mt-io 0.0.1__tar.gz

mt_io-0.0.1/.gitattributes

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+# Auto detect text files and perform LF normalization
+* text=auto

mt_io-0.0.1/.github/workflows/bump-version.yml

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+name: Bump Version on Release Label
+
+on:
+  pull_request:
+    types: [labeled]
+    branches:
+      - master
+
+permissions:
+  contents: write
+  pull-requests: write
+
+jobs:
+  bump-version:
+    # Run only when a release label is added to an open PR
+    if: |
+      github.event.pull_request.state == 'open' && (
+        github.event.label.name == 'release:major' ||
+        github.event.label.name == 'release:minor' ||
+        github.event.label.name == 'release:patch'
+      )
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Check out PR branch
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.head_ref }}
+          fetch-depth: 0
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+
+      - name: Install tools
+        run: |
+          pip install bump-my-version pandoc
+          sudo apt-get update
+          sudo apt-get install -y pandoc
+          cargo install git-cliff
+
+      - name: Set up Git user
+        run: |
+          git config --local user.email "github-actions[bot]@users.noreply.github.com"
+          git config --local user.name "github-actions[bot]"
+
+      - name: Determine version bump type
+        id: bump
+        run: |
+          if [[ "${{ github.event.label.name }}" == "release:major" ]]; then
+            echo "type=major" >> $GITHUB_OUTPUT
+          elif [[ "${{ github.event.label.name }}" == "release:minor" ]]; then
+            echo "type=minor" >> $GITHUB_OUTPUT
+          else
+            echo "type=patch" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Bump version
+        run: bump-my-version bump ${{ steps.bump.outputs.type }}
+        env:
+          BMV_ALLOW_DIRTY: "true"
+
+      - name: Extract version
+        id: version
+        run: |
+          VERSION=$(bump-my-version show current)
+          echo "Extracted version: $VERSION"
+          echo "version=$VERSION" >> $GITHUB_OUTPUT
+
+      - name: Generate changelog
+        run: |
+          git cliff --unreleased --tag v${{ steps.version.outputs.version }} -o CHANGELOG.md
+          echo "Generated changelog for version ${{ steps.version.outputs.version }}"
+
+      - name: Update HISTORY.rst
+        run: |
+          # Convert CHANGELOG.md to rst and prepend to HISTORY.rst
+          if [ -f CHANGELOG.md ]; then
+            pandoc CHANGELOG.md -f markdown -t rst -o CHANGELOG.rst
+            # Prepend new changelog to HISTORY.rst
+            if [ -f HISTORY.rst ]; then
+              cat CHANGELOG.rst HISTORY.rst > HISTORY_temp.rst
+              mv HISTORY_temp.rst HISTORY.rst
+              echo "Updated HISTORY.rst with version ${{ steps.version.outputs.version }}"
+            else
+              mv CHANGELOG.rst HISTORY.rst
+              echo "Created HISTORY.rst"
+            fi
+          fi
+
+      - name: Commit and push changes to PR branch
+        run: |
+          git add .
+          git commit -m "chore: bump version to ${{ steps.version.outputs.version }} and update changelog [skip ci]" || echo "No changes to commit"
+          git push origin HEAD:${{ github.head_ref }}
+
+      - name: Add comment to PR
+        uses: actions/github-script@v7
+        with:
+          script: |
+            github.rest.issues.createComment({
+              issue_number: context.issue.number,
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              body: '🚀 Version bumped to **v${{ steps.version.outputs.version }}** and changelog updated. Ready to merge!'
+            })

mt_io-0.0.1/.github/workflows/format.yaml

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+name: Format Python code
+
+on:
+  pull_request:
+    branches: [ main ]
+    paths:
+      - '**.py'
+
+jobs:
+  format:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+      with: 
+        ref: ${{ github.head_ref }}
+        fetch-depth: 0
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with: 
+        python-version: '3.11'
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install black isort autoflake
+
+    - name: Format with autoflake, isort, and black
+      run: |
+        # Create list of Python files excluding __init__.py files
+        PYTHON_FILES=$(find . -name "*.py" -type f -not -path "*/\.*" -not -name "__init__.py")
+        
+        # Apply formatting to those files only
+        echo "$PYTHON_FILES" | xargs autoflake --remove-all-unused-imports --expand-star-imports --ignore-init-module-imports --in-place
+        echo "$PYTHON_FILES" | xargs isort --profile black --skip __init__.py --force-alphabetical-sort-within-sections --order-by-type --lines-after-imports=2
+        echo "$PYTHON_FILES" | xargs black
+
+    - name:  Commit changes
+      uses: stefanzweifel/git-auto-commit-action@v4
+      with:
+        commit_message:  "Auto-format code with black and isort"
+        file_pattern: "*.py"

