multipers 2.4.2b1__tar.gz → 2.5.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- multipers-2.5.0/CITATION.cff +28 -0
- multipers-2.5.0/CMakeLists.txt +32 -0
- multipers-2.5.0/LICENSE +674 -0
- {multipers-2.4.2b1/multipers.egg-info → multipers-2.5.0}/PKG-INFO +29 -15
- {multipers-2.4.2b1 → multipers-2.5.0}/README.md +17 -4
- multipers-2.5.0/THIRD_PARTY_NOTICES.md +60 -0
- multipers-2.5.0/cmake/MultipersBuild.cmake +401 -0
- multipers-2.5.0/cmake/MultipersCodegen.cmake +128 -0
- multipers-2.5.0/cmake/MultipersDependencies.cmake +109 -0
- multipers-2.5.0/cmake/MultipersInstall.cmake +41 -0
- multipers-2.5.0/ext/AIDA/CITATION.cff +13 -0
- multipers-2.5.0/ext/AIDA/LICENSE +674 -0
- multipers-2.5.0/ext/AIDA/README.md +201 -0
- multipers-2.5.0/ext/AIDA/visualise_pointset.py +49 -0
- multipers-2.5.0/ext/AIDA/visualise_pres.py +129 -0
- multipers-2.5.0/ext/AIDA/visualise_reso.py +383 -0
- multipers-2.5.0/ext/Persistence-Algebra/CITATION.cff +13 -0
- multipers-2.5.0/ext/Persistence-Algebra/LICENSE +674 -0
- multipers-2.5.0/ext/Persistence-Algebra/README.md +1 -0
- multipers-2.5.0/ext/Persistence-Algebra/analyse_ind.cpp +303 -0
- multipers-2.5.0/ext/Persistence-Algebra/birth_death.cpp +80 -0
- multipers-2.5.0/ext/Persistence-Algebra/cut_module.cpp +62 -0
- multipers-2.5.0/ext/Persistence-Algebra/hom.cpp +161 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/graded_matrix.hpp +11 -3
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/homomorphisms.hpp +184 -96
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/r2graded_matrix.hpp +52 -3
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/sparse_matrix.hpp +48 -0
- multipers-2.5.0/ext/Persistence-Algebra/minimize.cpp +44 -0
- multipers-2.5.0/ext/Persistence-Algebra/pres_to_quiver.cpp +101 -0
- multipers-2.5.0/ext/Persistence-Algebra/resolution.cpp +167 -0
- multipers-2.5.0/ext/Persistence-Algebra/shift_endo.cpp +43 -0
- multipers-2.5.0/ext/Persistence-Algebra/size.cpp +142 -0
- multipers-2.5.0/ext/Persistence-Algebra/snap_grid.cpp +60 -0
- multipers-2.5.0/ext/Persistence-Algebra/submodule_at.cpp +52 -0
- multipers-2.5.0/ext/Persistence-Algebra/thickness.cpp +169 -0
- multipers-2.5.0/ext/Persistence-Algebra/visualise_reso.py +381 -0
- multipers-2.5.0/ext/function_delaunay/COPYING +674 -0
- multipers-2.5.0/ext/function_delaunay/README.md +95 -0
- multipers-2.5.0/ext/function_delaunay/alpha_from_gudhi.py +69 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Delaunay_triangulation_accessors.h +401 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Grade_map.h +78 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Meb_accessors.h +361 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Miniball.hpp +533 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Point_with_densities.h +91 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/boost_timers.h +89 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/compute_meb_radii_of_simplex_tree.h +305 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/count_size_of_delaunay_triangulation.h +150 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/function_delaunay_with_meb.h +224 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/get_simplices_from_triangulation.h +747 -0
- multipers-2.5.0/ext/function_delaunay/include/function_delaunay/mem_info.h +30 -0
- multipers-2.5.0/ext/function_delaunay/misc/compare_simplices.py +63 -0
- multipers-2.5.0/ext/function_delaunay/misc/functions.cpp +167 -0
- multipers-2.5.0/ext/function_delaunay/misc/generate_summaries.py +120 -0
- multipers-2.5.0/ext/function_delaunay/misc/points_on_cube.py +22 -0
- multipers-2.5.0/ext/function_delaunay/misc/points_on_sphere.py +29 -0
- multipers-2.5.0/ext/function_delaunay/misc/points_on_torus.py +34 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/Graded_matrix.h +129 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/Grid_scheduler.h +115 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/boost_timers.h +64 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/global.h +33 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree.h +397 -0
- multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree_subroutines.h +587 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +630 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +117 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
- multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
- multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/Graded_matrix.h +74 -0
- multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/basic.h +29 -0
- multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/boost_timers.h +52 -0
- multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/multi_chunk.h +289 -0
- multipers-2.5.0/ext/function_delaunay/phat/COPYING +674 -0
- multipers-2.5.0/ext/function_delaunay/phat/COPYING.LESSER +165 -0
- multipers-2.5.0/ext/function_delaunay/phat/README.md +148 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/chunk_reduction.h +226 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/row_reduction.h +56 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/spectral_sequence_reduction.h +80 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/standard_reduction.h +46 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/twist_reduction.h +51 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/boundary_matrix.h +381 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/compute_persistence_pairs.h +61 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/dualize.h +74 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/misc.h +75 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/thread_local_storage.h +52 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/persistence_pairs.h +155 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Container_traits.h +75 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Pivot_representation.h +118 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Uniform_representation.h +113 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Unordered_map_container_traits.h +120 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/bit_tree_pivot_column.h +172 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/default_representations.h +47 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/full_pivot_column.h +107 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/heap_column_rep.h +166 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/heap_pivot_column.h +136 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/list_column_rep.h +101 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/set_column_rep.h +100 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/sparse_pivot_column.h +86 -0
- multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/vector_column_rep.h +106 -0
- multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/Column_data.h +90 -0
- multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/Scc.h +404 -0
- multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/basic.h +19 -0
- multipers-2.5.0/ext/function_delaunay/src/main.cpp +532 -0
- multipers-2.5.0/ext/function_delaunay/src/persistence_up_to_density.cpp +134 -0
- multipers-2.5.0/ext/mpfree/COPYING +674 -0
