later.txt
-License-File: THIRD_PARTY_NOTICES.md
 Requires-Dist: numpy
 Requires-Dist: gudhi>=3.8
 Requires-Dist: tqdm
@@ -51,7 +35,7 @@ Requires-Dist: scikit-learn
 Requires-Dist: filtration-domination
 Requires-Dist: pykeops
 Requires-Dist: pot
-Dynamic: license-file
+Description-Content-Type: text/markdown
 
 # multipers : Multiparameter Persistence for Machine Learning
 [![DOI](https://joss.theoj.org/papers/10.21105/joss.06773/status.svg)](https://doi.org/10.21105/joss.06773) [![Documentation](https://img.shields.io/badge/Documentation-website-blue)](https://davidlapous.github.io/multipers) [![Build, test](https://github.com/DavidLapous/multipers/actions/workflows/python_PR.yml/badge.svg)](https://github.com/DavidLapous/multipers/actions/workflows/python_PR.yml)
@@ -93,16 +77,6 @@ We hence recommend Windows user to use [WSL](https://learn.microsoft.com/en-us/w
 Documentation and build instructions are available
 [here](https://davidlapous.github.io/multipers/compilation.html).
 
-## Licensing
-
-`multipers` distributions that include the compiled external interfaces are provided under
-**GPL-3.0-or-later**.
-
-This is due to linked GPL/LGPL third-party components used by the build, notably
-`AIDA`, `Persistence-Algebra`, `function_delaunay`, `mpfree`, `multi_critical`, and
-`multi_chunk`.
-
-See `THIRD_PARTY_NOTICES.md` for dependency details and pinned revisions used in this workspace.
 
 
 ## Features, and linked projects
@@ -134,8 +108,20 @@ If I missed something, or you want to add something, feel free to open an issue.
 [Luis Scoccola](https://luisscoccola.com/) 
 (Möbius inversion in python, degree-rips using [persistable](https://github.com/LuisScoccola/persistable) and [RIVET](https://github.com/rivetTDA/rivet/)),<br>
 [Mathieu Carrière](https://www-sop.inria.fr/members/Mathieu.Carriere/) (Sliced Wasserstein),<br>
-[Odin Hoff Gardå](https://odinhg.github.io/) (Delaunay Core bifiltration).<br>
-Jan Jendrysiak (Module Decomposition).<br>
+[Odin Hoff Gardå](https://odinhg.github.io/) (Delaunay Core bifiltration),<br>
+[Michael Kerber](https://www.geometrie.tugraz.at/kerber/) ([mpfree](https://bitbucket.org/mkerber/mpfree/src/master/), [function_delaunay](https://bitbucket.org/mkerber/function_delaunay), [multi_critical](https://bitbucket.org/mkerber/multi_critical) [multi_chunck](https://bitbucket.org/mkerber/multi_chunk) backends),<br>
+[Jan Jendrysiak](https://github.com/JanJend) ([Module Decomposition (AIDA)](https://github.com/JanJend/AIDA), [Persistence Algebra](https://github.com/JanJend/Persistence-Algebra)).<br>
+
+## Licensing
+
+`multipers` distributions that include the compiled external interfaces are provided under
+**GPL-3.0-or-later**.
+
+This is due to linked GPL/LGPL third-party components used by the build, notably
+`AIDA`, `Persistence-Algebra`, `function_delaunay`, `mpfree`, `multi_critical`, and
+`multi_chunk`.
+
+See `THIRD_PARTY_NOTICES.md` for dependency details and pinned revisions used in this workspace.
 
 ## Citation
 Please cite this library when using it in scientific publications;

{multipers-2.4.2b2 → multipers-2.5.0}/README.md

@@ -38,16 +38,6 @@ We hence recommend Windows user to use [WSL](https://learn.microsoft.com/en-us/w
 Documentation and build instructions are available
 [here](https://davidlapous.github.io/multipers/compilation.html).
 
-## Licensing
-
-`multipers` distributions that include the compiled external interfaces are provided under
-**GPL-3.0-or-later**.
-
-This is due to linked GPL/LGPL third-party components used by the build, notably
-`AIDA`, `Persistence-Algebra`, `function_delaunay`, `mpfree`, `multi_critical`, and
-`multi_chunk`.
-
-See `THIRD_PARTY_NOTICES.md` for dependency details and pinned revisions used in this workspace.
 
