mtlearn 1.2.1__tar.gz → 1.2.2__tar.gz

{mtlearn-1.2.1 → mtlearn-1.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: mtlearn
-Version: 1.2.1
+Version: 1.2.2
 Summary: Morphological tree learning utilities with a stable morphology facade
 Author-Email: Wonder Alexandre Luz Alves <worderalexandre@gmail.com>
 License-Expression: GPL-3.0-only

{mtlearn-1.2.1 → mtlearn-1.2.2}/mtlearn/python/mtlearn/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '1.2.1'
-__version_tuple__ = version_tuple = (1, 2, 1)
+__version__ = version = '1.2.2'
+__version_tuple__ = version_tuple = (1, 2, 2)
 
-__commit_id__ = commit_id = 'g1d6f21bf0'
+__commit_id__ = commit_id = 'g218d9dab2'

{mtlearn-1.2.1 → mtlearn-1.2.2}/mtlearn/python/mtlearn/layers/cfp/preparation/_disk_preparation.py

@@ -4,7 +4,7 @@ from pathlib import Path
 import shutil
 
 from ..storage import DiskStore
-from ._identity import canonical_json, preprocessor_config, validate_identity, tree_config
+from ._identity import canonical_json, compatibility_config, preprocessor_config, validate_identity, tree_config
 from ._persistent_preparation import statistics_contract, statistics_identity
 from .preparation_result import DiskPreparationResult
 
@@ -78,7 +78,9 @@ def _header(store, preprocessor, manifest, source_version, preprocessing_version
                 "preprocessing_version": preprocessing_version, "split": split}
     if count is not None:
         expected["sample_count"] = count
-    differences = [name for name, value in expected.items() if row[name] != value]
+    differences = [name for name, value in expected.items()
+                   if (compatibility_config(json.loads(row[name])) != compatibility_config(json.loads(value))
+                       if name == "config" else row[name] != value)]
     if differences:
         raise ValueError(f"Manifest {manifest!r} is incompatible: {', '.join(differences)} changed. "
                          "Use the matching contract or a new manifest name; cache metadata must not be rewritten.")

{mtlearn-1.2.1 → mtlearn-1.2.2}/mtlearn/python/mtlearn/layers/cfp/preparation/_identity.py

@@ -1,11 +1,8 @@
 """Versioned, primitive-only identities for local persistent preparation."""
-from functools import lru_cache
 import hashlib
 import json
-from pathlib import Path
 
 from .... import morphology
-from ...._native import load_bindings
 from ..specs import FeatureSpec, TreeSpec
 
 FORMAT_VERSION = 4
@@ -24,12 +21,20 @@ def digest_file(path):
     return digest.hexdigest()
 
 
-@lru_cache(maxsize=1)
 def implementation_identity():
-    # Binary identity is deliberately conservative across backend builds. The
-    # semantic version must change when Python preparation/quantization changes.
-    return {"semantics": PREPARATION_SEMANTICS,
-            "native_sha256": digest_file(Path(load_bindings().__file__))}
+    return {"semantics": PREPARATION_SEMANTICS}
+
+
+def compatible_implementation(implementation):
+    return (isinstance(implementation, dict)
+            and set(implementation) in ({"semantics"}, {"semantics", "native_sha256"})
+            and implementation["semantics"] == PREPARATION_SEMANTICS)
+
+
+def compatibility_config(config):
+    if not isinstance(config, dict) or not compatible_implementation(config.get("implementation")):
+        raise ValueError("Incompatible persistent preparation implementation or format.")
+    return dict(config, implementation=implementation_identity())
 
 
 def tree_config(spec):
@@ -55,7 +60,8 @@ def preprocessor_config(preprocessor):
     from .cfp_preprocessor import CFPPreprocessor
     if type(preprocessor) is not CFPPreprocessor or preprocessor.morphology is not morphology:
         raise ValueError("Persistent preparation currently requires the standard CFPPreprocessor implementation.")
-    return {"format_version": FORMAT_VERSION, "implementation": dict(implementation_identity()),
+    implementation = getattr(preprocessor, "_implementation", implementation_identity())
+    return {"format_version": FORMAT_VERSION, "implementation": dict(implementation),
             "attribute_dtype": preprocessor.attribute_dtype.name,
             "trees": [{"tree": tree_config(spec),
                        "attributes": [a.name for a in preprocessor.features[key].attributes]}
@@ -64,14 +70,16 @@ def preprocessor_config(preprocessor):
 
