multimodars 0.2.2__tar.gz → 0.2.3__tar.gz

{multimodars-0.2.2 → multimodars-0.2.3}/.github/ISSUE_TEMPLATE/bug_report.md

@@ -12,27 +12,20 @@ A clear and concise description of what the bug is.
 
 **To Reproduce**
 Steps to reproduce the behavior:
-1. Go to '...'
-2. Click on '....'
-3. Scroll down to '....'
-4. See error
+1. Load data with '...'
+2. Call function '...'
+3. See error
 
 **Expected behavior**
 A clear and concise description of what you expected to happen.
 
+**Environment (please complete the following information):**
+ - OS: [e.g. Windows, Linux, macOS]
+ - Python version: [e.g. 3.10]
+ - Package version: [e.g. 0.1.0]
+
 **Screenshots**
 If applicable, add screenshots to help explain your problem.
 
-**Desktop (please complete the following information):**
- - OS: [e.g. iOS]
- - Browser [e.g. chrome, safari]
- - Version [e.g. 22]
-
-**Smartphone (please complete the following information):**
- - Device: [e.g. iPhone6]
- - OS: [e.g. iOS8.1]
- - Browser [e.g. stock browser, safari]
- - Version [e.g. 22]
-
 **Additional context**
 Add any other context about the problem here.

{multimodars-0.2.2 → multimodars-0.2.3}/.github/PULL_REQUEST_TEMPLATE.md

@@ -1,7 +1,7 @@
 ## Pull Request Checklist
 
 - [ ] I have added tests that prove the fix is effective or that the feature works.
-- [ ] I ran `pytest` (or `nox` / your CI command) locally and all tests pass.
+- [ ] I ran `pytest` locally and all tests pass.
 - [ ] I updated `CHANGELOG.md` (or NEWS) and bumped the package version if applicable.
 - [ ] I added/updated documentation (README, docstrings, or docs).
 - [ ] This PR is linked to an issue: fixes #<issue-number> (if applicable).

{multimodars-0.2.2 → multimodars-0.2.3}/.github/workflows/CI.yml

@@ -19,6 +19,27 @@ permissions:
   contents: read
 
 jobs:
+  python-compat:
+    name: Python ${{ matrix.python-version }} compatibility
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ['3.10', '3.11', '3.12', '3.13']
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install Rust
+        uses: dtolnay/rust-toolchain@stable
+      - name: Install Python deps
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e .[test]
+      - name: Run Python tests
+        run: pytest
+
   linux:
     runs-on: ${{ matrix.platform.runner }}
     strategy:

{multimodars-0.2.2 → multimodars-0.2.3}/CHANGELOG.md

@@ -3,6 +3,21 @@
 All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](https://semver.org/).
 
+## [0.2.3] - 2026-03-06
+
+### Added
+- Type stubs for the Rust-implemented interface (via maturin)
+- `PyFrame.get_frame_at_z`: retrieve a frame by its z position
+- `PyFrame.get_frame_at_index`: retrieve a frame by its index
+- `PyFrame.replace_frame`: replace an existing frame with another
+
+### Changed
+- CI pipeline now tests against Python 3.10 through 3.13
+- Updated documentation to reflect the current interface and Python version requirements
+- Added direct download links to example data in the README and documentation
+- Migrated to modern NumPy-style type annotations throughout the Python codebase
+- All imports are now top-level across all Python modules
+
 ## [0.2.2] - 2026-03-03
 