- multipers-2.5.0/ext/mpfree/COPYING.LESSER +165 -0
- multipers-2.5.0/ext/mpfree/README.md +69 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/Graded_matrix.h +129 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/Grid_scheduler.h +115 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/boost_timers.h +64 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/global.h +33 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/mpfree.h +407 -0
- multipers-2.5.0/ext/mpfree/include/mpfree/mpfree_subroutines.h +587 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +737 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +120 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
- multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
- multipers-2.5.0/ext/mpfree/phat_mod/COPYING +674 -0
- multipers-2.5.0/ext/mpfree/phat_mod/COPYING.LESSER +165 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/boundary_matrix.h +381 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/helpers/misc.h +75 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/helpers/thread_local_storage.h +52 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Container_traits.h +75 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Pivot_representation.h +118 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Uniform_representation.h +113 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Unordered_map_container_traits.h +120 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/bit_tree_pivot_column.h +172 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/default_representations.h +47 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/full_pivot_column.h +107 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/heap_column_rep.h +167 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/heap_pivot_column.h +136 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/list_column_rep.h +101 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/set_column_rep.h +100 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/sparse_pivot_column.h +86 -0
- multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/vector_column_rep.h +108 -0
- multipers-2.5.0/ext/mpfree/scc_mod/include/scc/Column_data.h +90 -0
- multipers-2.5.0/ext/mpfree/scc_mod/include/scc/Scc.h +401 -0
- multipers-2.5.0/ext/mpfree/scc_mod/include/scc/basic.h +19 -0
- multipers-2.5.0/ext/mpfree/src/mpfree.cpp +220 -0
- multipers-2.5.0/ext/multi_chunk/COPYING +674 -0
- multipers-2.5.0/ext/multi_chunk/COPYING.LESSER +165 -0
- multipers-2.5.0/ext/multi_chunk/README.md +57 -0
- multipers-2.5.0/ext/multi_chunk/include/multi_chunk/Graded_matrix.h +74 -0
- multipers-2.5.0/ext/multi_chunk/include/multi_chunk/basic.h +29 -0
- multipers-2.5.0/ext/multi_chunk/include/multi_chunk/boost_timers.h +52 -0
- multipers-2.5.0/ext/multi_chunk/include/multi_chunk/multi_chunk.h +306 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +801 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +235 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
- multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/boundary_matrix.h +381 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/helpers/misc.h +75 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/helpers/thread_local_storage.h +52 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Container_traits.h +75 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Pivot_representation.h +118 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Uniform_representation.h +113 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Unordered_map_container_traits.h +120 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/bit_tree_pivot_column.h +172 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/default_representations.h +47 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/full_pivot_column.h +107 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/heap_column_rep.h +167 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/heap_pivot_column.h +136 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/list_column_rep.h +101 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/set_column_rep.h +100 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/sparse_pivot_column.h +86 -0
- multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/vector_column_rep.h +108 -0
- multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/Column_data.h +90 -0
- multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/Scc.h +401 -0
- multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/basic.h +19 -0
- multipers-2.5.0/ext/multi_chunk/src/multi_chunk.cpp +43 -0
- multipers-2.5.0/ext/multi_critical/COPYING +674 -0
- multipers-2.5.0/ext/multi_critical/COPYING.LESSER +165 -0
- multipers-2.5.0/ext/multi_critical/README.md +83 -0
- multipers-2.5.0/ext/multi_critical/include/multi_critical/Grade.h +137 -0
- multipers-2.5.0/ext/multi_critical/include/multi_critical/basic.h +30 -0
- multipers-2.5.0/ext/multi_critical/include/multi_critical/boost_timers.h +118 -0
- multipers-2.5.0/ext/multi_critical/include/multi_critical/firep.h +218 -0
- multipers-2.5.0/ext/multi_critical/include/multi_critical/free_resolution.h +1256 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/.#Graded_matrix.h +1 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/Graded_matrix.h +129 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/Grid_scheduler.h +115 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/boost_timers.h +64 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/global.h +33 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/mpfree.h +407 -0
- multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/mpfree_subroutines.h +587 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +788 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +235 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
- multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
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- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_functions.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_functions.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_helpers.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_helpers.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_interface.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/block.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/block.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/config.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/option_parser.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/vectorspace_decompositions.cpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/bitset_algebra.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/column_types.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/dense_matrix.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/draw_hf.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/general.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/graded_linalg.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/grid_scheduler.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/matrix_base.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/modules.