multipers 2.4.2b1__tar.gz → 2.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (575) hide show
  1. multipers-2.5.0/CITATION.cff +28 -0
  2. multipers-2.5.0/CMakeLists.txt +32 -0
  3. multipers-2.5.0/LICENSE +674 -0
  4. {multipers-2.4.2b1/multipers.egg-info → multipers-2.5.0}/PKG-INFO +29 -15
  5. {multipers-2.4.2b1 → multipers-2.5.0}/README.md +17 -4
  6. multipers-2.5.0/THIRD_PARTY_NOTICES.md +60 -0
  7. multipers-2.5.0/cmake/MultipersBuild.cmake +401 -0
  8. multipers-2.5.0/cmake/MultipersCodegen.cmake +128 -0
  9. multipers-2.5.0/cmake/MultipersDependencies.cmake +109 -0
  10. multipers-2.5.0/cmake/MultipersInstall.cmake +41 -0
  11. multipers-2.5.0/ext/AIDA/CITATION.cff +13 -0
  12. multipers-2.5.0/ext/AIDA/LICENSE +674 -0
  13. multipers-2.5.0/ext/AIDA/README.md +201 -0
  14. multipers-2.5.0/ext/AIDA/visualise_pointset.py +49 -0
  15. multipers-2.5.0/ext/AIDA/visualise_pres.py +129 -0
  16. multipers-2.5.0/ext/AIDA/visualise_reso.py +383 -0
  17. multipers-2.5.0/ext/Persistence-Algebra/CITATION.cff +13 -0
  18. multipers-2.5.0/ext/Persistence-Algebra/LICENSE +674 -0
  19. multipers-2.5.0/ext/Persistence-Algebra/README.md +1 -0
  20. multipers-2.5.0/ext/Persistence-Algebra/analyse_ind.cpp +303 -0
  21. multipers-2.5.0/ext/Persistence-Algebra/birth_death.cpp +80 -0
  22. multipers-2.5.0/ext/Persistence-Algebra/cut_module.cpp +62 -0
  23. multipers-2.5.0/ext/Persistence-Algebra/hom.cpp +161 -0
  24. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/graded_matrix.hpp +11 -3
  25. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/homomorphisms.hpp +184 -96
  26. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/r2graded_matrix.hpp +52 -3
  27. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/sparse_matrix.hpp +48 -0
  28. multipers-2.5.0/ext/Persistence-Algebra/minimize.cpp +44 -0
  29. multipers-2.5.0/ext/Persistence-Algebra/pres_to_quiver.cpp +101 -0
  30. multipers-2.5.0/ext/Persistence-Algebra/resolution.cpp +167 -0
  31. multipers-2.5.0/ext/Persistence-Algebra/shift_endo.cpp +43 -0
  32. multipers-2.5.0/ext/Persistence-Algebra/size.cpp +142 -0
  33. multipers-2.5.0/ext/Persistence-Algebra/snap_grid.cpp +60 -0
  34. multipers-2.5.0/ext/Persistence-Algebra/submodule_at.cpp +52 -0
  35. multipers-2.5.0/ext/Persistence-Algebra/thickness.cpp +169 -0
  36. multipers-2.5.0/ext/Persistence-Algebra/visualise_reso.py +381 -0
  37. multipers-2.5.0/ext/function_delaunay/COPYING +674 -0
  38. multipers-2.5.0/ext/function_delaunay/README.md +95 -0
  39. multipers-2.5.0/ext/function_delaunay/alpha_from_gudhi.py +69 -0
  40. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Delaunay_triangulation_accessors.h +401 -0
  41. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Grade_map.h +78 -0
  42. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Meb_accessors.h +361 -0
  43. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Miniball.hpp +533 -0
  44. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/Point_with_densities.h +91 -0
  45. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/boost_timers.h +89 -0
  46. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/compute_meb_radii_of_simplex_tree.h +305 -0
  47. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/count_size_of_delaunay_triangulation.h +150 -0
  48. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/function_delaunay_with_meb.h +224 -0
  49. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/get_simplices_from_triangulation.h +747 -0
  50. multipers-2.5.0/ext/function_delaunay/include/function_delaunay/mem_info.h +30 -0
  51. multipers-2.5.0/ext/function_delaunay/misc/compare_simplices.py +63 -0
  52. multipers-2.5.0/ext/function_delaunay/misc/functions.cpp +167 -0
  53. multipers-2.5.0/ext/function_delaunay/misc/generate_summaries.py +120 -0
  54. multipers-2.5.0/ext/function_delaunay/misc/points_on_cube.py +22 -0
  55. multipers-2.5.0/ext/function_delaunay/misc/points_on_sphere.py +29 -0
  56. multipers-2.5.0/ext/function_delaunay/misc/points_on_torus.py +34 -0
  57. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/Graded_matrix.h +129 -0
  58. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/Grid_scheduler.h +115 -0
  59. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/boost_timers.h +64 -0
  60. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/global.h +33 -0
  61. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree.h +397 -0
  62. multipers-2.5.0/ext/function_delaunay/mpfree_mod/include/mpfree/mpfree_subroutines.h +587 -0
  63. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
  64. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +630 -0
  65. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
  66. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
  67. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
  68. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +117 -0
  69. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
  70. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
  71. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
  72. multipers-2.5.0/ext/function_delaunay/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
  73. multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/Graded_matrix.h +74 -0
  74. multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/basic.h +29 -0
  75. multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/boost_timers.h +52 -0
  76. multipers-2.5.0/ext/function_delaunay/multi_chunk_mod/include/multi_chunk/multi_chunk.h +289 -0
  77. multipers-2.5.0/ext/function_delaunay/phat/COPYING +674 -0
  78. multipers-2.5.0/ext/function_delaunay/phat/COPYING.LESSER +165 -0