 ### Changed

multimodars-0.2.3/CONTRIBUTING.md

@@ -0,0 +1,164 @@
+#  ✩°｡⋆ Contributing to the project ⋆｡°✩
+
+First off, thank you for considering contributing! **ദ്ദി(˵ •̀ ᴗ - ˵ ) ✧**  
+Whether you’re filing a bug, proposing a new feature, improving documentation, or refactoring code, your help makes this project better for you and the whole community.
+
+## Code of Conduct
+This project adheres to the [Contributor Covenant v2.1](https://www.contributor-covenant.org/version/2/1/code_of_conduct/).  
+By participating, you agree to respect everyone in this community. **˗ˏˋ ♡ ˎˊ˗**
+
+## Table of Contents
+
+1. [Getting Started](#getting-started)  
+2. [I Have a Question](#i-have-a-question)  
+3. [Reporting Bugs](#reporting-bugs)  
+4. [Suggesting Enhancements](#suggesting-enhancements)  
+5. [Your First Code Contribution](#your-first-code-contribution)  
+6. [Pull Request Process](#pull-request-process)  
+7. [Coding Style & Tests](#coding-style--tests)  
+8. [Writing Documentation](#writing-documentation)  
+9. [Where to Get Help](#where-to-get-help)
+
+## Getting started
+1. Fork the repo and clone your fork
+```bash
+git clone https://github.com/yungselm/multimoda-rs.git
+cd multimoda-rs
+```
+2. Create a new branch
+```bash
+git checkout -b feature/sick-feature
+```
+3. install dependencies and run tests
+```bash
+pip install -e
+pytest
+```
+## I have a Question 
+Before opening an issue:
+- Read the [Documentation](https://multimoda-rs.readthedocs.io/en/latest/index.html)
+- Search existing [Issues](https://github.com/yungselm/multimoda-rs/issues?q=is%3Aissue) 
+
+If you still need help:
+- Open a new issue: [Click here](https://github.com/yungselm/multimoda-rs/issues/new/choose)
+- Provide:
+    - A clear, descriptive title
+    - Context: what you're trying to do, expected vs. actual behaviour
+    - Project verion, OS/platform, Python version, and any relevant logs
+
+## Reporting Bugs
+If you find a bug, please help us fix it by opening a [a new issue](https://github.com/yungselm/multimoda-rs/issues/new/choose) and providing:
+- **Title**: A short descriptive title
+- **Steps to reproduce**: Minimal code snippet or sequence to trigger the bug
+- **Expected behaviour** vs **Actual behaviour**
+- **Environment**:
+    - `multimoda-rs` version
+    - Python version
+    - OS and architecture
+
+## Suggesting Enhancements
+Have an idea for a new feature or an improvement to existing behaviour? Open a [feature request issue](https://github.com/yungselm/multimoda-rs/issues/new/choose) and include:
+- **Summary**: A concise description of the enhancement
+- **Motivation**: Why would this be useful? What problem does it solve?
+- **Proposed solution**: How you envision it working (API sketch, example usage, etc.)
+- **Alternatives considered**: Other approaches you've thought about
+
+We appreciate well-scoped proposals with clear use cases.
+
+## Your First Code Contribution
+Not sure where to start? Look for issues labelled [`good first issue`](https://github.com/yungselm/multimoda-rs/issues?q=is%3Aissue+label%3A%22good+first+issue%22) or [`help wanted`](https://github.com/yungselm/multimoda-rs/issues?q=is%3Aissue+label%3A%22help+wanted%22).
+
+**Setup** (Python + Rust hybrid via [maturin](https://github.com/PyO3/maturin)):
+```bash
+# 1. Fork the repo on GitHub, then clone your fork
+git clone https://github.com/<your-username>/multimoda-rs.git
+cd multimoda-rs
+
