mt-metadata 0.3.7__tar.gz → 0.3.9__tar.gz

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/HISTORY.rst

@@ -191,3 +191,11 @@ History
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/221
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/223
 * Bump version: 0.3.6 → 0.3.7 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/225 
+
+0.3.8 (2024-09-30)
+----------------------
+
+* Add pop to ListDict by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/226
+* Fix EDI Tipper flip by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/228
+* Patches by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/227
+* Bump version: 0.3.7 → 0.3.8 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/229 

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: mt_metadata
-Version: 0.3.7
+Version: 0.3.9
 Summary: Metadata for magnetotelluric data
 Home-page: https://github.com/kujaku11/mt_metadata
 Author: Jared Peacock
@@ -22,7 +22,7 @@ Description-Content-Type: text/markdown
 License-File: LICENSE
 License-File: AUTHORS.rst
 
-# mt_metadata version 0.3.7
+# mt_metadata version 0.3.9
  Standard MT metadata
 
 [![PyPi version](https://img.shields.io/pypi/v/mt_metadata.svg)](https://pypi.python.org/pypi/mt-metadata)
@@ -52,7 +52,7 @@ MT Metadata is a project led by [IRIS-PASSCAL MT Software working group](https:/
 
 Most people will be using the transfer functions, but a lot of that metadata comes from the time series metadata.  This module supports both and has tried to make them more or less seamless to reduce complication.
 
-* **Version**: 0.3.7
+* **Version**: 0.3.9
 * **Free software**: MIT license
 * **Documentation**: https://mt-metadata.readthedocs.io.
 * **Examples**: Click the `Binder` badge above and Jupyter Notebook examples are in **mt_metadata/examples/notebooks** and **docs/source/notebooks**
@@ -420,3 +420,11 @@ History
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/221
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/223
 * Bump version: 0.3.6 → 0.3.7 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/225 
+
+0.3.8 (2024-09-30)
+----------------------
+
+* Add pop to ListDict by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/226
+* Fix EDI Tipper flip by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/228
+* Patches by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/227
+* Bump version: 0.3.7 → 0.3.8 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/229 

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/README.md

@@ -1,4 +1,4 @@
-# mt_metadata version 0.3.7
+# mt_metadata version 0.3.9
  Standard MT metadata
 
 [![PyPi version](https://img.shields.io/pypi/v/mt_metadata.svg)](https://pypi.python.org/pypi/mt-metadata)
@@ -28,7 +28,7 @@ MT Metadata is a project led by [IRIS-PASSCAL MT Software working group](https:/
 
 Most people will be using the transfer functions, but a lot of that metadata comes from the time series metadata.  This module supports both and has tried to make them more or less seamless to reduce complication.
 
-* **Version**: 0.3.7
+* **Version**: 0.3.9
 * **Free software**: MIT license
 * **Documentation**: https://mt-metadata.readthedocs.io.
 * **Examples**: Click the `Binder` badge above and Jupyter Notebook examples are in **mt_metadata/examples/notebooks** and **docs/source/notebooks**

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/__init__.py

@@ -39,7 +39,7 @@ you should only have to changes these dictionaries.
 
 __author__ = """Jared Peacock"""
 __email__ = "jpeacock@usgs.gov"
-__version__ = "0.3.7"
+__version__ = "0.3.9"
 
 # =============================================================================
 # Imports

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/data/transfer_functions/test.edi

@@ -191,20 +191,20 @@
    4.200000e-04   3.400000e-04
 >!****IMPEDANCE ROTATION ANGLES****!
 >ZROT // 80
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00
 >!****IMPEDANCES****!
 >ZXXR ROT=ZROT // 80
   -2.476323e-02  -3.056975e-02  -3.186906e-02  -2.062529e-02  -1.577238e-02  -6.750678e-03
@@ -388,20 +388,20 @@
    3.180702e-03   3.179844e-03
 >!****TIPPER ROTATION ANGLES****!
 >TROT // 80
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00   0.000000e+00
-   0.000000e+00   0.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00   5.000000e+00
+   5.000000e+00   5.000000e+00
 >!****TIPPER****!
 >TXR.EXP ROT=TROT // 80
   -2.867413e+02  -2.586491e+02  -2.495227e+02  -2.326995e+02  -2.074678e+02  -1.833140e+02

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/timeseries/stationxml/xml_channel_mt_channel.py

