mozarrt 0.1.0__tar.gz

mozarrt-0.1.0/.gitattributes

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+# SCM syntax highlighting & preventing 3-way merges
+pixi.lock merge=binary linguist-language=YAML linguist-generated=true

mozarrt-0.1.0/.github/workflows/publish.yml

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+name: Publish to PyPI
+
+on:
+  push:
+    tags:
+      - 'mozarrt-*'
+    branches:
+      - main
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    name: Build wheel and source distribution
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
+    runs-on: ubuntu-latest
+
+    environment: release
+    permissions:
+      id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v6
+      with:
+        fetch-depth: 0
+
+    - name: Set up Pixi
+      uses: prefix-dev/setup-pixi@v0.9.3
+      with:
+        cache: true
+        environments: >-
+          py312
+          build
+
+    - name: Test
+      run: pixi run --environment py312 test
+
+    - name: Build package
+      run: pixi run --environment build build
+
+    - name: Upload artifacts
+      uses: actions/upload-artifact@v6
+      with:
+        name: python-artifacts
+        path: dist/*
+        if-no-files-found: error
+
+  publish:
+    name: Publish to PyPI
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
+    needs:
+      - build
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: write
+      id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
+
+    steps:
+      - name: Download Python artifacts
+        uses: actions/download-artifact@v7
+        with:
+          name: python-artifacts
+          path: dist
+      - name: Add assets to release
+        uses: softprops/action-gh-release@v2
+        with:
+          files: dist/*
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@v1.13.0

mozarrt-0.1.0/.github/workflows/test.yml

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+name: test
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+concurrency:
+  group: test-${{ github.head_ref }}
+  cancel-in-progress: true
+
+env:
+  PYTHONUNBUFFERED: "1"
+  FORCE_COLOR: "1"
+
+jobs:
+  run:
+    name: ${{ matrix.pixi-environment }} - ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    permissions:
+      contents: read
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        pixi-environment:
+          - py312
+          - py313
+          - py314
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Set up Pixi
+        uses: prefix-dev/setup-pixi@v0.9.3
+        with:
+          cache: true
+          environments: ${{ matrix.pixi-environment }}
+
+      - name: Run tests
+        run: pixi run --environment ${{ matrix.pixi-environment }} cov-xml
+
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          slug: fmi-faim/mozarrt

mozarrt-0.1.0/.gitignore

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+# pixi environments
+.pixi/*
+!.pixi/config.toml
+.DS_Store
+__pycache__
+.vscode
+dist
+.coverage

mozarrt-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: mozarrt
+Version: 0.1.0
+Summary: MoBIE OME-Zarr Tools
+Author-email: Jan Eglinger <jan.eglinger@fmi.ch>
+Requires-Python: >=3.12
+Requires-Dist: cyclopts<5,>=4.5.0
+Requires-Dist: loguru<0.8,>=0.7.3
+Requires-Dist: mobiedantic<0.5,>=0.4.1
+Requires-Dist: natsort<9,>=8.4.0
+Requires-Dist: ngio<0.6,>=0.5.3
+Requires-Dist: pandas<3,>=2.3.3

mozarrt-0.1.0/notebooks/mobie_collection.csv

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+uri,name,type,channel,color,blend,affine,tps,view,exclusive,group,contrast_limits,grid,grid_position,display,format,spot_radius,bounding_box
+/Users/eglijan/data/zenodo/20200812-CardiomyocyteDifferentiation14-Cycle1.zarr/B/03/0,WellName,,,,,,,,,,,,,,,,