mosamatic2 2.0.14__tar.gz → 2.0.15__tar.gz

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  1. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/PKG-INFO +1 -1
  2. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/pyproject.toml +1 -1
  3. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/utils.py +4 -0
  4. mosamatic2-2.0.15/src/mosamatic2/ui/resources/VERSION +1 -0
  5. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/pipelines/boadockerpipelinepanel.py +10 -0
  6. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/pipelines/defaultdockerpipelinepanel.py +13 -0
  7. mosamatic2-2.0.14/src/mosamatic2/ui/resources/VERSION +0 -1
  8. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/README.md +0 -0
  9. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/models.py +0 -0
  10. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/__init__.py +0 -0
  11. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/app.py +0 -0
  12. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/cli.py +0 -0
  13. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/__init__.py +0 -0
  14. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/boadockerpipeline.py +0 -0
  15. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/calculatescores.py +0 -0
  16. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/createdicomsummary.py +0 -0
  17. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/createpngsfromsegmentations.py +0 -0
  18. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/defaultdockerpipeline.py +0 -0
  19. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/defaultpipeline.py +0 -0
  20. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/dicom2nifti.py +0 -0
  21. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/rescaledicomimages.py +0 -0
  22. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/segmentmusclefatl3tensorflow.py +0 -0
  23. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/selectslicefromscans.py +0 -0
  24. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/commands/totalsegmentator.py +0 -0
  25. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/constants.py +0 -0
  26. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/__init__.py +0 -0
  27. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/__init__.py +0 -0
  28. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/dicomimage.py +0 -0
  29. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/dicomimageseries.py +0 -0
  30. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/dixonseries.py +0 -0
  31. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/filedata.py +0 -0
  32. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/multidicomimage.py +0 -0
  33. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/multiniftiimage.py +0 -0
  34. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/multinumpyimage.py +0 -0
  35. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/niftiimage.py +0 -0
  36. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/data/numpyimage.py +0 -0
  37. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/managers/__init__.py +0 -0
  38. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/managers/logmanager.py +0 -0
  39. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/managers/logmanagerlistener.py +0 -0
  40. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/__init__.py +0 -0
  41. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/boadockerpipeline/__init__.py +0 -0
  42. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/boadockerpipeline/boadockerpipeline.py +0 -0
  43. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/defaultdockerpipeline/__init__.py +0 -0
  44. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/defaultdockerpipeline/defaultdockerpipeline.py +0 -0
  45. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/defaultpipeline/__init__.py +0 -0
  46. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/defaultpipeline/defaultpipeline.py +0 -0
  47. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/pipelines/pipeline.py +0 -0
  48. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/singleton.py +0 -0
  49. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/__init__.py +0 -0
  50. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/calculatescorestask/__init__.py +0 -0
  51. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/calculatescorestask/calculatescorestask.py +0 -0
  52. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/createdicomsummarytask/__init__.py +0 -0
  53. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/createdicomsummarytask/createdicomsummarytask.py +0 -0
  54. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/createpngsfromsegmentationstask/__init__.py +0 -0
  55. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/createpngsfromsegmentationstask/createpngsfromsegmentationstask.py +0 -0
  56. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/dicom2niftitask/__init__.py +0 -0
  57. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/dicom2niftitask/dicom2niftitask.py +0 -0
  58. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/rescaledicomimagestask/__init__.py +0 -0
  59. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/rescaledicomimagestask/rescaledicomimagestask.py +0 -0
  60. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/__init__.py +0 -0
  61. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/paramloader.py +0 -0
  62. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/segmentmusclefatl3tensorflowtask.py +0 -0
  63. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/selectslicefromscanstask/__init__.py +0 -0
  64. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/selectslicefromscanstask/selectslicefromscanstask.py +0 -0
  65. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/task.py +0 -0
  66. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/totalsegmentatortask/__init__.py +0 -0
  67. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/core/tasks/totalsegmentatortask/totalsegmentatortask.py +0 -0
  68. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/server.py +0 -0
  69. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/__init__.py +0 -0
  70. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/mainwindow.py +0 -0
  71. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/resources/icons/mosamatic2.icns +0 -0
  72. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/resources/icons/mosamatic2.ico +0 -0
  73. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/resources/icons/spinner.gif +0 -0
  74. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/resources/images/body-composition.jpg +0 -0
  75. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/settings.py +0 -0
  76. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/utils.py +0 -0
  77. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/__init__.py +0 -0
  78. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/dialogs/__init__.py +0 -0
  79. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/dialogs/dialog.py +0 -0
  80. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/dialogs/helpdialog.py +0 -0
  81. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/__init__.py +0 -0
  82. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/defaultpanel.py +0 -0
  83. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/logpanel.py +0 -0
  84. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/mainpanel.py +0 -0
  85. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/pipelines/__init__.py +0 -0
  86. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/pipelines/defaultpipelinepanel.py +0 -0
  87. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/pipelines/pipelinepanel.py +0 -0
  88. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/stackedpanel.py +0 -0
  89. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/__init__.py +0 -0
  90. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/calculatescorestaskpanel.py +0 -0
  91. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/createdicomsummarytaskpanel.py +0 -0
  92. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/createpngsfromsegmentationstaskpanel.py +0 -0
  93. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/dicom2niftitaskpanel.py +0 -0
  94. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/rescaledicomimagestaskpanel.py +0 -0
  95. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/segmentmusclefatl3tensorflowtaskpanel.py +0 -0
  96. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/selectslicefromscanstaskpanel.py +0 -0
  97. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/taskpanel.py +0 -0
  98. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/tasks/totalsegmentatortaskpanel.py +0 -0
  99. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/__init__.py +0 -0
  100. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/slicevisualization/__init__.py +0 -0
  101. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/slicevisualization/custominteractorstyle.py +0 -0
  102. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/slicevisualization/sliceviewer.py +0 -0
  103. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/slicevisualization/slicevisualization.py +0 -0
  104. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/panels/visualizations/visualization.py +0 -0
  105. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/widgets/splashscreen.py +0 -0
  106. {mosamatic2-2.0.14 → mosamatic2-2.0.15}/src/mosamatic2/ui/worker.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: mosamatic2
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- Version: 2.0.14
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+ Version: 2.0.15
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  Summary:
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  Author: Ralph Brecheisen
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  Author-email: r.brecheisen@maastrichtuniversity.nl
@@ -1,6 +1,6 @@
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  [project]
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  name = "mosamatic2"
3
- version = "2.0.14"
3
+ version = "2.0.15"
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  description = ""
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5
  authors = [
6
6
  {name = "Ralph Brecheisen", email = "r.brecheisen@maastrichtuniversity.nl"}
@@ -363,5 +363,9 @@ def is_docker_running():
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  return False
364
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365
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+ def is_path_docker_compatible(path):
367
+ return not ' ' in path
368
+
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+
366
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  def to_unix_path(path):
367
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  return path.replace("\\", "/").replace(" ", "\\ ")
@@ -16,6 +16,7 @@ from PySide6.QtCore import (
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  )
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  from mosamatic2.core.managers.logmanager import LogManager
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+ from mosamatic2.core.utils import is_docker_running, is_path_docker_compatible
19
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  from mosamatic2.ui.widgets.panels.pipelines.pipelinepanel import PipelinePanel
20
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  from mosamatic2.ui.settings import Settings
21
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  from mosamatic2.ui.utils import is_macos
@@ -127,6 +128,15 @@ class BoaDockerPipelinePanel(PipelinePanel):
127
128
  self.settings().set('last_directory', directory)
128
129
 