@@ -592,6 +592,7 @@ class XMLChannelMTChannel(BaseTranslator):
         :return:
         """
         original_sensor_type = sensor.type
+        original_sensor_description = sensor.description
         # set sensor_type to be a string if it is None
         if original_sensor_type is None:
             sensor_type = ""  # make a string
@@ -600,16 +601,28 @@ class XMLChannelMTChannel(BaseTranslator):
         else:
             sensor_type = copy.deepcopy(original_sensor_type)
 
+        if original_sensor_description is None:
+            sensor_description = ""  # make a string
+        else:
+            sensor_description = copy.deepcopy(original_sensor_type)
+
+
         if sensor_type.lower() in self.understood_sensor_types:
             return sensor_type
         else:
             self.logger.warning(f" sensor {sensor} type {sensor.type} not in {self.understood_sensor_types}")
 
         #  Try handling Bartington FGM at Earthscope ... this is a place holder for handling non-standard cases
-        if sensor.description == "Bartington 3-Axis Fluxgate Sensor":
-            sensor_type = "magnetometer"
-        elif sensor_type.lower() == "bartington":
+        if sensor_type.lower() == "bartington":
             sensor_type = "magnetometer"
+        if not sensor_type:
+            if sensor_description == "Bartington 3-Axis Fluxgate Sensor":
+                sensor_type = "magnetometer"
+            if sensor_description:
+                if ("bf-4" in sensor_description.lower()) & ("schlumberger" in sensor_description.lower()):  # BSL-NCEDC
+                    sensor_type = "magnetometer"
+                elif ("electric" in sensor_description.lower()) & ("dipole" in sensor_description.lower()):  # BSL-NCEDC
+                    sensor_type = "dipole"
 
 
         # reset sensor_type to None it it was not handled

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/transfer_functions/core.py

@@ -274,7 +274,7 @@ class TF:
                 )
                 self.logger.error(msg)
                 raise TypeError(msg)
-        return run_metadata.copy()
+        return run_metadata
 
     def _validate_station_metadata(self, station_metadata):
         """
@@ -298,7 +298,7 @@ class TF:
                 )
                 self.logger.error(msg)
                 raise TypeError(msg)
-        return station_metadata.copy()
+        return station_metadata
 
     def _validate_survey_metadata(self, survey_metadata):
         """
@@ -328,7 +328,7 @@ class TF:
                 )
                 self.logger.error(msg)
                 raise TypeError(msg)
-        return survey_metadata.copy()
+        return survey_metadata
 
     ### Properties ------------------------------------------------------------
     @property
@@ -375,7 +375,9 @@ class TF:
         """
 
         if station_metadata is not None:
-            station_metadata = self._validate_station_metadata(station_metadata)
+            station_metadata = self._validate_station_metadata(
+                station_metadata
+            )
 
             runs = ListDict()
             if self.run_metadata.id not in ["0", 0, None]:
@@ -1475,9 +1477,8 @@ class TF:
         """
         self.station_metadata.id = validate_name(station_name)
         if self.station_metadata.runs[0].id is None:
-            r = self.station_metadata.runs[0].copy()
+            r = self.station_metadata.runs.pop(None)
             r.id = f"{self.station_metadata.id}a"
-            self.station_metadata.runs.remove(None)
             self.station_metadata.runs.append(r)
 
     @property
@@ -1872,9 +1873,13 @@ class TF:
             edi_obj.t = self.tipper.data
             edi_obj.t_err = self.tipper_error.data
         edi_obj.frequency = 1.0 / self.period
-        edi_obj.rotation_angle = np.repeat(
-            self._rotation_angle, self.period.size
-        )
+
+        if isinstance(self._rotation_angle, (int, float)):
+            edi_obj.rotation_angle = np.repeat(
+                self._rotation_angle, self.period.size
+            )
+        else:
+            edi_obj.rotation_angle = self._rotation_angle
 
         # fill from survey metadata
         edi_obj.survey_metadata = self.survey_metadata
@@ -1939,6 +1944,7 @@ class TF:
                     "transfer_function_error": "tf_err",
                     "survey_metadata": "survey_metadata",
                     "station_metadata": "station_metadata",
+                    "_rotation_angle": "rotation_angle",
                 }
             )
         else:
@@ -1951,6 +1957,7 @@ class TF:
                     "tipper_error": "t_err",
                     "survey_metadata": "survey_metadata",
                     "station_metadata": "station_metadata",
+                    "_rotation_angle": "rotation_angle",
                 }
             )
         for tf_key, edi_key in k_dict.items():
@@ -2164,9 +2171,9 @@ class TF:
         """
         zmm_kwargs = {}
         zmm_kwargs["channel_nomenclature"] = self.channel_nomenclature
-        zmm_kwargs[
-            "inverse_channel_nomenclature"
-        ] = self.inverse_channel_nomenclature
+        zmm_kwargs["inverse_channel_nomenclature"] = (
+            self.inverse_channel_nomenclature
+        )
         if hasattr(self, "decimation_dict"):
             zmm_kwargs["decimation_dict"] = self.decimation_dict
         zmm_obj = ZMM(**zmm_kwargs)

