mrid-python 0.1.6__tar.gz → 0.1.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. {mrid_python-0.1.6 → mrid_python-0.1.8}/PKG-INFO +1 -1
  2. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/hd_bet.py +2 -2
  3. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/simple_elastix.py +2 -2
  4. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/study.py +1 -1
  5. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/PKG-INFO +1 -1
  6. {mrid_python-0.1.6 → mrid_python-0.1.8}/pyproject.toml +1 -1
  7. {mrid_python-0.1.6 → mrid_python-0.1.8}/README.md +0 -0
  8. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/__init__.py +0 -0
  9. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/atlas/MNI152/__init__.py +0 -0
  10. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/atlas/SRI24/__init__.py +0 -0
  11. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/atlas/__init__.py +0 -0
  12. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/inference/__init__.py +0 -0
  13. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/loading/__init__.py +0 -0
  14. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/loading/convert.py +0 -0
  15. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/CTseg.py +0 -0
  16. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/__init__.py +0 -0
  17. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/bias_field_correction.py +0 -0
  18. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/cropping.py +0 -0
  19. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/haca3.py +0 -0
  20. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/mask.py +0 -0
  21. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/spatial.py +0 -0
  22. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/synthstrip.py +0 -0
  23. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/training/__init__.py +0 -0
  24. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/training/cropping.py +0 -0
  25. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/training/padding.py +0 -0
  26. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/training/slicer.py +0 -0
  27. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/training/transforms.py +0 -0
  28. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/__init__.py +0 -0
  29. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/dcm2niix.py +0 -0
  30. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/dicom_uid_fixer.py +0 -0
  31. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/plotting.py +0 -0
  32. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/python_utils.py +0 -0
  33. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/sitk_utils.py +0 -0
  34. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/stl_utils.py +0 -0
  35. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/utils/torch_utils.py +0 -0
  36. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/SOURCES.txt +0 -0
  37. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/dependency_links.txt +0 -0
  38. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/requires.txt +0 -0
  39. {mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/top_level.txt +0 -0
  40. {mrid_python-0.1.6 → mrid_python-0.1.8}/setup.cfg +0 -0
  41. {mrid_python-0.1.6 → mrid_python-0.1.8}/tests/test_loading.py +0 -0
  42. {mrid_python-0.1.6 → mrid_python-0.1.8}/tests/test_preprocessing.py +0 -0
  43. {mrid_python-0.1.6 → mrid_python-0.1.8}/tests/test_study.py +0 -0
  44. {mrid_python-0.1.6 → mrid_python-0.1.8}/tests/test_utils.py +0 -0
{mrid_python-0.1.6 → mrid_python-0.1.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mrid-python
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- Version: 0.1.6
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+ Version: 0.1.8
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  Summary: Tools for working with 3D medical images and segmentations - registration, brain skull-stripping, etc.
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  Author-email: Ivan Nikishev <nkshv2@gmail.com>
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  Project-URL: Homepage, https://github.com/inikishev/mrid
{mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/hd_bet.py RENAMED
@@ -8,8 +8,8 @@ import SimpleITK as sitk
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  from ..loading.convert import ImageLike, tositk
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  from ..utils.torch_utils import CUDA_IF_AVAILABLE
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+ from .mask import apply_mask, expand_binary_mask
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  from .simple_elastix import register, register_D
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- from .mask import expand_binary_mask, apply_mask
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  # hd_bet -h
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@@ -130,7 +130,7 @@ def predict_brain_mask(
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  else:
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  brain_mask = brain_mask_mni
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- return brain_mask
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+ return sitk.Cast(brain_mask, sitk.sitkUInt8)
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  def skullstrip(
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  input: ImageLike,
{mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/preprocessing/simple_elastix.py RENAMED
@@ -1,11 +1,11 @@
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+ import os
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  from collections.abc import Mapping, Sequence
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  from typing import TYPE_CHECKING, Any
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- import os
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  import numpy as np
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  import SimpleITK as sitk
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- from ..loading.convert import tositk, ImageLike
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+ from ..loading.convert import ImageLike, tositk
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  def _default_pmap():
{mrid_python-0.1.6 → mrid_python-0.1.8}/mrid/study.py RENAMED
@@ -13,8 +13,8 @@ import SimpleITK as sitk
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  from . import preprocessing
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  from .loading.convert import ImageLike, tonumpy, tositk, totensor
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- from .utils.torch_utils import CUDA_IF_AVAILABLE
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  from .utils.sitk_utils import sitk_apply_numpy
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+ from .utils.torch_utils import CUDA_IF_AVAILABLE
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  if TYPE_CHECKING:
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  import torch
{mrid_python-0.1.6 → mrid_python-0.1.8}/mrid_python.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mrid-python
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- Version: 0.1.6
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+ Version: 0.1.8
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  Summary: Tools for working with 3D medical images and segmentations - registration, brain skull-stripping, etc.
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  Author-email: Ivan Nikishev <nkshv2@gmail.com>
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  Project-URL: Homepage, https://github.com/inikishev/mrid
{mrid_python-0.1.6 → mrid_python-0.1.8}/pyproject.toml RENAMED
@@ -13,7 +13,7 @@ build-backend = "setuptools.build_meta"
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  name = "mrid-python"
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  description = "Tools for working with 3D medical images and segmentations - registration, brain skull-stripping, etc."
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- version = "0.1.6"
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+ version = "0.1.8"
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  dependencies = [
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  "numpy",
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  "SimpleITK",
{mrid_python-0.1.6 → mrid_python-0.1.8}/README.md RENAMED
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{mrid_python-0.1.6 → mrid_python-0.1.8}/setup.cfg RENAMED
File without changes