morphio 3.5.0__tar.gz → 3.5.1__tar.gz

{morphio-3.5.0 → morphio-3.5.1}/.github/workflows/check-sdist.yml

@@ -13,12 +13,13 @@ jobs:
     if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4
         with:
           submodules: 'true'
+          persist-credentials: false
 
       - name: Set up Python 3.10
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
           python-version: '3.10'
 

{morphio-3.5.0 → morphio-3.5.1}/.github/workflows/publish-sdist-wheels.yml

@@ -6,7 +6,7 @@ env:
 
   CIBW_BUILD_VERBOSITY: 1
   CIBW_BUILD: 'cp*'
-  CIBW_SKIP: '*-manylinux_i686 *-win32 *musllinux* cp314t-*'
+  CIBW_SKIP: '*-manylinux_i686 *-win32 *musllinux* cp314t-* cp315*'
   CIBW_BEFORE_TEST: pip install -r {project}/tests/requirement_tests.txt
   CIBW_TEST_COMMAND: pytest -s -v {project}/tests
   UNIXY_HDF5_VERSION: 1.14.3
@@ -24,12 +24,13 @@ jobs:
         os: [ubuntu-24.04, ubuntu-24.04-arm, windows-2022, macos-14, macos-15-intel]
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4
         with:
           submodules: 'true'
+          persist-credentials: false
 
       - name: Install Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
           python-version: '3.11'
 
@@ -39,7 +40,7 @@ jobs:
 
       - name: Cache HDF5 On Linux/macOS
         if: runner.os == 'Linux' || runner.os == 'macOS'
-        uses: actions/cache@v4
+        uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4
         id: cache-hdf5-posix
         env:
           cache-name: cache-hdf5-posix
@@ -89,7 +90,7 @@ jobs:
       - name: Cache HDF5 On Windows
         if: runner.os == 'Windows'
         id: cache-hdf5-windows
-        uses: actions/cache@v4
+        uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4
         env:
           cache-name: cache-hdf5-windows
         with:
@@ -140,7 +141,7 @@ jobs:
           python -m cibuildwheel --output-dir dist
 
       - name: Store wheel as artifact
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
         with:
           name: dist-wheels-${{ matrix.os }}
           path: dist/*.whl
@@ -151,12 +152,13 @@ jobs:
 
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4
         with:
           submodules: 'true'
+          persist-credentials: false
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
           python-version: '3.10'
 
@@ -173,7 +175,7 @@ jobs:
           pytest -s -v tests
 
       - name: Store sdist as artifact
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
         with:
           name: dist-sdist
           path: dist/*.tar.gz
@@ -190,7 +192,7 @@ jobs:
 
     steps:
       - name: Download artifacts produced during the build_wheels and build_sdist jobs
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4
         with:
           pattern: dist-*
           path: dist/

{morphio-3.5.0 → morphio-3.5.1}/.github/workflows/run-tests.yml

@@ -24,12 +24,13 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4
         with:
           submodules: 'true'
+          persist-credentials: false
 
       - name: Setup python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
           python-version: '3.10'
 

{morphio-3.5.0 → morphio-3.5.1}/.readthedocs.yaml

@@ -14,11 +14,11 @@ submodules:
 # doesn't find HDF5, if the hdf5 headers are available by the system, then
 # it works
 build:
-  os: "ubuntu-20.04"
+  os: "ubuntu-24.04"
   apt_packages:
     - libhdf5-dev
   tools:
-    python: "3.9"
+    python: "3.12"
 
 sphinx:
   configuration: doc/source/conf.py

{morphio-3.5.0 → morphio-3.5.1}/CHANGELOG.md

@@ -1,3 +1,8 @@
+Unreleased
+==========
+New Features:
+* `n_sections` property for immutable Morphology and Vasculature
+
 v3.4.0
 ======
 Improvements:

{morphio-3.5.0 → morphio-3.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: morphio
-Version: 3.5.0
+Version: 3.5.1
 Summary: A neuron morphology IO library
 Home-page: https://github.com/openbraininstitute/MorphIO
 Author: Blue Brain Project, EPFL
@@ -17,7 +17,8 @@ License-File: LICENSE.txt
 License-File: AUTHORS.txt
 Requires-Dist: numpy>=1.14.1
 Provides-Extra: docs
-Requires-Dist: sphinx-bluebrain-theme; extra == "docs"
+Requires-Dist: sphinx<10,>=8.2; extra == "docs"
+Requires-Dist: obi-sphinx-theme>=2.0.0; extra == "docs"
 Dynamic: author
 Dynamic: classifier
 Dynamic: description

{morphio-3.5.0 → morphio-3.5.1}/binds/python/bind_immutable.cpp

@@ -107,6 +107,10 @@ void bind_morphology(py::module& m) {
             "n_points",
             [](const morphio::Morphology& obj) { return obj.points().size(); },
             "Returns the number of points from all sections (soma points are not included)")
+        .def_property_readonly(
+            "n_sections",
+            [](const morphio::Morphology& obj) { return obj.sectionTypes().size(); },
+            "Returns the number of sections (soma is not included)")
         .def_property_readonly(
             "diameters",
             [](const morphio::Morphology& morpho) {

{morphio-3.5.0 → morphio-3.5.1}/binds/python/bind_vasculature.cpp

@@ -69,6 +69,10 @@ void bind_vasculature(py::module& m) {
             "n_points",
             [](const morphio::vasculature::Vasculature& obj) { return obj.points().size(); },
             "Returns the number of points from all sections")
+        .def_property_readonly(
+            "n_sections",
+            [](const morphio::vasculature::Vasculature& obj) { return obj.sectionTypes().size(); },
+            "Returns the number of sections")
 
         .def_property_readonly(
             "diameters",

{morphio-3.5.0 → morphio-3.5.1}/morphio.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: morphio
-Version: 3.5.0
+Version: 3.5.1
 Summary: A neuron morphology IO library
 Home-page: https://github.com/openbraininstitute/MorphIO
 Author: Blue Brain Project, EPFL
@@ -17,7 +17,8 @@ License-File: LICENSE.txt
 License-File: AUTHORS.txt
 Requires-Dist: numpy>=1.14.1
 Provides-Extra: docs
-Requires-Dist: sphinx-bluebrain-theme; extra == "docs"
+Requires-Dist: sphinx<10,>=8.2; extra == "docs"
+Requires-Dist: obi-sphinx-theme>=2.0.0; extra == "docs"
 Dynamic: author
 Dynamic: classifier
 Dynamic: description

morphio-3.5.1/morphio.egg-info/requires.txt

@@ -0,0 +1,5 @@
+numpy>=1.14.1
+
+[docs]
+sphinx<10,>=8.2
+obi-sphinx-theme>=2.0.0