  79. multipers-2.5.0/ext/function_delaunay/phat/README.md +148 -0
  80. multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/chunk_reduction.h +226 -0
  81. multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/row_reduction.h +56 -0
  82. multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/spectral_sequence_reduction.h +80 -0
  83. multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/standard_reduction.h +46 -0
  84. multipers-2.5.0/ext/function_delaunay/phat/include/phat/algorithms/twist_reduction.h +51 -0
  85. multipers-2.5.0/ext/function_delaunay/phat/include/phat/boundary_matrix.h +381 -0
  86. multipers-2.5.0/ext/function_delaunay/phat/include/phat/compute_persistence_pairs.h +61 -0
  87. multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/dualize.h +74 -0
  88. multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/misc.h +75 -0
  89. multipers-2.5.0/ext/function_delaunay/phat/include/phat/helpers/thread_local_storage.h +52 -0
  90. multipers-2.5.0/ext/function_delaunay/phat/include/phat/persistence_pairs.h +155 -0
  91. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Container_traits.h +75 -0
  92. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Pivot_representation.h +118 -0
  93. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Uniform_representation.h +113 -0
  94. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/Unordered_map_container_traits.h +120 -0
  95. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/bit_tree_pivot_column.h +172 -0
  96. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/default_representations.h +47 -0
  97. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/full_pivot_column.h +107 -0
  98. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/heap_column_rep.h +166 -0
  99. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/heap_pivot_column.h +136 -0
  100. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/list_column_rep.h +101 -0
  101. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/set_column_rep.h +100 -0
  102. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/sparse_pivot_column.h +86 -0
  103. multipers-2.5.0/ext/function_delaunay/phat/include/phat/representations/vector_column_rep.h +106 -0
  104. multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/Column_data.h +90 -0
  105. multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/Scc.h +404 -0
  106. multipers-2.5.0/ext/function_delaunay/scc_mod/include/scc/basic.h +19 -0
  107. multipers-2.5.0/ext/function_delaunay/src/main.cpp +532 -0
  108. multipers-2.5.0/ext/function_delaunay/src/persistence_up_to_density.cpp +134 -0
  109. multipers-2.5.0/ext/mpfree/COPYING +674 -0
  110. multipers-2.5.0/ext/mpfree/COPYING.LESSER +165 -0
  111. multipers-2.5.0/ext/mpfree/README.md +69 -0
  112. multipers-2.5.0/ext/mpfree/include/mpfree/Graded_matrix.h +129 -0
  113. multipers-2.5.0/ext/mpfree/include/mpfree/Grid_scheduler.h +115 -0
  114. multipers-2.5.0/ext/mpfree/include/mpfree/boost_timers.h +64 -0
  115. multipers-2.5.0/ext/mpfree/include/mpfree/global.h +33 -0
  116. multipers-2.5.0/ext/mpfree/include/mpfree/mpfree.h +407 -0
  117. multipers-2.5.0/ext/mpfree/include/mpfree/mpfree_subroutines.h +587 -0
  118. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
  119. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +737 -0
  120. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
  121. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
  122. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
  123. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +120 -0
  124. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
  125. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
  126. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
  127. multipers-2.5.0/ext/mpfree/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
  128. multipers-2.5.0/ext/mpfree/phat_mod/COPYING +674 -0
  129. multipers-2.5.0/ext/mpfree/phat_mod/COPYING.LESSER +165 -0
  130. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/boundary_matrix.h +381 -0
  131. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/helpers/misc.h +75 -0
  132. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/helpers/thread_local_storage.h +52 -0
  133. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Container_traits.h +75 -0
  134. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Pivot_representation.h +118 -0
  135. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Uniform_representation.h +113 -0
  136. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/Unordered_map_container_traits.h +120 -0
  137. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/bit_tree_pivot_column.h +172 -0
  138. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/default_representations.h +47 -0
  139. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/full_pivot_column.h +107 -0
  140. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/heap_column_rep.h +167 -0
  141. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/heap_pivot_column.h +136 -0
  142. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/list_column_rep.h +101 -0
  143. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/set_column_rep.h +100 -0
  144. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/sparse_pivot_column.h +86 -0
  145. multipers-2.5.0/ext/mpfree/phat_mod/include/phat/representations/vector_column_rep.h +108 -0
  146. multipers-2.5.0/ext/mpfree/scc_mod/include/scc/Column_data.h +90 -0
  147. multipers-2.5.0/ext/mpfree/scc_mod/include/scc/Scc.h +401 -0
  148. multipers-2.5.0/ext/mpfree/scc_mod/include/scc/basic.h +19 -0