+# 2. Create and activate a virtual environment
+python -m venv .venv
+source .venv/bin/activate   # Windows: .venv\Scripts\activate
+
+# 3. Install the package in development mode (compiles the Rust extension)
+pip install -e ".[dev]"
+
+# 4. Install pre-commit hooks
+pre-commit install
+
+# 5. Verify everything works
+pytest
+cargo test --lib
+```
+
+## Pull Request Process
+1. **Branch** – create a descriptive branch (`feature/my-feature`, `fix/issue-123`).
+2. **Commit** – write clear, atomic commit messages.
+3. **Tests** – add or update tests to cover your changes; all existing tests must pass.
+4. **Docs** – update docstrings and, if applicable, the RST docs under `docs/`.
+5. **Open the PR** – target the `main` branch. Fill in the PR template with a summary, motivation, and testing notes.
+6. **Review** – address reviewer comments; once approved and CI is green, a maintainer will merge.
+
+PRs that break existing tests or skip the pre-commit hooks will not be merged.
+
+## Coding Style & Tests
+
+### Python
+- **Formatter**: [Black](https://black.readthedocs.io/) (enforced automatically via pre-commit).
+- **Linter**: [Ruff](https://docs.astral.sh/ruff/) with `--fix` (enforced automatically via pre-commit).
+- **Docstrings**: [NumPy docstring style](https://numpydoc.readthedocs.io/en/latest/format.html).
+  Example:
+  ```python
+  def my_function(x: float, y: float) -> float:
+      """Short one-line summary.
+
+      Longer description if needed.
+
+      Parameters
+      ----------
+      x : float
+          Description of x.
+      y : float
+          Description of y.
+
+      Returns
+      -------
+      float
+          Description of the return value.
+      """
+  ```
+- **Type annotations**: use `from __future__ import annotations` at the top of every module and annotate all public functions and methods.
+- **Tests**: place tests under `tests/` and use [pytest](https://docs.pytest.org/). Run with `pytest`.
+
+### Rust
+- **Formatter**: `cargo fmt --all` (enforced automatically via pre-commit).
+- **Tests**: unit tests live alongside the source (`#[cfg(test)]` blocks). Run with `cargo test --lib`.
+
+All checks are wired up via pre-commit and run automatically on every commit. You can also run them manually:
+```bash
+pre-commit run --all-files
+```
+
+## Writing Documentation
+Documentation lives under `docs/` and is built with [Sphinx](https://www.sphinx-doc.org/).
+
+- Public API is documented via **NumPy-style docstrings** (see above) — Sphinx picks these up automatically.
+- Narrative docs (tutorials, how-tos) go in `.rst` files under `docs/`.
+- Build locally with:
+  ```bash
+  cd docs
+  make html
+  # open _build/html/index.html in your browser
+  ```
+- Keep prose clear and concise. Include runnable code examples where possible.
+
+## Where to Get Help
+| Channel | When to use |
+|---------|-------------|
+| [Documentation](https://multimoda-rs.readthedocs.io/en/latest/index.html) | First stop, API reference and tutorials |
+| [GitHub Issues](https://github.com/yungselm/multimoda-rs/issues) | Bug reports and feature requests |
+| [GitHub Discussions](https://github.com/yungselm/multimoda-rs/discussions) | Questions, ideas, and general discussion |
+
+When asking for help, please include your `multimoda-rs` version, Python version, OS, and a minimal reproducible example.
+
+
+**ฅ^>⩊<^ ฅ**
+------------------------------------------------------------------------------------

