msw-tasks-core 0.2.0__tar.gz

msw_tasks_core-0.2.0/.gitignore

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+__pycache__/
+*.py[cod]
+*.egg-info/
+dist/
+build/
+.eggs/
+.venv/
+*.so
+src/murineshiftwork/_version.py

msw_tasks_core-0.2.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: msw-tasks-core
+Version: 0.2.0
+Summary: Murine Shift Work core tasks: liquid/sound calibration and hardware test protocols.
+Author-email: "Lars B. Rollik" <lars@rollik.me>
+License-File: LICENSE
+Requires-Python: >=3.12
+Requires-Dist: msw-core>=0.1.0
+Requires-Dist: numpy
+Requires-Dist: one-axis-stage
+Requires-Dist: pybpod-api
+Requires-Dist: pyyaml
+Requires-Dist: tqdm
+Provides-Extra: dev
+Requires-Dist: commitizen; extra == 'dev'
+Requires-Dist: mypy; extra == 'dev'
+Requires-Dist: pre-commit; extra == 'dev'
+Requires-Dist: pytest; extra == 'dev'
+Requires-Dist: pytest-cov; extra == 'dev'
+Requires-Dist: ruff; extra == 'dev'
+Provides-Extra: docs
+Requires-Dist: mkdocs-material; extra == 'docs'
+Requires-Dist: mkdocstrings[python]; extra == 'docs'
+Description-Content-Type: text/markdown
+
+# msw-tasks-core
+
+Core task set for [Murine Shift Work](https://github.com/MurineShiftWork/murineshiftwork):
+liquid and sound calibration protocols, plus minimal hardware test tasks.
+
+Installs as a namespace contributor to `murineshiftwork.tasks.*`.
+Tasks are discoverable by the `msw` CLI via both namespace path scan and `msw.tasks` entry points.
+
+## Installation
+
+```bash
+pip install msw-tasks-core
+```
+
+Requires `murineshiftwork` to be installed.
+
+## Tasks included
+
+**Calibration**
+- `_calibration_liquid_dynamic` - dynamic liquid volume calibration
+- `_calibration_liquid_static` - static liquid volume calibration
+- `_calibration_sound_latency` - sound output latency measurement
+
+**Hardware tests**
+- `_test_bpod_connect` - verify Bpod serial connection
+- `_test_flush_valves` - flush all Bpod valve ports
+- `_test_minimal_task` - minimal state-machine smoke test
+- `_test_pulsepal_connect` - verify PulsePal connection
+- `_test_stage_move` - exercise one-axis stage movement
+- `_test_ttl_barcodes` - TTL barcode encoding/decoding test
+- `_test_ttl_outputs` - BNC TTL output test
+- `_test_barcode_iti` - barcode-in-ITI timing test
+- `_test_video` - video acquisition smoke test
+
+## Development
+
+```bash
+# from workspace root
+uv sync
+```

msw_tasks_core-0.2.0/README.md

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+# msw-tasks-core
+
+Core task set for [Murine Shift Work](https://github.com/MurineShiftWork/murineshiftwork):
+liquid and sound calibration protocols, plus minimal hardware test tasks.
+
+Installs as a namespace contributor to `murineshiftwork.tasks.*`.
+Tasks are discoverable by the `msw` CLI via both namespace path scan and `msw.tasks` entry points.
+
+## Installation
+
+```bash
+pip install msw-tasks-core
+```
+
+Requires `murineshiftwork` to be installed.
+
+## Tasks included
+
+**Calibration**
+- `_calibration_liquid_dynamic` - dynamic liquid volume calibration
+- `_calibration_liquid_static` - static liquid volume calibration
+- `_calibration_sound_latency` - sound output latency measurement
+
+**Hardware tests**
+- `_test_bpod_connect` - verify Bpod serial connection
+- `_test_flush_valves` - flush all Bpod valve ports
+- `_test_minimal_task` - minimal state-machine smoke test
+- `_test_pulsepal_connect` - verify PulsePal connection
+- `_test_stage_move` - exercise one-axis stage movement
+- `_test_ttl_barcodes` - TTL barcode encoding/decoding test
+- `_test_ttl_outputs` - BNC TTL output test
+- `_test_barcode_iti` - barcode-in-ITI timing test
+- `_test_video` - video acquisition smoke test
+
+## Development
+
+```bash
+# from workspace root
+uv sync
+```

