morphio 2.6.2__tar.gz → 2.7.1__tar.gz

{MorphIO-2.6.2 → MorphIO-2.7.1}/.github/workflows/publish-sdist-wheels.yml

@@ -62,7 +62,10 @@ jobs:
     name: Build sdist
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@master
+      - uses: actions/checkout@v2
+        with:
+          submodules: 'true'
+
       - name: Set up Python 3.6
         uses: actions/setup-python@v2
         with:
@@ -70,6 +73,12 @@ jobs:
       - name: Build a source tarball
         run:
           python setup.py sdist
+      - name: Test tarball
+        run: |
+          sudo apt install -y libhdf5-dev
+          pip install -r tests/requirement_tests.txt
+          pip install dist/*
+          nosetests -s -v -P tests
       - name: Store sdist as artifact
         uses: actions/upload-artifact@v2
         with:

MorphIO-2.7.1/3rdparty/GSL_LITE/CMakeLists.txt

@@ -0,0 +1,86 @@
+# Copyright 2015-2018 by Martin Moene
+#
+# gsl-lite is based on GSL: Guideline Support Library,
+# https://github.com/microsoft/gsl
+#
+# This code is licensed under the MIT License (MIT).
+
+cmake_minimum_required( VERSION 3.0 FATAL_ERROR )
+
+# gsl-lite version, updated by script/update-version.py:
+
+set( gsl_lite_version "0.32.0" )
+
+# At default, disable building and performing of tests and building of examples:
+
+option( GSL_LITE_OPT_BUILD_TESTS    "Build and perform gsl-lite tests" OFF )
+option( GSL_LITE_OPT_BUILD_EXAMPLES "Build gsl-lite examples" OFF )
+
+include( CMakePackageConfigHelpers )
+
+set( package_name "gsl-lite" )
+
+project( ${package_name} VERSION ${gsl_lite_version} LANGUAGES CXX )
+
+set(         include_source_dir "${PROJECT_SOURCE_DIR}/include" )
+set(        include_install_dir "include" )
+set( package_config_install_dir "lib/cmake/${PROJECT_NAME}" )
+set(        package_config_file "${PROJECT_BINARY_DIR}/${PROJECT_NAME}Config.cmake" )
+set(       package_version_file "${PROJECT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake" )
+set(        package_export_name "${PROJECT_NAME}Targets" )
+set(          package_namespace "${PROJECT_NAME}::" )
+
+# Interface library:
+
+add_library(                
+    ${package_name} INTERFACE )
+    
+target_include_directories( 
+    ${package_name} INTERFACE "$<BUILD_INTERFACE:${include_source_dir}>" )
+    
+target_sources(             
+    ${package_name} INTERFACE "$<BUILD_INTERFACE:${PROJECT_SOURCE_DIR}/gsl-lite.natvis>" )
+
+# Package configuration:
+
+configure_package_config_file( 
+   "${PROJECT_SOURCE_DIR}/cmake/PackageConfig.cmake.in"
+    ${package_config_file} INSTALL_DESTINATION ${package_config_install_dir} )
+
+write_basic_package_version_file(
+    ${package_version_file} COMPATIBILITY SameMajorVersion )
+
+# Installation:
+
+install(
+    TARGETS     ${package_name}
+    EXPORT      ${package_export_name}
+    INCLUDES DESTINATION ${include_install_dir} )
+
+install(
+    EXPORT      ${package_export_name}
+    NAMESPACE   ${package_namespace}
+    DESTINATION ${package_config_install_dir} )
+    
+install(
+    DIRECTORY  "${include_source_dir}/"
+    DESTINATION ${include_install_dir} )
+
+install(
+    FILES      "${package_config_file}"
+               "${package_version_file}"
+    DESTINATION ${package_config_install_dir} )
+
+# If requested, build and perform tests, build examples:
+
+enable_testing()
+
+if ( GSL_LITE_OPT_BUILD_TESTS )
+    add_subdirectory( test )
+endif()
+
+if ( GSL_LITE_OPT_BUILD_EXAMPLES )
+    add_subdirectory( example )
+endif()
+
+# end of file

MorphIO-2.7.1/3rdparty/GSL_LITE/cmake/PackageConfig.cmake.in

@@ -0,0 +1,4 @@
+@PACKAGE_INIT@
+
+include("${CMAKE_CURRENT_LIST_DIR}/@package_export_name@.cmake")
+check_required_components("@PROJECT_NAME@")

MorphIO-2.7.1/3rdparty/GSL_LITE/gsl-lite.natvis

@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="utf-8"?>
+
+<!-- 
+    This will make GitHub and some editors recognize this code as XML: 
+    vim: syntax=xml
+-->
+<AutoVisualizer xmlns="http://schemas.microsoft.com/vstudio/debugger/natvis/2010">
+  <Type Name="gsl::fail_fast">
+    <!-- na hides the address, otherwise it would appear as 0x.... "Message" -->
+    <DisplayString>{_Data._What,nasb}</DisplayString>
+  </Type>
+
+  <Type Name="gsl::final_action&lt;*&gt;">
+    <DisplayString>{{ invoke = {invoke_}, action = {action_} }}</DisplayString>
+    <Expand>
+      <Item Name="[invoke]">invoke_</Item>
+      <Item Name="[callback]">action_</Item>
+    </Expand>
+  </Type>
+
+  <Type Name="gsl::span&lt;*&gt;">
+    <DisplayString>{{ size={last_ - first_} }}</DisplayString>
+    <Expand>
+      <Item Name="[size]">last_ - first_</Item>
+      <ArrayItems>
+        <Size>last_ - first_</Size>
+        <ValuePointer>first_</ValuePointer>
+      </ArrayItems>
+    </Expand>
+  </Type>
+
+  <Type Name="gsl::basic_string_span&lt;*&gt;">
+    <DisplayString>{span_.first_,[span_.last_ - span_.first_]na}</DisplayString>
+    <Expand>
+      <Item Name="[size]">span_.last_ - span_.first_</Item>
+      <ArrayItems>
+        <Size>span_.last_ - span_.first_</Size>
+        <ValuePointer>span_.first_</ValuePointer>
+      </ArrayItems>
+    </Expand>
+  </Type>
+
+  <Type Name="gsl::not_null&lt;*&gt;">
+    <DisplayString>value = {*ptr_}</DisplayString>
+  </Type>
+</AutoVisualizer>

MorphIO-2.7.1/3rdparty/GSL_LITE/include/gsl/gsl

@@ -0,0 +1,27 @@
+//
+// gsl-lite is based on GSL: Guideline Support Library.
+// For more information see https://github.com/martinmoene/gsl-lite
+//
+// Copyright (c) 2015 Martin Moene
+// Copyright (c) 2015 Microsoft Corporation. All rights reserved. 
+// 
+// This code is licensed under the MIT License (MIT). 
+// 
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 
+// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 
+// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 
+// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 
+// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 
+// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 
+// THE SOFTWARE. 
+
+// mimic MS include hierarchy
+
+#pragma once
+
+#ifndef GSL_GSL_H_INCLUDED
+#define GSL_GSL_H_INCLUDED
+
+#include "gsl-lite.hpp"
+
+#endif // GSL_GSL_H_INCLUDED