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/transfer_functions/io/edi/edi.py

@@ -252,6 +252,22 @@ class EDI(object):
             return 1.0 / self.frequency
         return None
 
+    def _assert_descending_frequency(self):
+        """
+        Assert that the transfer function is ordered from high frequency to low
+        frequency.
+
+        """
+        if self.frequency[0] < self.frequency[1]:
+            self.logger.debug(
+                "Ordered arrays to be arranged from high to low frequency"
+            )
+            self.frequency = self.frequency[::-1]
+            self.z = self.z[::-1]
+            self.z_err = self.z_err[::-1]
+            self.t = self.t[::-1]
+            self.t_err = self.t_err[::-1]
+
     def read(self, fn=None, get_elevation=False):
         """
         Read in an edi file and fill attributes of each section's classes.
@@ -456,13 +472,8 @@ class EDI(object):
             except KeyError as error:
                 self.logger.debug(error)
         # check for order of frequency, we want high togit  low
-        if self.frequency[0] < self.frequency[1]:
-            self.logger.debug(
-                "Ordered arrays to be arranged from high to low frequency"
-            )
-            self.frequency = self.frequency[::-1]
-            self.z = self.z[::-1]
-            self.z_err = self.z_err[::-1]
+        self._assert_descending_frequency()
+
         try:
             self.rotation_angle = np.array(data_dict["zrot"])
         except KeyError:

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/transfer_functions/processing/aurora/decimation_level.py

@@ -31,7 +31,7 @@ attr_dict.add_dict(get_schema("estimator", SCHEMA_FN_PATHS), "estimator")
 # =============================================================================
 
 
-def df_from_bands(band_list):
+def df_from_bands(band_list: list) -> pd.DataFrame:
     """
     Utility function that transforms a list of bands into a dataframe
 
@@ -70,13 +70,13 @@ def df_from_bands(band_list):
     out_df.reset_index(inplace=True, drop=True)
     return out_df
 
-def get_fft_harmonics(samples_per_window, sample_rate):
+def get_fft_harmonics(samples_per_window: int, sample_rate: float) -> np.ndarray:
     """
     Works for odd and even number of points.
 
-    Could be midified with kwargs to support one_sided, two_sided, ignore_dc
-    ignore_nyquist, and etc.  Could actally take FrequencyBands as an argument
-    if we wanted as well.
+    Development notes:
+    Could be modified with kwargs to support one_sided, two_sided, ignore_dc
+    ignore_nyquist, and etc.  Consider taking FrequencyBands as an argument.
 
     Parameters
     ----------

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/transfer_functions/processing/fourier_coefficients/decimation.py

@@ -319,6 +319,7 @@ class Decimation(Base):
             required_channels = decimation_level.reference_channels
         else:
             required_channels = decimation_level.local_channels
+
         try:
             assert set(required_channels).issubset(self.channels_estimated)
         except AssertionError:
@@ -326,7 +327,7 @@ class Decimation(Base):
                 f"required_channels for processing {required_channels} not available"
                 f"-- fc channels estimated are {self.channels_estimated}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # anti_alias_filter
@@ -356,7 +357,7 @@ class Decimation(Base):
                 f"Sample rates do not agree: fc {self.sample_rate_decimation} differs from "
                 f"processing config {decimation_level.decimation.sample_rate}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # method (fft, wavelet, etc.)
@@ -367,7 +368,7 @@ class Decimation(Base):
                 "Transform methods do not agree "
                 f"{self.method} != {decimation_level.method}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # prewhitening_type
@@ -378,7 +379,7 @@ class Decimation(Base):
                 "prewhitening_type does not agree "
                 f"{self.prewhitening_type} != {decimation_level.prewhitening_type}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # recoloring
@@ -389,7 +390,7 @@ class Decimation(Base):
                 "recoloring does not agree "
                 f"{self.recoloring} != {decimation_level.recoloring}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # pre_fft_detrend_type
@@ -403,7 +404,7 @@ class Decimation(Base):
                 "pre_fft_detrend_type does not agree "
                 f"{self.pre_fft_detrend_type} != {decimation_level.pre_fft_detrend_type}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # min_num_stft_windows
@@ -417,7 +418,7 @@ class Decimation(Base):
                 "min_num_stft_windows do not agree "
                 f"{self.min_num_stft_windows} != {decimation_level.min_num_stft_windows}"
             )
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         # window
@@ -427,7 +428,7 @@ class Decimation(Base):
             msg = "window does not agree: "
             msg = f"{msg} FC Group: {self.window} "
             msg = f"{msg} Processing Config  {decimation_level.window}"
-            self.logger.warning(msg)
+            self.logger.info(msg)
             return False
 