{multimodars-0.2.2 → multimodars-0.2.3}/Cargo.lock

@@ -726,7 +726,7 @@ dependencies = [
 
 [[package]]
 name = "multimodars"
-version = "0.2.2"
+version = "0.2.3"
 dependencies = [
  "anyhow",
  "approx",

{multimodars-0.2.2 → multimodars-0.2.3}/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "multimodars"
-version = "0.2.2"
+version = "0.2.3"
 edition = "2021"
 license = "MIT"
 readme = "README.md"

{multimodars-0.2.2 → multimodars-0.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: multimodars
-Version: 0.2.2
+Version: 0.2.3
 Classifier: Programming Language :: Rust
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Programming Language :: Python :: Implementation :: PyPy
@@ -24,7 +24,7 @@ License-File: LICENSE
 Summary: A Rust-powered cardiac multi-image modality fusion package
 Author: Anselm W. Stark
 License-Expression: MIT
-Requires-Python: >=3.8
+Requires-Python: >=3.10
 Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
 Project-URL: Homepage, https://github.com/yungselm/multimoda-rs
 Project-URL: Issues, https://github.com/yungselm/multimoda-rs/issues
@@ -71,7 +71,7 @@ Project-URL: Issues, https://github.com/yungselm/multimoda-rs/issues
 - Centerline Alignment
   - Align registered geometries onto a vessel centerline using three‑point or manual rotation methods.
 - Geometry Utilities
-  - Smooth contours, reorder frames to minimize spatial and index jumps, compute areas and elliptic ratios, find farthest/closest point pairs, and more.
+  - Smooth contours, compute areas and elliptic ratios, find farthest/closest point pairs, and more.
 
 ## Installation
 
@@ -106,7 +106,8 @@ maturin develop
 
 
 ## Quickstart Example
-Download the example data from the latest release and place it in your working directory. A Jupyter Notebook with step-by-step examples is available at `examples/ivus_to_centerline.ipynb`.
+Download [examples.zip](https://github.com/yungselm/multimoda-rs/releases/latest/download/examples.zip) (SHA256: `d11ebc7607f43ab4571fb51c9ac9178caac57774cf5d97f4f068ace4eb070fee`) from the latest release and place it in your working directory. A Jupyter Notebook with step-by-step examples is available at `examples/ivus_to_centerline.ipynb`.
+Provided you extraced examples to the project root you can just copy paste the below example to ensure proper setup:
 
 ```python
 import multimodars as mm
@@ -114,8 +115,8 @@ import numpy as np
 
 # IVUS pullbacks: full alignment of rest/stress & diastole/systole
 rest, stress, dia, sys, _ = mm.from_file_full(
-    input_path_a="ivus_rest",
-    input_path_b="ivus_stress",
+    input_path_a="examples/data/ivus_rest",
+    input_path_b="examples/data/ivus_stress",
     label="full",
     step_rotation_deg=0.1,
     range_rotation_deg=90,
@@ -128,12 +129,12 @@ rest, stress, dia, sys, _ = mm.from_file_full(
     output_path_b="output/stress",
     output_path_c="output/diastole",
     output_path_d="output/systole",
-    interpolation_steps=28,
+    interpolation_steps=0,
     contour_types=[mm.PyContourType.Lumen, mm.PyContourType.Catheter, mm.PyContourType.Wall]
 )
 
 # Load raw centerline and align geometry onto it
-cl_raw = np.genfromtxt("centerline_raw.csv", delimiter=",")
+cl_raw = np.genfromtxt("examples/data/centerline_raw.csv", delimiter=",")
 centerline = mm.numpy_to_centerline(cl_raw)
 
 aligned_pair, cl_resampled = mm.align_three_point(

{multimodars-0.2.2 → multimodars-0.2.3}/README.md

@@ -40,7 +40,7 @@
 - Centerline Alignment
   - Align registered geometries onto a vessel centerline using three‑point or manual rotation methods.
 - Geometry Utilities
-  - Smooth contours, reorder frames to minimize spatial and index jumps, compute areas and elliptic ratios, find farthest/closest point pairs, and more.
+  - Smooth contours, compute areas and elliptic ratios, find farthest/closest point pairs, and more.
 
 ## Installation
 
@@ -75,7 +75,8 @@ maturin develop
 
 
 ## Quickstart Example
-Download the example data from the latest release and place it in your working directory. A Jupyter Notebook with step-by-step examples is available at `examples/ivus_to_centerline.ipynb`.
+Download [examples.zip](https://github.com/yungselm/multimoda-rs/releases/latest/download/examples.zip) (SHA256: `d11ebc7607f43ab4571fb51c9ac9178caac57774cf5d97f4f068ace4eb070fee`) from the latest release and place it in your working directory. A Jupyter Notebook with step-by-step examples is available at `examples/ivus_to_centerline.ipynb`.
+Provided you extraced examples to the project root you can just copy paste the below example to ensure proper setup:
 