 def preprocessor_from_config(config):
     from .cfp_preprocessor import CFPPreprocessor
-    if config["format_version"] != FORMAT_VERSION or config["implementation"] != implementation_identity():
+    if config["format_version"] != FORMAT_VERSION or not compatible_implementation(config["implementation"]):
         raise ValueError("Incompatible persistent preparation implementation or format.")
     trees, features = {}, {}
     for entry in config["trees"]:
         tree = tree_from_config(entry["tree"])
         trees[tree.cache_key()] = tree
         features[tree.cache_key()] = FeatureSpec(tuple(getattr(morphology.AttributeType, a) for a in entry["attributes"]))
-    return CFPPreprocessor(tree_specs=trees, features=features, attribute_dtype=config["attribute_dtype"])
+    preprocessor = CFPPreprocessor(tree_specs=trees, features=features, attribute_dtype=config["attribute_dtype"])
+    preprocessor._implementation = dict(config["implementation"])
+    return preprocessor
 
 
 def image_identity(preprocessor, image, tree_key, *, pixel_digest=None):
@@ -91,7 +99,7 @@ def validate_identity(identity):
     expected = {"format_version", "implementation", "pixels_sha256", "shape", "tree", "attributes", "attribute_dtype"}
     if set(identity) != expected or identity["format_version"] != FORMAT_VERSION:
         raise ValueError("Unsupported preparation identity format.")
-    if identity["implementation"] != implementation_identity():
+    if not compatible_implementation(identity["implementation"]):
         raise ValueError("Preparation backend/semantics do not match this runtime.")
     digest = identity["pixels_sha256"]
     if not isinstance(digest, str) or len(digest) != 64 or any(c not in "0123456789abcdef" for c in digest):

{mtlearn-1.2.1 → mtlearn-1.2.2}/mtlearn/python/mtlearn/layers/cfp/preparation/_persistent_preparation.py

@@ -10,7 +10,7 @@ from ..._helpers import to_numpy_u8
 from ..normalization import AttributeNormalizer
 from ..normalization.statistics_snapshot import StatisticsSnapshot
 from ..runtime.cache_input_contract import validate_cfp_cache_batch_x
-from ._identity import canonical_json, image_identity, identity_key, preprocessor_config, preprocessor_from_config
+from ._identity import canonical_json, compatibility_config, image_identity, identity_key, preprocessor_config, preprocessor_from_config
 from .preparation_result import PreparationResult
 from ._preparation_progress import emit
 
@@ -63,13 +63,19 @@ def _begin_manifest(store, name, preprocessor, count, source_version, preprocess
     if any(not isinstance(v, str) or not v for v in (name, source_version, preprocessing_version)):
         raise ValueError("Persistent preparation requires manifest, source_version and preprocessing_version strings.")
     config = canonical_json(preprocessor_config(preprocessor))
-    values = (config, source_version, preprocessing_version, split, count)
     row = store._db.execute("SELECT * FROM manifests WHERE name=?", (name,)).fetchone()
+    if row is not None:
+        previous = json.loads(row["config"])
+        if compatibility_config(previous) == compatibility_config(json.loads(config)):
+            preprocessor = preprocessor_from_config(previous)
+            config = row["config"]
+    values = (config, source_version, preprocessing_version, split, count)
     if row is not None and tuple(row[k] for k in ("config", "source_version", "preprocessing_version", "split", "sample_count")) != values:
         raise ValueError("Manifest contract/source version changed; use a new manifest name to reuse compatible content safely.")
     with store._db:
         store._db.execute("""INSERT INTO manifests VALUES (?,?,?,?,?,?,'preparing',NULL)
             ON CONFLICT(name) DO UPDATE SET state='preparing',error=NULL""", (name, *values))
+    return preprocessor
 