  149. multipers-2.5.0/ext/mpfree/src/mpfree.cpp +220 -0
  150. multipers-2.5.0/ext/multi_chunk/COPYING +674 -0
  151. multipers-2.5.0/ext/multi_chunk/COPYING.LESSER +165 -0
  152. multipers-2.5.0/ext/multi_chunk/README.md +57 -0
  153. multipers-2.5.0/ext/multi_chunk/include/multi_chunk/Graded_matrix.h +74 -0
  154. multipers-2.5.0/ext/multi_chunk/include/multi_chunk/basic.h +29 -0
  155. multipers-2.5.0/ext/multi_chunk/include/multi_chunk/boost_timers.h +52 -0
  156. multipers-2.5.0/ext/multi_chunk/include/multi_chunk/multi_chunk.h +306 -0
  157. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
  158. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +801 -0
  159. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
  160. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h +167 -0
  161. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/basic.h +30 -0
  162. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h +235 -0
  163. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
  164. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h +65 -0
  165. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h +302 -0
  166. multipers-2.5.0/ext/multi_chunk/mpp_utils_mod/include/mpp_utils/sorting_utility.h +186 -0
  167. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/boundary_matrix.h +381 -0
  168. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/helpers/misc.h +75 -0
  169. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/helpers/thread_local_storage.h +52 -0
  170. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Container_traits.h +75 -0
  171. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Pivot_representation.h +118 -0
  172. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Uniform_representation.h +113 -0
  173. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/Unordered_map_container_traits.h +120 -0
  174. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/bit_tree_pivot_column.h +172 -0
  175. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/default_representations.h +47 -0
  176. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/full_pivot_column.h +107 -0
  177. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/heap_column_rep.h +167 -0
  178. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/heap_pivot_column.h +136 -0
  179. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/list_column_rep.h +101 -0
  180. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/set_column_rep.h +100 -0
  181. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/sparse_pivot_column.h +86 -0
  182. multipers-2.5.0/ext/multi_chunk/phat_mod/include/phat/representations/vector_column_rep.h +108 -0
  183. multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/Column_data.h +90 -0
  184. multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/Scc.h +401 -0
  185. multipers-2.5.0/ext/multi_chunk/scc_mod/include/scc/basic.h +19 -0
  186. multipers-2.5.0/ext/multi_chunk/src/multi_chunk.cpp +43 -0
  187. multipers-2.5.0/ext/multi_critical/COPYING +674 -0
  188. multipers-2.5.0/ext/multi_critical/COPYING.LESSER +165 -0
  189. multipers-2.5.0/ext/multi_critical/README.md +83 -0
  190. multipers-2.5.0/ext/multi_critical/include/multi_critical/Grade.h +137 -0
  191. multipers-2.5.0/ext/multi_critical/include/multi_critical/basic.h +30 -0
  192. multipers-2.5.0/ext/multi_critical/include/multi_critical/boost_timers.h +118 -0
  193. multipers-2.5.0/ext/multi_critical/include/multi_critical/firep.h +218 -0
  194. multipers-2.5.0/ext/multi_critical/include/multi_critical/free_resolution.h +1256 -0
  195. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/.#Graded_matrix.h +1 -0
  196. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/Graded_matrix.h +129 -0
  197. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/Grid_scheduler.h +115 -0
  198. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/boost_timers.h +64 -0
  199. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/global.h +33 -0
  200. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/mpfree.h +407 -0
  201. multipers-2.5.0/ext/multi_critical/mpfree_mod/include/mpfree/mpfree_subroutines.h +587 -0
  202. multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h +83 -0
  203. multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix.h +788 -0
  204. multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h +141 -0
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  208. multipers-2.5.0/ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h +65 -0
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  212. multipers-2.5.0/ext/multi_critical/multi_chunk_mod/include/multi_chunk/Graded_matrix.h +74 -0
  213. multipers-2.5.0/ext/multi_critical/multi_chunk_mod/include/multi_chunk/basic.h +29 -0
  214. multipers-2.5.0/ext/multi_critical/multi_chunk_mod/include/multi_chunk/boost_timers.h +52 -0
  215. multipers-2.5.0/ext/multi_critical/multi_chunk_mod/include/multi_chunk/multi_chunk.h +306 -0
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  224. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/boundary_matrix.h +381 -0
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  229. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/persistence_pairs.h +155 -0
  230. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/Container_traits.h +75 -0
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  233. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/Unordered_map_container_traits.h +120 -0
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  235. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/default_representations.h +47 -0