 
 ## Features, and linked projects
@@ -79,8 +69,20 @@ If I missed something, or you want to add something, feel free to open an issue.
 [Luis Scoccola](https://luisscoccola.com/) 
 (Möbius inversion in python, degree-rips using [persistable](https://github.com/LuisScoccola/persistable) and [RIVET](https://github.com/rivetTDA/rivet/)),<br>
 [Mathieu Carrière](https://www-sop.inria.fr/members/Mathieu.Carriere/) (Sliced Wasserstein),<br>
-[Odin Hoff Gardå](https://odinhg.github.io/) (Delaunay Core bifiltration).<br>
-Jan Jendrysiak (Module Decomposition).<br>
+[Odin Hoff Gardå](https://odinhg.github.io/) (Delaunay Core bifiltration),<br>
+[Michael Kerber](https://www.geometrie.tugraz.at/kerber/) ([mpfree](https://bitbucket.org/mkerber/mpfree/src/master/), [function_delaunay](https://bitbucket.org/mkerber/function_delaunay), [multi_critical](https://bitbucket.org/mkerber/multi_critical) [multi_chunck](https://bitbucket.org/mkerber/multi_chunk) backends),<br>
+[Jan Jendrysiak](https://github.com/JanJend) ([Module Decomposition (AIDA)](https://github.com/JanJend/AIDA), [Persistence Algebra](https://github.com/JanJend/Persistence-Algebra)).<br>
+
+## Licensing
+
+`multipers` distributions that include the compiled external interfaces are provided under
+**GPL-3.0-or-later**.
+
+This is due to linked GPL/LGPL third-party components used by the build, notably
+`AIDA`, `Persistence-Algebra`, `function_delaunay`, `mpfree`, `multi_critical`, and
+`multi_chunk`.
+
+See `THIRD_PARTY_NOTICES.md` for dependency details and pinned revisions used in this workspace.
 
 ## Citation
 Please cite this library when using it in scientific publications;

{multipers-2.4.2b2 → multipers-2.5.0}/THIRD_PARTY_NOTICES.md

@@ -24,6 +24,12 @@ As a result, distributed `multipers` artifacts built with these components are l
   - Commit used in this workspace: `a481f8d90af7a97795c467d81fb3db2cf952a58e`
   - License: GPL-3.0-or-later (see upstream `COPYING`)
 
+- `rhomboidtiling_newer_cgal_version`
+  - Upstream: https://github.com/DavidLapous/rhomboidtiling_newer_cgal_version
+  - Header/source path used at build time: `ext/rhomboidtiling_newer_cgal_version`
+  - Commit used in this workspace: `c414cdc60f30196ffd3ce5cda1817368655905f0`
+  - License: MIT (see `ext/rhomboidtiling_newer_cgal_version/LICENSE.md`)
+
 - `mpfree`
   - Upstream: https://bitbucket.org/mkerber/mpfree/
   - Header source path used at build time: `ext/mpfree`
@@ -42,7 +48,13 @@ As a result, distributed `multipers` artifacts built with these components are l
   - Commit used in this workspace: `d686f7efe623169f00951c376949b8bb30448eaf`
   - License: LGPL-3.0-or-later (see upstream `COPYING.LESSER`)
 
+- `PHAT`
+  - Upstream: https://github.com/xoltar/phat
+  - Header source path used at build time: `ext/phat/include`
+  - Commit used in this workspace: `872ca92b33ebe92dff2542cbdee6768e575e80aa`
+  - License: LGPL-3.0-or-later (see `ext/phat/COPYING.LESSER`)
+
 ## Notes
 
-- Build-time include paths for these dependencies are configured in `setup.py`.
+- Build-time include paths for these dependencies are configured in `CMakeLists.txt`.
 - If dependency revisions are updated, update the commit hashes listed here.