129
130
  def handle_run_pipeline_button(self):
131
+ if not is_docker_running():
132
+ QMessageBox.information(self, 'Error', 'Docker is not running. Please start Docker Desktop first')
133
+ return
134
+ if not is_path_docker_compatible(self.scans_dir_line_edit().text()):
135
+ QMessageBox.information(self, 'Error', 'Path to scans directory contains spaces and is not Docker compatible')
136
+ return
137
+ if not is_path_docker_compatible(self.output_dir_line_edit().text()):
138
+ QMessageBox.information(self, 'Error', 'Path to output directory contains spaces and is not Docker compatible')
139
+ return
130
140
  errors = self.check_inputs_and_parameters()
131
141
  if len(errors) > 0:
132
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  error_message = 'Following errors were encountered:\n'
@@ -18,6 +18,7 @@ from PySide6.QtCore import (
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18
  )
19
19
 
20
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  from mosamatic2.core.managers.logmanager import LogManager
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+ from mosamatic2.core.utils import is_docker_running, is_path_docker_compatible
21
22
  from mosamatic2.ui.widgets.panels.pipelines.pipelinepanel import PipelinePanel
22
23
  from mosamatic2.ui.settings import Settings
23
24
  from mosamatic2.ui.utils import is_macos
@@ -223,6 +224,18 @@ class DefaultDockerPipelinePanel(PipelinePanel):
223
224
  self.model_type_combobox().setCurrentText('pytorch')
224
225
 
225
226
  def handle_run_pipeline_button(self):
227
+ if not is_docker_running():
228
+ QMessageBox.information(self, 'Error', 'Docker is not running. Please start Docker Desktop first')
229
+ return
230
+ if not is_path_docker_compatible(self.images_dir_line_edit().text()):
231
+ QMessageBox.information(self, 'Error', 'Path to images directory contains spaces and is not Docker compatible')
232
+ return
233
+ if not is_path_docker_compatible(self.model_files_dir_line_edit().text()):
234
+ QMessageBox.information(self, 'Error', 'Path to model files directory contains spaces and is not Docker compatible')
235
+ return
236
+ if not is_path_docker_compatible(self.output_dir_line_edit().text()):
237
+ QMessageBox.information(self, 'Error', 'Path to output directory contains spaces and is not Docker compatible')
238
+ return
226
239
  errors = self.check_inputs_and_parameters()
227
240
  if len(errors) > 0:
228
241
  error_message = 'Following errors were encountered:\n'
@@ -1 +0,0 @@
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- 2.0.14
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