  236. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/full_pivot_column.h +107 -0
  237. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/heap_column_rep.h +166 -0
  238. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/heap_pivot_column.h +136 -0
  239. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/list_column_rep.h +101 -0
  240. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/set_column_rep.h +100 -0
  241. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/sparse_pivot_column.h +86 -0
  242. multipers-2.5.0/ext/multi_critical/phat_mod/include/phat/representations/vector_column_rep.h +106 -0
  243. multipers-2.5.0/ext/multi_critical/scc_mod/include/scc/Column_data.h +97 -0
  244. multipers-2.5.0/ext/multi_critical/scc_mod/include/scc/Scc.h +444 -0
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  258. multipers-2.5.0/ext/phat/include/phat/algorithms/twist_reduction.h +51 -0
  259. multipers-2.5.0/ext/phat/include/phat/boundary_matrix.h +347 -0
  260. multipers-2.5.0/ext/phat/include/phat/compute_persistence_pairs.h +61 -0
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  265. multipers-2.5.0/ext/phat/include/phat/representations/abstract_pivot_column.h +102 -0
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  290. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/bifiltration_cell.h +47 -0
  291. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/cell_with_radius.h +18 -0
  292. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/combinatorial_bifiltration_cell.h +49 -0
  293. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_2.h +58 -0
  294. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_3.h +60 -0
  295. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/firep.h +66 -0
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  301. multipers-2.5.0/ext/rhomboidtiling_newer_cgal_version/src/rhomboid_with_radius.h +18 -0
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  311. multipers-2.5.0/multipers/_function_delaunay_interface.pyx +220 -0
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  315. multipers-2.5.0/multipers/_rhomboid_tiling_interface.pyx +94 -0
  316. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/_signed_measure_meta.py +14 -39
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  319. multipers-2.5.0/multipers/array_api/jax.py +204 -0
  320. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/array_api/numpy.py +102 -15
  321. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/array_api/torch.py +98 -11
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  358. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/vineyard_base.h +126 -20
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  363. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/mma.py +87 -49
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  422. multipers-2.4.2b1/tests/test_mma.py +0 -101
  423. multipers-2.4.2b1/tests/test_parallel.py +0 -64
  424. multipers-2.4.2b1/tests/test_point_clouds.py +0 -57
  425. multipers-2.4.2b1/tests/test_python-cpp_conversion.py +0 -82
  426. multipers-2.4.2b1/tests/test_signed_betti.py +0 -182
  427. multipers-2.4.2b1/tests/test_signed_measure.py +0 -158
  428. multipers-2.4.2b1/tests/test_simplextreemulti.py +0 -231
  429. multipers-2.4.2b1/tests/test_slicer.py +0 -370
  430. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/aida.cpp +0 -0
  431. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/birth_death.cpp +0 -0
  432. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/brute_force_mpm_decomposition.cpp +0 -0
  433. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/generate_decompositions.cpp +0 -0
  434. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/include/aida_interface.hpp +0 -0
  435. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/include/config.hpp +0 -0
  436. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/include/option_parser.hpp +0 -0
  437. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/include/types.hpp +0 -0
  438. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/making_examples.cpp +0 -0
  439. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/minimize_pres.cpp +0 -0
  440. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/mpfree_clone.cpp +0 -0
  441. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/presentation_to_quiver.cpp +0 -0
  442. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/presentation_to_quiver_new.cpp +0 -0
  443. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/resolution.cpp +0 -0
  444. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_decompose.cpp +0 -0
  445. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_decompose.hpp +0 -0
  446. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_functions.cpp +0 -0
  447. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_functions.hpp +0 -0
  448. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_helpers.cpp +0 -0
  449. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_helpers.hpp +0 -0
  450. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/aida_interface.cpp +0 -0
  451. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/block.cpp +0 -0
  452. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/block.hpp +0 -0
  453. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/config.cpp +0 -0
  454. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/src/option_parser.cpp +0 -0
  455. {multipers-2.4.2b1 → multipers-2.5.0/ext}/AIDA/vectorspace_decompositions.cpp +0 -0
  456. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/bitset_algebra.hpp +0 -0