multipers-2.5.0/cmake/MultipersBuild.cmake

@@ -0,0 +1,401 @@
+include_guard(GLOBAL)
+
+function(multipers_apply_common_build_flags target_name)
+  target_compile_definitions(
+    ${target_name}
+    PRIVATE
+      NPY_NO_DEPRECATED_API=NPY_2_0_API_VERSION
+      GUDHI_USE_TBB
+      WITH_TBB=ON
+  )
+
+  if(WIN32)
+    target_compile_definitions(
+      ${target_name}
+      PRIVATE
+        MULTIPERS_DISABLE_MPFREE_INTERFACE=1
+        MULTIPERS_DISABLE_FUNCTION_DELAUNAY_INTERFACE=1
+        MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
+        MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
+    )
+  endif()
+
+  if(NOT MULTIPERS_HAS_FLAT_FILTRATION_CONTAINER)
+    target_compile_definitions(
+      ${target_name}
+      PRIVATE
+        MULTIPERS_DISABLE_MULTI_CRITICAL_INTERFACE=1
+    )
+  endif()
+
+  if(NOT CGAL_FOUND)
+    target_compile_definitions(
+      ${target_name}
+      PRIVATE
+        MULTIPERS_DISABLE_RHOMBOID_TILING_INTERFACE=1
+    )
+  endif()
+
+  if(MSVC)
+    target_compile_options(${target_name} PRIVATE /O2 /DNDEBUG /W1 /WX- /openmp)
+  else()
+    target_compile_options(
+      ${target_name}
+      PRIVATE
+        -O3
+        -fno-associative-math
+        -fno-unsafe-math-optimizations
+        -DNDEBUG
+        -Wall
+        -Wextra
+        -Wno-assume
+        -Wno-deprecated-declarations
+    )
+  endif()
+endfunction()
+
+function(multipers_link_openmp target_name)
+  target_link_libraries(${target_name} PRIVATE OpenMP::OpenMP_CXX)
+endfunction()
+
+function(multipers_link_tbb target_name)
+  target_link_libraries(${target_name} PRIVATE TBB::tbb)
+endfunction()
+
+function(multipers_link_cgal target_name)
+  target_link_libraries(${target_name} PRIVATE CGAL::CGAL)
+  # CGAL_Core is optional (provides exact arithmetic via GMP/MPFR)
+  if(TARGET CGAL::CGAL_Core)
+    target_link_libraries(${target_name} PRIVATE CGAL::CGAL_Core)
+  endif()
+endfunction()
+
+set(MULTIPERS_GENERATED_INCLUDE_DIRS
+  "${MULTIPERS_GENERATED_ROOT}/multipers"
+  "${MULTIPERS_GENERATED_ROOT}/multipers/gudhi"
+  "${MULTIPERS_GENERATED_ROOT}/tools/core"
+)
+
+set(MULTIPERS_COMPILED_MODULES_DIR "${CMAKE_BINARY_DIR}/compiled_modules/multipers")
+
+if(WIN32 AND NOT SKBUILD AND NOT DEFINED ENV{MULTIPERS_INTERNAL_WHEEL_BUILD})
+  # Only collect runtime deps for local installs, not wheel builds
+  set(MULTIPERS_WINDOWS_RUNTIME_DEP_SET multipers_windows_runtime_deps)
+  set(MULTIPERS_WINDOWS_RUNTIME_DEP_DIRECTORIES "")
+  if(DEFINED ENV{CONDA_PREFIX} AND NOT "$ENV{CONDA_PREFIX}" STREQUAL "")
+    file(TO_CMAKE_PATH "$ENV{CONDA_PREFIX}" _multipers_conda_prefix)
+    list(APPEND MULTIPERS_WINDOWS_RUNTIME_DEP_DIRECTORIES
+      "${_multipers_conda_prefix}/Library/bin"
+      "${_multipers_conda_prefix}/bin"
+    )
+  endif()
+endif()
+
+function(multipers_add_core_object_library target_name source_file)
+  add_library(${target_name} OBJECT "${source_file}")
+  add_dependencies(${target_name} multipers_tempita ${ARGN})
+  target_include_directories(
+    ${target_name}
+    PRIVATE
+      ${MULTIPERS_GENERATED_INCLUDE_DIRS}
+      ${MULTIPERS_BASE_INCLUDE_DIRS}
+      ${MULTIPERS_PHAT_INCLUDE_DIRS}
+  )
+  multipers_apply_common_build_flags(${target_name})
+endfunction()
+
+multipers_add_core_object_library(
+  multipers_core_filtrations_obj
+  "${CMAKE_SOURCE_DIR}/tools/core/filtrations_core.cc"