 
 def _bind_sample(store, name, position, sample_id, bindings, shape):
@@ -146,7 +152,7 @@ def prepare_source(preprocessor, source, *, store=None, manifest=None, source_ve
     persistent = getattr(store, "persistent", False)
     if persistent:
         store._check(write=True)
-        _begin_manifest(store, manifest, preprocessor, count, source_version, preprocessing_version, split)
+        preprocessor = _begin_manifest(store, manifest, preprocessor, count, source_version, preprocessing_version, split)
         # A resumed pass must revalidate durable files, even if this process has
         # already borrowed valid CPU buffers from a now damaged/missing file.
         store.clear()

{mtlearn-1.2.1 → mtlearn-1.2.2}/mtlearn/python/mtlearn/layers/cfp/storage/_manifest.py

@@ -2,7 +2,7 @@
 import json
 import sqlite3
 
-from ..preparation._identity import FORMAT_VERSION, canonical_json, implementation_identity
+from ..preparation._identity import FORMAT_VERSION, canonical_json, implementation_identity, compatible_implementation
 
 SCHEMA = """
 CREATE TABLE metadata (key TEXT PRIMARY KEY, value TEXT NOT NULL);
@@ -55,7 +55,10 @@ def connect(path, *, readonly):
                 db.rollback()
                 raise
         row = db.execute("SELECT value FROM metadata WHERE key='contract'").fetchone()
-        if row is None or json.loads(row[0]) != expected:
+        contract = json.loads(row[0]) if row is not None else None
+        if (not isinstance(contract, dict) or set(contract) != set(expected)
+                or contract["format_version"] != FORMAT_VERSION
+                or not compatible_implementation(contract["implementation"])):
             raise ValueError("DiskStore format/backend is incompatible; use a separate store directory.")
     except BaseException:
         db.close()