mt_io-0.0.1/.github/workflows/publish.yml

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+name: Publish to PyPI
+
+on:
+  pull_request:
+    types: [closed]
+    branches:
+      - master
+
+permissions:
+  contents: write
+  id-token: write
+
+jobs:
+  publish:
+    # Run only after PR is merged with release labels
+    if: |
+      github.event.pull_request.merged == true && (
+        contains(github.event.pull_request.labels.*.name, 'release:major') ||
+        contains(github.event.pull_request.labels.*.name, 'release:minor') ||
+        contains(github.event.pull_request.labels.*.name, 'release:patch')
+      )
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+
+      - name: Install tools
+        run: pip install bump-my-version build
+
+      - name: Extract version
+        id: version
+        run: |
+          VERSION=$(bump-my-version show current_version)
+          echo "version=$VERSION" >> $GITHUB_OUTPUT
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
+        with:
+          tag_name: v${{ steps.version.outputs.version }}
+          name: v${{ steps.version.outputs.version }}
+          body_path: CHANGELOG.md
+          generate_release_notes: false
+
+      - name: Build package
+        run: python -m build
+
+      - name: Publish to TestPyPI
+        id: test-pypi
+        uses: pypa/gh-action-pypi-publish@v1.13.0
+        with:
+          repository-url: https://test.pypi.org/legacy/
+          skip-existing: true
+          attestations: false
+          
+      - name: Publish to PyPI
+        if: steps.test-pypi.outcome == 'success'
+        uses: pypa/gh-action-pypi-publish@v1.13.0
+        with:
+          skip-existing: true

mt_io-0.0.1/.github/workflows/tests.yml

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+name: Testing
+
+on:
+  push:
+    branches:
+      - '*'
+  pull_request:
+    branches:
+      - '*'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+  
+jobs:
+  setup-build:
+    name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest"]
+        python-version: ["3.11", "3.12", "3.13", "3.14"]
+    defaults:
+      run:
+        shell: bash -el {0}
+
+    steps:
+    - uses: actions/checkout@v4
+    - uses: conda-incubator/setup-miniconda@v3
+      with:
+        auto-update-conda: true
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install Env
+      run: |
+        python --version
+        python -m pip install --upgrade pip
+        python -m pip install uv
+        uv pip install --system \
+          pytest \
+          pytest-cov \
+          pytest-subtests \
+          "pytest-xdist[psutil]" \
+          pytest-benchmark \
+          setuptools \
+          "mt_metadata[obspy]" \
+          "git+https://github.com/kujaku11/mth5_test_data.git"
+    - name: Install Our Package
+      run: |
+        pip install -e .
+        conda list
+
+    - name: Run Tests
+      run: pytest -vv --cov=./ --cov-report=xml --cov=mth5 -n auto tests -k "not slow"
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v3
+      with:
+        flags: tests
+        fail_ci_if_error: false
+        verbose: true

mt_io-0.0.1/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Cursor  
+#  Cursor is an AI-powered code editor.`.cursorignore` specifies files/directories to 
+#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
+#  refer to https://docs.cursor.com/context/ignore-files
+.cursorignore
+.cursorindexingignore

mt_io-0.0.1/.vscode/settings.json

@@ -0,0 +1,9 @@
+{
+    "python-envs.pythonProjects": [
+        {
+            "path": ".",
+            "envManager": "ms-python.python:conda",
+            "packageManager": "ms-python.python:conda"
+        }
+    ]
+}

mt_io-0.0.1/LICENSE

@@ -0,0 +1,121 @@
+Creative Commons Legal Code
+
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+
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+    INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WARRANTIES
+    REGARDING THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS
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+    THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS PROVIDED
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+
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