+)
+
+multipers_add_core_object_library(
+  multipers_core_simplextree_obj
+  "${CMAKE_SOURCE_DIR}/tools/core/simplextree_core.cc"
+  multipers_core_filtrations_obj
+)
+
+multipers_add_core_object_library(
+  multipers_core_slicer_obj
+  "${CMAKE_SOURCE_DIR}/tools/core/slicer_core.cc"
+  multipers_core_filtrations_obj
+)
+
+add_library(
+  multipers_core_shared
+  SHARED
+  $<TARGET_OBJECTS:multipers_core_filtrations_obj>
+  $<TARGET_OBJECTS:multipers_core_simplextree_obj>
+  $<TARGET_OBJECTS:multipers_core_slicer_obj>
+)
+add_dependencies(multipers_core_shared multipers_tempita)
+multipers_link_tbb(multipers_core_shared)
+
+set(MULTIPERS_LOCAL_RPATH "")
+if(APPLE)
+  set(MULTIPERS_LOCAL_RPATH "@loader_path")
+elseif(UNIX)
+  set(MULTIPERS_LOCAL_RPATH "$ORIGIN")
+endif()
+
+set_target_properties(multipers_core_shared PROPERTIES OUTPUT_NAME "multipers_core")
+set_target_properties(
+  multipers_core_shared
+  PROPERTIES
+    LIBRARY_OUTPUT_DIRECTORY "${MULTIPERS_COMPILED_MODULES_DIR}"
+    RUNTIME_OUTPUT_DIRECTORY "${MULTIPERS_COMPILED_MODULES_DIR}"
+)
+if(WIN32)
+  set_target_properties(multipers_core_shared PROPERTIES WINDOWS_EXPORT_ALL_SYMBOLS ON)
+endif()
+if(MULTIPERS_LOCAL_RPATH)
+  set_target_properties(
+    multipers_core_shared
+    PROPERTIES
+      BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}"
+      INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}"
+  )
+endif()
+if(APPLE)
+  set_target_properties(
+    multipers_core_shared
+    PROPERTIES
+      INSTALL_NAME_DIR "@rpath"
+      SUFFIX ".so"
+  )
+endif()
+
+function(multipers_link_shared_core target_name)
+  target_link_libraries(${target_name} PRIVATE multipers_core_shared)
+  if(MULTIPERS_LOCAL_RPATH)
+    set_property(TARGET ${target_name} APPEND PROPERTY BUILD_RPATH "${MULTIPERS_LOCAL_RPATH}")
+    set_property(TARGET ${target_name} APPEND PROPERTY INSTALL_RPATH "${MULTIPERS_LOCAL_RPATH}")
+  endif()
+endfunction()
+
+# =============================================================================
+# Per-module configuration
+# =============================================================================
+# Each module explicitly declares its dependencies. No conditional checks -
+# if a dependency is missing, CMake will fail with a clear error.
+# To disable a module, remove it from MULTIPERS_MODULES below.
+
+function(multipers_configure_module module_name target_name)
+  # Default: add standard phat includes
+  set(_use_phat_includes TRUE)
+
+  if(module_name STREQUAL "simplex_tree_multi")
+    multipers_link_shared_core(${target_name})
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "slicer")
+    multipers_link_shared_core(${target_name})
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "mma_structures")
+    multipers_link_shared_core(${target_name})
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "multiparameter_module_approximation")
+    multipers_link_shared_core(${target_name})
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "function_rips")
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "point_measure")
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "grids")
+    multipers_link_tbb(${target_name})
+
+  elseif(module_name STREQUAL "io")
+    # No special dependencies
+
+  elseif(module_name STREQUAL "ops")
+    # No special dependencies
