msasim 24.7.0__tar.gz → 24.8.0__tar.gz
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- {msasim-24.7.0 → msasim-24.8.0}/PKG-INFO +1 -1
- {msasim-24.7.0 → msasim-24.8.0}/msasim/sailfish.py +1 -9
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/PKG-INFO +1 -1
- {msasim-24.7.0 → msasim-24.8.0}/pyproject.toml +3 -1
- {msasim-24.7.0 → msasim-24.8.0}/setup.py +1 -0
- {msasim-24.7.0 → msasim-24.8.0}/src/main.cpp +1 -0
- {msasim-24.7.0 → msasim-24.8.0}/LICENSE +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/README.md +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim/__init__.py +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/SOURCES.txt +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/dependency_links.txt +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/not-zip-safe +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/requires.txt +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/msasim.egg-info/top_level.txt +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/setup.cfg +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/src/modelFactory.cpp +0 -0
- {msasim-24.7.0 → msasim-24.8.0}/src/rateMatrixSim.cpp +0 -0
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@@ -5,14 +5,6 @@ from typing import List, Optional, Dict
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from re import split
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from enum import Enum
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# print(_Sailfish.Tree)
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# print(_Sailfish.Simulator)
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# print(_Sailfish.SimProtocol)
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# print(_Sailfish.Msa)
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# print(_Sailfish.DiscreteDistribution)
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# print(_Sailfish.modelFactory)
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# print(_Sailfish.alphabetCode)
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# print(_Sailfish.modelCode)
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MODEL_CODES = _Sailfish.modelCode
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@@ -390,7 +382,7 @@ class Msa:
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return self._msa.print_indels()
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def get_msa(self) -> str:
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return self._msa.
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return self._msa.get_msa_string()
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def write_msa(self, file_path) -> None:
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self._msa.write_msa(file_path)
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@@ -21,13 +21,15 @@ before-all = [
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"cp libPhylolib.* ../",
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]
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[tool.cibuildwheel.windows]
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before-all = [
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"cd libs/Phylolib",
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"cmake -DCMAKE_BUILD_TYPE=Release .",
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"cmake --build . --config Release",
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"cmake --build . --config Release --verbose",
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"ls .",
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"cp Release/Phylolib.lib ../",
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"ls ./Release/",
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]
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[tool.cibuildwheel.macos]
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@@ -149,6 +149,7 @@ PYBIND11_MODULE(_Sailfish, m) {
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.def("print_msa", &MSA::printFullMsa)
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.def("print_indels", &MSA::printIndels)
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.def("write_msa", &MSA::writeFullMsa)
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.def("get_msa_string", &MSA::generateMsaString)
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.def("get_msa", &MSA::getMSAVec);
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}
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