 ```python
 import multimodars as mm
@@ -83,8 +84,8 @@ import numpy as np
 
 # IVUS pullbacks: full alignment of rest/stress & diastole/systole
 rest, stress, dia, sys, _ = mm.from_file_full(
-    input_path_a="ivus_rest",
-    input_path_b="ivus_stress",
+    input_path_a="examples/data/ivus_rest",
+    input_path_b="examples/data/ivus_stress",
     label="full",
     step_rotation_deg=0.1,
     range_rotation_deg=90,
@@ -97,12 +98,12 @@ rest, stress, dia, sys, _ = mm.from_file_full(
     output_path_b="output/stress",
     output_path_c="output/diastole",
     output_path_d="output/systole",
-    interpolation_steps=28,
+    interpolation_steps=0,
     contour_types=[mm.PyContourType.Lumen, mm.PyContourType.Catheter, mm.PyContourType.Wall]
 )
 
 # Load raw centerline and align geometry onto it
-cl_raw = np.genfromtxt("centerline_raw.csv", delimiter=",")
+cl_raw = np.genfromtxt("examples/data/centerline_raw.csv", delimiter=",")
 centerline = mm.numpy_to_centerline(cl_raw)
 
 aligned_pair, cl_resampled = mm.align_three_point(

multimodars-0.2.3/docs/api/adjust_ccta.rst

@@ -0,0 +1,9 @@
+Adjust CCTA
+===========
+
+.. autofunction:: multimodars.ccta.adjust_ccta.label_geometry
+.. autofunction:: multimodars.ccta.adjust_ccta.label_anomalous_region
+.. autofunction:: multimodars.ccta.adjust_ccta.scale_region_centerline_morphing
+.. autofunction:: multimodars.ccta.adjust_ccta.compare_centerline_scaling
+.. autofunction:: multimodars.ccta.adjust_ccta.find_distal_and_proximal_scaling
+.. autofunction:: multimodars.ccta.adjust_ccta.find_aorta_scaling

{multimodars-0.2.2 → multimodars-0.2.3}/docs/api/centerline.rst

@@ -2,4 +2,5 @@ Centerline Functions
 ====================
 
 .. autofunction:: multimodars.align_three_point
-.. autofunction:: multimodars.align_manual
+.. autofunction:: multimodars.align_manual
+.. autofunction:: multimodars.align_combined

{multimodars-0.2.2 → multimodars-0.2.3}/docs/api/classes/PyContour.rst

@@ -9,4 +9,4 @@ PyContour
    :undoc-members:
    :show-inheritance:
    :inherited-members:
-   :exclude-members: id, original_frame, points, centroid, kind
+   :exclude-members: id, original_frame, points, centroid, kind, aortic_thickness, pulmonary_thickness

{multimodars-0.2.2 → multimodars-0.2.3}/docs/api/classes/PyGeometryPair.rst

@@ -9,4 +9,4 @@ PyGeometryPair
    :undoc-members:
    :show-inheritance:
    :inherited-members:
-   :exclude-members: geom_a, geom_b
+   :exclude-members: geom_a, geom_b, label

multimodars-0.2.3/docs/api/converters_and_wrappers.rst

@@ -0,0 +1,9 @@
+Converters
+==========
+
+.. autofunction:: multimodars._converters.to_array
+.. autofunction:: multimodars._converters.numpy_to_inputdata
+.. autofunction:: multimodars._converters.numpy_to_geometry
+.. autofunction:: multimodars._converters.numpy_to_centerline
+.. autofunction:: multimodars._converters.array_to_pyinputdata
+.. autofunction:: multimodars._converters.geometry_to_frames_array

{multimodars-0.2.2 → multimodars-0.2.3}/docs/api/index.rst

@@ -10,4 +10,5 @@ API Reference
    processing
    centerline
    utilities
-   converters_and_wrappers
+   converters_and_wrappers
+   adjust_ccta

{multimodars-0.2.2 → multimodars-0.2.3}/docs/installation.rst

@@ -14,7 +14,7 @@ Pre-built binaries are available on PyPI for installation via pip. For the pytho
 mentioned below, wheels are automatically generated for each release of ``multimodars``, allowing you to
 install multimodars without having to compile anything.
 