+
+  elseif(module_name STREQUAL "_mpfree_interface")
+    multipers_link_shared_core(${target_name})
+    target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
+    target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
+    multipers_link_openmp(${target_name})
+    multipers_link_tbb(${target_name})
+    target_include_directories(${target_name} PRIVATE ${MULTIPERS_MPFREE_INCLUDE_DIRS})
+    set(_use_phat_includes FALSE)
+
+  elseif(module_name STREQUAL "_function_delaunay_interface")
+    multipers_link_shared_core(${target_name})
+    target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
+    target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
+    multipers_link_openmp(${target_name})
+    multipers_link_tbb(${target_name})
+    target_include_directories(${target_name} PRIVATE ${MULTIPERS_FUNCTION_DELAUNAY_INCLUDE_DIRS})
+    set(_use_phat_includes FALSE)
+
+  elseif(module_name STREQUAL "_multi_critical_interface")
+    multipers_link_shared_core(${target_name})
+    target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
+    target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
+    multipers_link_openmp(${target_name})
+    multipers_link_tbb(${target_name})
+    target_include_directories(${target_name} PRIVATE ${MULTIPERS_MULTI_CRITICAL_INCLUDE_DIRS})
+    set(_use_phat_includes FALSE)
+
+  elseif(module_name STREQUAL "_rhomboid_tiling_interface")
+    multipers_link_shared_core(${target_name})
+    target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
+    multipers_link_tbb(${target_name})
+    multipers_link_cgal(${target_name})
+    target_link_libraries(${target_name} PRIVATE multipers_rhomboid_tiling_static)
+    target_include_directories(${target_name} PRIVATE ${MULTIPERS_RHOMBOID_TILING_INCLUDE_DIRS})
+
+  elseif(module_name STREQUAL "_aida_interface")
+    target_link_libraries(${target_name} PRIVATE Boost::system Boost::timer Boost::chrono)
+    target_link_libraries(${target_name} PRIVATE "${MULTIPERS_GMP_LIBRARY}")
+    multipers_link_openmp(${target_name})
+    target_link_libraries(${target_name} PRIVATE multipers_aida_static)
+    target_include_directories(${target_name} PRIVATE ${MULTIPERS_AIDA_INCLUDE_DIRS})
+    set(_use_phat_includes FALSE)
+
+  endif()
+
+  # Add standard phat includes unless module uses its own forked version
+  if(_use_phat_includes)
+    target_include_directories(${target_name} BEFORE PRIVATE ${MULTIPERS_PHAT_INCLUDE_DIRS})
+  endif()
+
+  set_target_properties(${target_name} PROPERTIES COMPILE_FLAGS "--no-warnings")
+endfunction()
+
+function(multipers_add_extension module_name)
+  string(REPLACE "." "/" module_path "${module_name}")
+  set(source_pyx_file "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx")
+  set(generated_pyx_file "${MULTIPERS_GENERATED_ROOT}/multipers/${module_path}.pyx")
+  set(pyx_template "${CMAKE_SOURCE_DIR}/multipers/${module_path}.pyx.tp")
+  if(EXISTS "${pyx_template}")
+    set(pyx_file "${generated_pyx_file}")
+  elseif(EXISTS "${source_pyx_file}")
+    set(pyx_file "${source_pyx_file}")
+  else()
+    message(FATAL_ERROR "Missing Cython source/template: ${source_pyx_file}")
+  endif()
+
+  set(cpp_file "${CMAKE_BINARY_DIR}/cython/${module_path}.cpp")
+  set(dep_file "${cpp_file}.dep")
+  get_filename_component(cpp_dir "${cpp_file}" DIRECTORY)
+