         if -1 in self.harmonic_indices:
@@ -444,7 +445,7 @@ class Decimation(Base):
                     f"Processing FC indices {processing_set} is not contained "
                     f"in FC indices {fcdec_group_set}"
                 )
-                self.logger.warning(msg)
+                self.logger.info(msg)
                 return False
 
         # No checks were failed the FCDecimation supports the processing config

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/transfer_functions/tf/standards/transfer_function.json

@@ -23,7 +23,7 @@
         ],
         "alias": [],
         "example": "+",
-		"default": null
+		"default": "+"
     },
     "units": {
         "type": "string",

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata/utils/list_dict.py

@@ -44,18 +44,14 @@ class ListDict:
 
     def _get_key_from_index(self, index):
         try:
-            return next(
-                key for ii, key in enumerate(self._home) if ii == index
-            )
+            return next(key for ii, key in enumerate(self._home) if ii == index)
 
         except StopIteration:
             raise KeyError(f"Could not find {index}")
 
     def _get_index_from_key(self, key):
         try:
-            return next(
-                index for index, k in enumerate(self._home) if k == key
-            )
+            return next(index for index, k in enumerate(self._home) if k == key)
 
         except StopIteration:
             raise KeyError(f"Could not find {key}")
@@ -75,9 +71,7 @@ class ListDict:
         elif hasattr(obj, "component"):
             return obj.component
         else:
-            raise TypeError(
-                "could not identify an appropriate key from object"
-            )
+            raise TypeError("could not identify an appropriate key from object")
 
     def __deepcopy__(self, memodict={}):
         """
@@ -230,9 +224,7 @@ class ListDict:
                 raise (KeyError("Could not find None in keys."))
 
         else:
-            raise TypeError(
-                "could not identify an appropriate key from object"
-            )
+            raise TypeError("could not identify an appropriate key from object")
 
     def extend(self, other, skip_keys=[]):
         """
@@ -282,3 +274,18 @@ class ListDict:
             )
 
         self._home.update(other)
+
+    def pop(self, key):
+        """
+        pop item off of dictionary.  The key must be verbatim
+
+        :param key: key of item to be popped off of dictionary
+        :type key: string
+        :return: item popped
+
+        """
+
+        if key in self.keys():
+            return dict([self._home.popitem(key)])
+        else:
+            raise KeyError(f"{key} is not in ListDict keys.")

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/mt_metadata.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: mt-metadata
-Version: 0.3.7
+Version: 0.3.9
 Summary: Metadata for magnetotelluric data
 Home-page: https://github.com/kujaku11/mt_metadata
 Author: Jared Peacock
@@ -22,7 +22,7 @@ Description-Content-Type: text/markdown
 License-File: LICENSE
 License-File: AUTHORS.rst
 
-# mt_metadata version 0.3.7
+# mt_metadata version 0.3.9
  Standard MT metadata
 
 [![PyPi version](https://img.shields.io/pypi/v/mt_metadata.svg)](https://pypi.python.org/pypi/mt-metadata)
@@ -52,7 +52,7 @@ MT Metadata is a project led by [IRIS-PASSCAL MT Software working group](https:/
 
 Most people will be using the transfer functions, but a lot of that metadata comes from the time series metadata.  This module supports both and has tried to make them more or less seamless to reduce complication.
 