-* Ensure that you have ``python`` installed on your machine, version 3.12 or higher (64-bits).
+* Ensure that you have ``python`` installed on your machine, version 3.10 or higher (64-bits).
 
 * Install multimodars::
 

{multimodars-0.2.2 → multimodars-0.2.3}/docs/tutorial_ccta.rst

@@ -1,9 +1,14 @@
 
 .. note::
 
-    Also download the example data and jupyter notebooks from the current release from the
-    `Github Releases page <https://github.com/yungselm/multimoda-rs/releases>`_ to follow
-    this tutorial step-by-step.
+    Also download the example data and jupyter notebooks to follow this tutorial step-by-step.
+    Use the direct download link:
+    `examples.zip <https://github.com/yungselm/multimoda-rs/releases/latest/download/examples.zip>`_
+    (SHA256: ``d11ebc7607f43ab4571fb51c9ac9178caac57774cf5d97f4f068ace4eb070fee``)
+
+    Alternatively, browse all releases on the
+    `Github Releases page <https://github.com/yungselm/multimoda-rs/releases>`_.
+    Specifically, the test_adjust_ccta.py allows you to also display the trimesh debug plots.
 
 Tutorial - CCTA Module
 =======================
@@ -25,10 +30,10 @@ that combines both steps, and performs several checks. Additionally is the geome
     import multimodars as mm
 
     results, (rca_cl, lca_cl, ao_cl) = mm.label_geometry(
-        path_ccta_geometry="../data/NARCO_119.stl",
-        path_centerline_aorta="../data/centerline_aorta.csv",
-        path_centerline_rca="../data/centerline_rca.csv",
-        path_centerline_lca="../data/centerline_lca.csv",
+        path_ccta_geometry="data/NARCO_119.stl",
+        path_centerline_aorta="data/centerline_aorta.csv",
+        path_centerline_rca="data/centerline_rca.csv",
+        path_centerline_lca="data/centerline_lca.csv",
         bounding_sphere_radius_mm=3.5, # rolling sphere radius for initial vessel labeling
         n_points_intramural=200, # points centerline to define end of intramural section, if unsure keep large
         anomalous_rca=True, # cleans wrongly labeled points intramural part

{multimodars-0.2.2 → multimodars-0.2.3}/docs/tutorial_intravascular.rst

@@ -1,9 +1,13 @@
 
 .. note::
 
-    Download the example data and jupyter notebooks from the current release from the
-    `Github Releases page <https://github.com/yungselm/multimoda-rs/releases>`_ to follow
-    this tutorial step-by-step.
+    Also download the example data and jupyter notebooks to follow this tutorial step-by-step.
+    Use the direct download link:
+    `examples.zip <https://github.com/yungselm/multimoda-rs/releases/latest/download/examples.zip>`_
+    (SHA256: ``d11ebc7607f43ab4571fb51c9ac9178caac57774cf5d97f4f068ace4eb070fee``)
+
+    Alternatively, browse all releases on the
+    `Github Releases page <https://github.com/yungselm/multimoda-rs/releases>`_.
 