+  add_custom_command(
+    OUTPUT "${cpp_file}"
+    COMMAND "${CMAKE_COMMAND}" -E make_directory "${cpp_dir}"
+    COMMAND "${Python3_EXECUTABLE}" -m cython ${MULTIPERS_CYTHON_COMMON_ARGS} -M "${pyx_file}" -o "${cpp_file}"
+    DEPENDS "${pyx_file}" ${MULTIPERS_GENERATED_FILES}
+    DEPFILE "${dep_file}"
+    WORKING_DIRECTORY "${CMAKE_BINARY_DIR}"
+    VERBATIM
+  )
+
+  string(REPLACE "." "_" target_name "multipers_${module_name}")
+  Python3_add_library(${target_name} MODULE WITH_SOABI "${cpp_file}")
+  add_dependencies(${target_name} multipers_tempita)
+  set_target_properties(${target_name} PROPERTIES PREFIX "")
+
+  target_include_directories(
+    ${target_name}
+    PRIVATE
+      ${MULTIPERS_GENERATED_INCLUDE_DIRS}
+      ${MULTIPERS_BASE_INCLUDE_DIRS}
+  )
+  multipers_apply_common_build_flags(${target_name})
+  multipers_configure_module("${module_name}" ${target_name})
+
+  set(output_name "${module_name}")
+  set(package_dir "multipers")
+
+  set_target_properties(
+    ${target_name}
+    PROPERTIES
+      OUTPUT_NAME "${output_name}"
+      LIBRARY_OUTPUT_DIRECTORY "${MULTIPERS_COMPILED_MODULES_DIR}"
+      RUNTIME_OUTPUT_DIRECTORY "${MULTIPERS_COMPILED_MODULES_DIR}"
+  )
+  if(WIN32)
+    if(DEFINED MULTIPERS_WINDOWS_RUNTIME_DEP_SET)
+      install(TARGETS ${target_name}
+        RUNTIME_DEPENDENCY_SET ${MULTIPERS_WINDOWS_RUNTIME_DEP_SET}
+        LIBRARY DESTINATION "${package_dir}"
+        RUNTIME DESTINATION "${package_dir}"
+        ARCHIVE DESTINATION "${package_dir}"
+      )
+    else()
+      install(TARGETS ${target_name}
+        LIBRARY DESTINATION "${package_dir}"
+        RUNTIME DESTINATION "${package_dir}"
+        ARCHIVE DESTINATION "${package_dir}"
+      )
+    endif()
+  else()
+
+    install(TARGETS ${target_name}
+    LIBRARY DESTINATION "${package_dir}"
+  )
+  endif()
+endfunction()
+
+set(MULTIPERS_MODULES
+  simplex_tree_multi
+  io
+  function_rips
+  mma_structures
+  multiparameter_module_approximation
+  point_measure
+  grids
+  slicer
+  ops
+  _mpfree_interface
+  _aida_interface
+  _function_delaunay_interface
+  _multi_critical_interface
+  _rhomboid_tiling_interface
+)
+
+if(WIN32)
+  list(REMOVE_ITEM MULTIPERS_MODULES
+    _aida_interface
+    # _mpfree_interface
+    # _function_delaunay_interface
+    # _multi_critical_interface
+  )
+endif()
+
+foreach(module_name IN LISTS MULTIPERS_MODULES)
+  multipers_add_extension(${module_name})
+  string(REPLACE "." "_" module_target_name "multipers_${module_name}")
+  list(APPEND MULTIPERS_EXTENSION_TARGETS ${module_target_name})
+endforeach()
+
+if(WIN32 AND DEFINED MULTIPERS_WINDOWS_RUNTIME_DEP_SET)
+  set(_multipers_runtime_dependency_install_args
+    DESTINATION "multipers"
+    PRE_EXCLUDE_REGEXES
+      [=[python[0-9]+\.dll]=]
+      [=[vcruntime.*\.dll]=]
+      [=[msvcp.*\.dll]=]
+      [=[ucrtbase\.dll]=]
+      [=[concrt.*\.dll]=]
+    POST_EXCLUDE_REGEXES
+      [=[.*[Ww]indows[/\\][Ss]ystem32[/\\]]=]
+      [=[api-ms-win-.*]=]
+      [=[ext-ms-.*]=]
+  )
+  if(MULTIPERS_WINDOWS_RUNTIME_DEP_DIRECTORIES)
+    list(APPEND _multipers_runtime_dependency_install_args
+      DIRECTORIES ${MULTIPERS_WINDOWS_RUNTIME_DEP_DIRECTORIES}
+    )
+  endif()
+
+  install(
+    RUNTIME_DEPENDENCY_SET ${MULTIPERS_WINDOWS_RUNTIME_DEP_SET}
+    ${_multipers_runtime_dependency_install_args}
+  )
+endif()