  457. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/column_types.hpp +0 -0
  458. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/dense_matrix.hpp +0 -0
  459. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/draw_hf.hpp +0 -0
  460. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/general.hpp +0 -0
  461. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/graded_linalg.hpp +0 -0
  462. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/grid_scheduler.hpp +0 -0
  463. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/matrix_base.hpp +0 -0
  464. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/modules.hpp +0 -0
  465. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/orders_and_graphs.hpp +0 -0
  466. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/r3graded_matrix.hpp +0 -0
  467. {multipers-2.4.2b1 → multipers-2.5.0/ext}/Persistence-Algebra/include/grlina/to_quiver.hpp +0 -0
  468. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/MOL2.py +0 -0
  469. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/UCR.py +0 -0
  470. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/__init__.py +0 -0
  471. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/graphs.py +0 -0
  472. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/immuno_regions.py +0 -0
  473. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/minimal_presentation_to_st_bf.py +0 -0
  474. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/pytorch2simplextree.py +0 -0
  475. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/shape3d.py +0 -0
  476. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/data/synthetic.py +0 -0
  477. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/Simplex_tree_interface.h +0 -0
  478. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex.h +0 -0
  479. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +0 -0
  480. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +0 -0
  481. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Debug_utils.h +0 -0
  482. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field.h +0 -0
  483. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_operators.h +0 -0
  484. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_shared.h +0 -0
  485. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small.h +0 -0
  486. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +0 -0
  487. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +0 -0
  488. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Z2_field.h +0 -0
  489. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Z2_field_operators.h +0 -0
  490. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field.h +0 -0
  491. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field_operators.h +0 -0
  492. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Fields/Zp_field_shared.h +0 -0
  493. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +0 -0
  494. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_filtration/multi_filtration_utils.h +0 -0
  495. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Box.h +0 -0
  496. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Multi_parameter_filtered_complex_pcoh_interface.h +0 -0
  497. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_cohomology.h +0 -0
  498. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_vineyard.h +0 -0
  499. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Off_reader.h +0 -0
  500. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +0 -0
  501. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +0 -0
  502. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +0 -0
  503. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +0 -0
  504. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +0 -0
  505. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +0 -0
  506. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +0 -0
  507. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +0 -0
  508. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +0 -0
  509. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +0 -0
  510. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +0 -0
  511. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +0 -0
  512. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +0 -0
  513. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +0 -0
  514. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +0 -0
  515. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +0 -0
  516. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +0 -0
  517. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +0 -0
  518. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +0 -0
  519. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +0 -0
  520. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +0 -0
  521. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +0 -0
  522. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +0 -0
  523. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +0 -0
  524. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +0 -0
  525. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +0 -0
  526. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/index_mapper.h +0 -0
  527. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +0 -0
  528. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +0 -0
  529. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +0 -0
  530. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +0 -0
  531. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +0 -0
  532. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_on_a_line.h +0 -0