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/orders_and_graphs.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/r3graded_matrix.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/to_quiver.hpp +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/MOL2.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/UCR.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/__init__.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/graphs.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/immuno_regions.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/minimal_presentation_to_st_bf.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/pytorch2simplextree.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/shape3d.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/synthetic.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/Simplex_tree_interface.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Debug_utils.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_operators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_shared.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Z2_field.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Z2_field_operators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field_operators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field_shared.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_filtration/multi_filtration_utils.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Box.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Multi_parameter_filtered_complex_pcoh_interface.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_cohomology.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_vineyard.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Off_reader.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/index_mapper.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_on_a_line.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_on_rectangle.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Points_off_io.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Projective_cover_kernel.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simple_object_pool.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/filtration_value_utils.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Thread_safe_slicer.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/distance_functions.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/graph_simplicial_complex.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/multi_simplex_tree_helpers.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/persistence_interval.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/reader_utils.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/slicer_helpers.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/tmp_h0_pers/mma_interface_h0.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/tmp_h0_pers/naive_merge_tree.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/__init__.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/accuracies.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/invariants_with_persistable.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/tools.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/diff_helpers.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/euler_characteristic.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/hilbert_function.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/persistence_slices.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/rank_invariant.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_edge_collapse.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_module_approximation/debug.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_module_approximation/format_python-cpp.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/pickle.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/plots.py +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/tensor/tensor.h +0 -0
- {multipers-2.4.2b1 → multipers-2.5.0}/multipers/tensor.pxd +0 -0
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doi: 10.5281/zenodo.14042221
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message: If you use this software, please cite our article in the
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Journal of Open Source Software.
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given-names: Hannah
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date-published: 2024-11-13
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doi: 10.21105/joss.06773
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issn: 2475-9066
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issue: 103
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journal: Journal of Open Source Software
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publisher:
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name: Open Journals
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title: "multipers: Multiparameter Persistence for Machine Learning"
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type: article
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url: "https://joss.theoj.org/papers/10.21105/joss.06773"
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volume: 9
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title: "multipers: Multiparameter Persistence for Machine Learning"
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cmake_minimum_required(VERSION 3.27)
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project(multipers LANGUAGES C CXX)
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if(CMAKE_GENERATOR STREQUAL "Unix Makefiles")
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find_program(MULTIPERS_MAKE_PROGRAM NAMES make gmake)
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if(MULTIPERS_MAKE_PROGRAM)
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set(CMAKE_MAKE_PROGRAM "${MULTIPERS_MAKE_PROGRAM}" CACHE FILEPATH "Make program for Unix Makefiles" FORCE)
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endif()
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set(CMAKE_CXX_STANDARD_REQUIRED ON)
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set(CMAKE_POSITION_INDEPENDENT_CODE ON)
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set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
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set(CMAKE_COLOR_DIAGNOSTICS ON)
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add_compile_options(
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$<$<COMPILE_LANGUAGE:C>:-fdiagnostics-color=always>
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$<$<COMPILE_LANGUAGE:CXX>:-fdiagnostics-color=always>
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endif()
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersDependencies.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersCodegen.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersBuild.cmake")
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include("${CMAKE_SOURCE_DIR}/cmake/MultipersInstall.cmake")
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