 Tutorial - Intravascular Module
 ================================
@@ -99,52 +103,28 @@ For a single pair (e.g. only diastole/systole of one state) the simpler function
 
 2. Workflow numpy arrays and Finetuning
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Here the geometry can be directly built from arrays with the same structure as before.
-``numpy_to_geometry`` accepts ``lumen_arr``, ``eem_arr``, ``catheter_arr``, ``wall_arr`` and ``reference_arr``:
+To call ``from_array_singlepair`` the contours and reference point from the geometry must be packed into
+a ``PyInputData`` object first. We assume that ``before_arr``, ``after_arr``, ``before_ref`` and ``after_arr``
+are all Numpy arrays with N(4, ) shape:
 
 .. code-block:: python
 
-    before_geom = mm.numpy_to_geometry(
+    before_input_data = mm.numpy_to_inputdata(
         lumen_arr=before_arr,
-        eem_arr=np.array([]),
-        catheter_arr=np.array([]),
-        wall_arr=np.array([]),
-        reference_arr=before_ref,
+        ref_point=before_ref,
+        record=None,
+        diastole=True,
+        label="prestent",
     )
 
-    after_geom = mm.numpy_to_geometry(
+    after_input_data = mm.numpy_to_inputdata(
         lumen_arr=after_arr,
-        eem_arr=np.array([]),
-        catheter_arr=np.array([]),
-        wall_arr=np.array([]),
-        reference_arr=after_ref,
-    )
-
-To call ``from_array_singlepair`` the contours and reference point from the geometry must be packed into
-a ``PyInputData`` object first:
-
-.. code-block:: python
-
-    contours = []
-    ref_pt = None
-    for frame in before_geom.frames:
-        contours.append(frame.lumen)
-        if frame.reference_point is not None:
-            ref_pt = frame.reference_point
-
-    before_input_data = mm.PyInputData(
-        lumen=contours,
-        eem=None,
-        calcification=None,
-        sidebranch=None,
+        ref_point=after_ref,
         record=None,
-        ref_point=ref_pt,
         diastole=True,
-        label="before"
+        label="poststent",
     )
 
-    # repeat for after_input_data ...
-
     pair, _ = mm.from_array_singlepair(
         input_data_a=before_input_data,
         input_data_b=after_input_data,

{multimodars-0.2.2 → multimodars-0.2.3}/multimodars/__init__.py

@@ -1,16 +1,37 @@
 from __future__ import annotations
 
-from .multimodars import *
+from .multimodars import (
+    PyContourPoint,
+    PyContour,
+    PyFrame,
+    PyGeometry,
+    PyGeometryPair,
+    PyCenterline,
+    PyCenterlinePoint,
+    PyInputData,
+    PyRecord,
+    PyContourType,
+    from_file_full,
+    from_file_doublepair,
+    from_file_singlepair,
+    from_file_single,
+    from_array_full,
+    from_array_doublepair,
+    from_array_singlepair,
+    from_array_single,
+    align_three_point,
+    align_manual,
+    align_combined,
+    to_obj,
+    find_centerline_bounded_points_simple,
+    find_proximal_distal_scaling,
+)
 from ._converters import (
     to_array,
     numpy_to_geometry,
     numpy_to_centerline,
     numpy_to_inputdata,
 )
-from ._wrappers import (
-    from_file,
-    from_array,
-)
 from .io import read_geometrical, write_geometries
 from .ccta.adjust_ccta import (
     label_geometry,
@@ -37,9 +58,6 @@ __all__ = [
     "numpy_to_geometry",
     "numpy_to_centerline",
     "numpy_to_inputdata",
-    # Wrapper functions
-    "from_file",
-    "from_array",
     # Processing functions (from Rust)
     "from_file_full",
     "from_file_doublepair",
@@ -51,9 +69,13 @@ __all__ = [
     "from_array_single",
     "align_three_point",
     "align_manual",
+    "align_combined",
     "to_obj",
     "find_centerline_bounded_points_simple",
     "find_proximal_distal_scaling",
+    # I/O
+    "read_geometrical",
+    "write_geometries",
     # CCTA module
     "label_geometry",
     "label_anomalous_region",