mtlearn-1.2.2/mtlearn/tests/python/test_cfp_cache_compatibility.py

@@ -0,0 +1,101 @@
+import json
+
+import numpy as np
+import pytest
+import torch
+
+import mtlearn
+from mtlearn import _native
+from mtlearn.layers.cfp import CFPPreprocessor, DiskStore, PreparedDataset
+from mtlearn.layers.cfp.preparation import _identity
+from test_cfp_disk_cache import QUOTA, forbid, model, prepare
+
+
+@pytest.mark.parametrize("legacy", [False, True])
+@pytest.mark.parametrize("workers", [0, 1])
+def test_cache_reuse_across_binary_and_package_versions(tmp_path, monkeypatch, legacy, workers):
+    preprocessor = CFPPreprocessor.from_layer(model())
+    source = [torch.tensor([[[0, 1], [2, 3]]], dtype=torch.uint8)]
+    current = _identity.implementation_identity
+    with monkeypatch.context() as previous:
+        if legacy:
+            previous.setattr(_identity, "implementation_identity", lambda: dict(current(), native_sha256="a" * 64))
+        previous.setattr(mtlearn, "__version__", "1.2.0")
+        with DiskStore(tmp_path, max_disk_bytes=QUOTA) as store:
+            prepare(preprocessor, source, store)
+            config = json.loads(store._db.execute("SELECT config FROM manifests").fetchone()[0])
+            entries = [tuple(row) for row in store._db.execute("SELECT * FROM entries")]
+            expected = PreparedDataset(store, "train", source)[0]
+            expected_attributes = next(iter(expected.samples[0][0].values())).raw_attributes
+            expected_attributes = {key: value.clone() for key, value in expected_attributes.items()}
+            del expected
+    files = {path: path.read_bytes() for path in tmp_path.rglob("*.pt")}
+    assert files
+    monkeypatch.setattr(mtlearn, "__version__", "1.2.1")
+    monkeypatch.setattr(_native, "load_bindings", forbid)
+    monkeypatch.setattr(CFPPreprocessor, "prepare_u8", forbid)
+    assert _identity.implementation_identity() == {"semantics": _identity.PREPARATION_SEMANTICS}
+    assert CFPPreprocessor.from_config(config).get_config() == config
+    for readonly in (True, False):
+        with DiskStore(tmp_path, readonly=readonly, max_disk_bytes=None if readonly else QUOTA) as store:
+            batch = PreparedDataset(store, "train", source)[0]
+            actual = next(iter(batch.samples[0][0].values())).raw_attributes
+            for key in expected_attributes:
+                torch.testing.assert_close(actual[key], expected_attributes[key])
+            del batch, actual
+            if not readonly:
+                assert prepare(preprocessor, source, store, num_workers=workers).status == "complete"
+            assert [tuple(row) for row in store._db.execute("SELECT * FROM entries")] == entries
+    result = preprocessor.prepare_or_reuse(path=tmp_path, manifest="train", source_version="source-v1",
+        preprocessing_version="uint8-v1", mode="reuse")
+    assert result.status == "complete"
+    assert result.prepared_entries == 0
+    assert {path: path.read_bytes() for path in files} == files
+
+
+@pytest.mark.parametrize("field,value", [("semantics", "incompatible-preparation"), ("unknown", "value")])
+def test_incompatible_implementation_rejected_at_all_boundaries(tmp_path, field, value):
+    preprocessor = CFPPreprocessor.from_layer(model())
+    config = preprocessor.get_config()
+    config["implementation"][field] = value
+    with pytest.raises(ValueError, match="Incompatible"):
+        CFPPreprocessor.from_config(config)
+    identity = _identity.image_identity(preprocessor, np.array([[0, 1]], dtype=np.uint8),
+                                       next(iter(preprocessor.tree_specs)))
+    identity["implementation"][field] = value
+    with pytest.raises(ValueError, match="backend/semantics"):
+        _identity.validate_identity(identity)
+    with DiskStore(tmp_path, max_disk_bytes=QUOTA) as store:
+        store._db.execute("UPDATE metadata SET value=? WHERE key='contract'", (_identity.canonical_json({
+            "format_version": _identity.FORMAT_VERSION, "implementation": config["implementation"]}),))
+        store._db.commit()
+    with pytest.raises(ValueError, match="incompatible"):
+        DiskStore(tmp_path, readonly=True)
+
+
+@pytest.mark.parametrize("workers", [0, 1])
+def test_resume_legacy_cache_preserves_original_keys(tmp_path, monkeypatch, workers):
+    preprocessor = CFPPreprocessor.from_layer(model())
+    source = [torch.tensor([[[0, 1], [2, 3]]], dtype=torch.uint8),
+              torch.tensor([[[3, 2], [0, 1]]], dtype=torch.uint8)]
+    current = _identity.implementation_identity
+    with monkeypatch.context() as previous:
+        previous.setattr(_identity, "implementation_identity", lambda: dict(current(), native_sha256="b" * 64))
+        with DiskStore(tmp_path, max_disk_bytes=QUOTA) as store:
+            result = prepare(preprocessor, source, store,
+                cancel=lambda: store._db.execute("SELECT count(*) FROM samples").fetchone()[0] == 1)
+            assert result.status == "cancelled"
+            config = json.loads(store._db.execute("SELECT config FROM manifests").fetchone()[0])
+            key = store._db.execute("SELECT key FROM entries").fetchone()[0]
+    result = preprocessor.prepare_or_reuse(source, path=tmp_path, manifest="train", source_version="source-v1",
+        preprocessing_version="uint8-v1", mode="prepare_missing", max_disk_bytes=QUOTA, num_workers=workers)
+    assert result.status == "complete"
+    with DiskStore(tmp_path, readonly=True) as store:
+        assert json.loads(store._db.execute("SELECT config FROM manifests").fetchone()[0]) == config
+        assert store.get(key) is not None
+        dataset = PreparedDataset(store, "train", source)
+        assert len(dataset) == 2
+        for index in range(len(dataset)):
+            assert dataset[index].shape == (1, 1, 2, 2)
+        for row in store._db.execute("SELECT identity FROM entries"):
+            assert json.loads(row[0])["implementation"] == config["implementation"]