  533. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistence_on_rectangle.h +0 -0
  534. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +0 -0
  535. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +0 -0
  536. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +0 -0
  537. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Persistent_cohomology.h +0 -0
  538. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Points_off_io.h +0 -0
  539. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Projective_cover_kernel.h +0 -0
  540. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simple_object_pool.h +0 -0
  541. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +0 -0
  542. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +0 -0
  543. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +0 -0
  544. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +0 -0
  545. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/filtration_value_utils.h +0 -0
  546. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +0 -0
  547. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +0 -0
  548. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +0 -0
  549. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +0 -0
  550. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/Thread_safe_slicer.h +0 -0
  551. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/distance_functions.h +0 -0
  552. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/graph_simplicial_complex.h +0 -0
  553. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/multi_simplex_tree_helpers.h +0 -0
  554. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/persistence_interval.h +0 -0
  555. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/reader_utils.h +0 -0
  556. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/gudhi/slicer_helpers.h +0 -0
  557. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/tmp_h0_pers/mma_interface_h0.h +0 -0
  558. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/gudhi/tmp_h0_pers/naive_merge_tree.h +0 -0
  559. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/__init__.py +0 -0
  560. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/accuracies.py +0 -0
  561. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/invariants_with_persistable.py +0 -0
  562. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/ml/tools.py +0 -0
  563. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/diff_helpers.h +0 -0
  564. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/euler_characteristic.h +0 -0
  565. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/hilbert_function.h +0 -0
  566. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/persistence_slices.h +0 -0
  567. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multi_parameter_rank_invariant/rank_invariant.h +0 -0
  568. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_edge_collapse.py +0 -0
  569. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_module_approximation/debug.h +0 -0
  570. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/multiparameter_module_approximation/format_python-cpp.h +0 -0
  571. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/pickle.py +0 -0
  572. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/plots.py +0 -0
  573. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/tensor/tensor.h +0 -0
  574. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/tensor.pxd +0 -0
  575. {multipers-2.4.2b1 → multipers-2.5.0}/multipers/test.pyx +0 -0
@@ -0,0 +1,28 @@
1
+ cff-version: "1.2.0"
2
+ authors:
3
+ - family-names: Loiseaux
4
+ given-names: David
5
+ - family-names: Schreiber
6
+ given-names: Hannah
7
+ doi: 10.5281/zenodo.14042221
8
+ message: If you use this software, please cite our article in the
9
+ Journal of Open Source Software.
10
+ preferred-citation:
11
+ authors:
12
+ - family-names: Loiseaux
13
+ given-names: David
14
+ - family-names: Schreiber
15
+ given-names: Hannah
16
+ date-published: 2024-11-13
17
+ doi: 10.21105/joss.06773
18
+ issn: 2475-9066
19
+ issue: 103
20
+ journal: Journal of Open Source Software
21
+ publisher:
22
+ name: Open Journals
23
+ start: 6773
24
+ title: "multipers: Multiparameter Persistence for Machine Learning"
25
+ type: article
26
+ url: "https://joss.theoj.org/papers/10.21105/joss.06773"
27
+ volume: 9
28
+ title: "multipers: Multiparameter Persistence for Machine Learning"
@@ -0,0 +1,32 @@
1
+ cmake_minimum_required(VERSION 3.27)
2
+ project(multipers LANGUAGES C CXX)
3
+
4
+ if(CMAKE_GENERATOR STREQUAL "Unix Makefiles")
5
+ find_program(MULTIPERS_MAKE_PROGRAM NAMES make gmake)
6
+ if(MULTIPERS_MAKE_PROGRAM)
7
+ set(CMAKE_MAKE_PROGRAM "${MULTIPERS_MAKE_PROGRAM}" CACHE FILEPATH "Make program for Unix Makefiles" FORCE)
8
+ endif()
9
+ endif()
10
+
11
+ set(CMAKE_CXX_STANDARD 20)
12
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
13
+ set(CMAKE_POSITION_INDEPENDENT_CODE ON)
14
+ set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
15
+ set(CMAKE_COLOR_DIAGNOSTICS ON)
16
+
17
+ if(CMAKE_CXX_COMPILER_ID MATCHES "GNU|Clang")
18
+ add_compile_options(
19
+ $<$<COMPILE_LANGUAGE:C>:-fdiagnostics-color=always>
20
+ $<$<COMPILE_LANGUAGE:CXX>:-fdiagnostics-color=always>
21
+ -g0
22
+ )
23
+ endif()
24
+
25
+ if(MSVC)
26
+ add_compile_options(/bigobj)
27
+ endif()
28
+
29
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersDependencies.cmake")
30
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersCodegen.cmake")
31
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersBuild.cmake")
32
+ include("${CMAKE_SOURCE_DIR}/cmake/MultipersInstall.cmake")