-* **Version**: 0.3.7
+* **Version**: 0.3.9
 * **Free software**: MIT license
 * **Documentation**: https://mt-metadata.readthedocs.io.
 * **Examples**: Click the `Binder` badge above and Jupyter Notebook examples are in **mt_metadata/examples/notebooks** and **docs/source/notebooks**
@@ -420,3 +420,11 @@ History
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/221
 * Patches by @kkappler in https://github.com/kujaku11/mt_metadata/pull/223
 * Bump version: 0.3.6 → 0.3.7 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/225 
+
+0.3.8 (2024-09-30)
+----------------------
+
+* Add pop to ListDict by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/226
+* Fix EDI Tipper flip by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/228
+* Patches by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/227
+* Bump version: 0.3.7 → 0.3.8 by @kujaku11 in https://github.com/kujaku11/mt_metadata/pull/229 

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/setup.py

@@ -56,7 +56,7 @@ setup(
     test_suite="tests",
     tests_require=test_requirements,
     url="https://github.com/kujaku11/mt_metadata",
-    version="0.3.7",
+    version="0.3.9",
     zip_safe=False,
     package_data={
         "": [

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/tests/test_list_dict.py

@@ -60,6 +60,17 @@ class TestListDict(unittest.TestCase):
         lc = self.ld.copy()
         self.assertEqual(self.ld, lc)
 
+    def test_pop(self):
+        self.ld["b"] = 1
+        b = self.ld.pop("b")
+        with self.subTest("value of b"):
+            self.assertEqual(b["b"], 1)
+        with self.subTest("b not in keys"):
+            self.assertNotIn("b", self.ld.keys())
+
+    def test_pop_fail(self):
+        self.assertRaises(KeyError, self.ld.pop, "h")
+
 
 class TestListDictSetIndex(unittest.TestCase):
     @classmethod

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/tests/tf/io/edi/test_cgg_edi.py

@@ -393,6 +393,7 @@ class TestCGGTF(unittest.TestCase):
             "transfer_function.processing_parameters.processing_parameters = [NDec = 1, NFFT = 128, Ntype = 1, RRType = None, RemoveLargeLines = true, RotMaxE = false]",
             "transfer_function.remote_references = []",
             "transfer_function.runs_processed = ['TEST01a']",
+            "transfer_function.sign_convention = +",
             "transfer_function.software.name = L13ss",
         ]
 
@@ -564,6 +565,15 @@ class TestCGGTF(unittest.TestCase):
         with self.subTest("shape"):
             self.assertTupleEqual(self.edi_obj.rotation_angle.shape, (73,))
 
+    def test_set_rotation_angle_to_tf(self):
+        a = self.tf_obj.to_edi()
+        a.rotation_angle[:] = 13
+
+        tf = TF()
+        tf.from_edi(a)
+
+        self.assertTrue((tf._rotation_angle == a.rotation_angle).all())
+
 
 # =============================================================================
 # run

{mt_metadata-0.3.7 → mt_metadata-0.3.9}/tests/tf/io/edi/test_edi.py

@@ -9,13 +9,15 @@ Created on Fri Dec  3 11:42:55 2021
 # =============================================================================
 import unittest
 
-from collections import OrderedDict
+import numpy as np
+
 from mt_metadata.transfer_functions.io.edi.metadata import (
     Header,
     EMeasurement,
     HMeasurement,
     DefineMeasurement,
 )
+from mt_metadata.transfer_functions.io.edi import EDI
 
 
 # =============================================================================
@@ -235,6 +237,34 @@ class TestDefineMeasurement(unittest.TestCase):
         self.assertListEqual(self.meas_list, self.dm.measurement_list)
 
 
+class TestAssertDescendingFrequency(unittest.TestCase):
+    @classmethod
+    def setUpClass(self):
+        self.edi = EDI()
+        self.nf = 7
+        self.edi.frequency = np.logspace(-3, 3, self.nf)
+        self.z = np.arange(self.nf * 4).reshape((self.nf, 2, 2))
+        self.t = np.arange(self.nf * 2).reshape((self.nf, 1, 2))
+        self.edi.z = self.z.copy()
+        self.edi.z_err = self.z.copy()
+        self.edi.t = self.t.copy()
+        self.edi.t_err = self.t.copy()
+
+        self.edi._assert_descending_frequency()
+
+    def test_z(self):
+        self.assertTrue(np.allclose(self.z[::-1], self.edi.z))
+
+    def test_z_err(self):
+        self.assertTrue(np.allclose(self.z[::-1], self.edi.z_err))
+
+    def test_t(self):
+        self.assertTrue(np.allclose(self.t[::-1], self.edi.t))
+
+    def test_t_err(self):
+        self.assertTrue(np.allclose(self.t[::-1], self.edi.t_err))
+
+
 # =============================================================================
 # run
 # =============================================================================