msw_tasks_core-0.2.0/VERSION

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+0.2.0

msw_tasks_core-0.2.0/pyproject.toml

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+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
+name = "msw-tasks-core"
+dynamic = ["version"]
+description = "Murine Shift Work core tasks: liquid/sound calibration and hardware test protocols."
+readme = { file = "README.md", content-type = "text/markdown" }
+license = { file = "LICENSE" }
+authors = [
+    { name = "Lars B. Rollik", email = "lars@rollik.me" },
+]
+requires-python = ">=3.12"
+dependencies = [
+    "msw-core>=0.1.0",
+    "pybpod-api",
+    "numpy",
+    "tqdm",
+    "one-axis-stage",
+    "pyyaml",
+]
+
+[project.optional-dependencies]
+dev = [
+    "commitizen",
+    "pytest",
+    "pytest-cov",
+    "pre-commit",
+    "ruff",
+    "mypy",
+]
+docs = [
+    "mkdocs-material",
+    "mkdocstrings[python]",
+]
+
+# ---------------------------------------------------------------------------
+# Task entry-point registration
+# Bundled tasks are also discoverable via murineshiftwork.tasks namespace scan.
+# ---------------------------------------------------------------------------
+
+[project.entry-points."msw.tasks"]
+_calibration_liquid_dynamic = "murineshiftwork.tasks._calibration_liquid_dynamic.task"
+_calibration_liquid_static = "murineshiftwork.tasks._calibration_liquid_static.task"
+_calibration_sound_latency = "murineshiftwork.tasks._calibration_sound_latency.task"
+_test_bpod_connect = "murineshiftwork.tasks._test_bpod_connect.task"
+_test_flush_valves = "murineshiftwork.tasks._test_flush_valves.task"
+_test_minimal_task = "murineshiftwork.tasks._test_minimal_task.task"
+_test_pulsepal_connect = "murineshiftwork.tasks._test_pulsepal_connect.task"
+_test_stage_move = "murineshiftwork.tasks._test_stage_move.task"
+_test_ttl_barcodes = "murineshiftwork.tasks._test_ttl_barcodes.task"
+_test_ttl_outputs = "murineshiftwork.tasks._test_ttl_outputs.task"
+_test_barcode_iti = "murineshiftwork.tasks._test_barcode_iti.task"
+_test_video = "murineshiftwork.tasks._test_video.task"
+
+# ---------------------------------------------------------------------------
+# Build
+# ---------------------------------------------------------------------------
+
+[tool.hatch.version]
+source = "vcs"
+fallback-version = "0.1.0"
+
+[tool.hatch.build.hooks.vcs]
+version-file = "src/murineshiftwork/_version.py"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/murineshiftwork"]
+artifacts = [
+    "src/murineshiftwork/**/*.yaml",
+]
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/src/murineshiftwork",
+    "/tests",
+    "/README.md",
+    "/LICENSE",
+    "/pyproject.toml",
+    "/VERSION",
+]
+
+# ---------------------------------------------------------------------------
+# Pytest
+# ---------------------------------------------------------------------------
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+addopts = "--cov=src/murineshiftwork --durations=0"
+
+# ---------------------------------------------------------------------------
+# Ruff
+# ---------------------------------------------------------------------------
+
+[tool.ruff]
+line-length = 88
+indent-width = 4
+src = ["src"]
+
+[tool.ruff.lint]
+select = ["E", "W", "F", "I", "UP", "YTT", "SIM", "PTH"]
+ignore = ["E501"]
+fixable = ["ALL"]
+
+[tool.ruff.format]
+quote-style = "double"
+indent-style = "space"
+line-ending = "auto"
+
+# ---------------------------------------------------------------------------
+# Mypy
+# ---------------------------------------------------------------------------
+
+[tool.mypy]
+python_version = "3.12"
+ignore_missing_imports = true
+
+# ---------------------------------------------------------------------------
+# Commitizen
+# ---------------------------------------------------------------------------
+
+[tool.commitizen]
+name = "cz_conventional_commits"
+version_provider = "commitizen"
+version = "0.2.0"
+tag_format = "v$version"
+update_changelog_on_bump = false
+version_files = ["VERSION"]

msw_tasks_core-0.2.0/src/murineshiftwork/_version.py

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+# file generated by vcs-versioning
+# don't change, don't track in version control
+from __future__ import annotations
+
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
+
+version: str
+__version__: str
+__version_tuple__: tuple[int | str, ...]
+version_tuple: tuple[int | str, ...]
+commit_id: str | None
+__commit_id__: str | None
+
+__version__ = version = '0.2.0'
+__version_tuple__ = version_tuple = (0, 2, 0)
+
+__commit_id__ = commit_id = None