moose-classifier 0.13__tar.gz → 0.14__tar.gz

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Files changed (79) hide show
  1. {moose_classifier-0.13/src/moose_classifier.egg-info → moose_classifier-0.14}/PKG-INFO +1 -1
  2. {moose_classifier-0.13 → moose_classifier-0.14}/src/classify.py +1 -1
  3. {moose_classifier-0.13 → moose_classifier-0.14/src/moose_classifier.egg-info}/PKG-INFO +1 -1
  4. {moose_classifier-0.13 → moose_classifier-0.14}/.github/workflows/unnittests.yml +0 -0
  5. {moose_classifier-0.13 → moose_classifier-0.14}/.gitignore +0 -0
  6. {moose_classifier-0.13 → moose_classifier-0.14}/README.md +0 -0
  7. {moose_classifier-0.13 → moose_classifier-0.14}/pyproject.toml +0 -0
  8. {moose_classifier-0.13 → moose_classifier-0.14}/requirements.txt +0 -0
  9. {moose_classifier-0.13 → moose_classifier-0.14}/setup.cfg +0 -0
  10. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/Makefile +0 -0
  11. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/classifier.rst +0 -0
  12. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/conf.py +0 -0
  13. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/index.rst +0 -0
  14. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/make.bat +0 -0
  15. {moose_classifier-0.13 → moose_classifier-0.14}/sphinx/modules.rst +0 -0
  16. {moose_classifier-0.13 → moose_classifier-0.14}/src/lineages.py +0 -0
  17. {moose_classifier-0.13 → moose_classifier-0.14}/src/moose_classifier.egg-info/SOURCES.txt +0 -0
  18. {moose_classifier-0.13 → moose_classifier-0.14}/src/moose_classifier.egg-info/dependency_links.txt +0 -0
  19. {moose_classifier-0.13 → moose_classifier-0.14}/src/moose_classifier.egg-info/entry_points.txt +0 -0
  20. {moose_classifier-0.13 → moose_classifier-0.14}/src/moose_classifier.egg-info/requires.txt +0 -0
  21. {moose_classifier-0.13 → moose_classifier-0.14}/src/moose_classifier.egg-info/top_level.txt +0 -0
  22. {moose_classifier-0.13 → moose_classifier-0.14}/src/version.py +0 -0
  23. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/blast.csv.bz2 +0 -0
  24. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/blast_3strepto.csv +0 -0
  25. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/blast_extrafields.csv.bz2 +0 -0
  26. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/map.csv.bz2 +0 -0
  27. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/map_single.csv.bz2 +0 -0
  28. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/seq_info.csv.bz2 +0 -0
  29. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/taxonomy.csv.bz2 +0 -0
  30. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test01/classifications.csv.bz2 +0 -0
  31. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test01/details.csv.bz2 +0 -0
  32. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test02/classifications.csv.bz2 +0 -0
  33. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test02/details.csv.bz2 +0 -0
  34. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test02/map_single.csv.bz2 +0 -0
  35. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test03/classifications.csv.bz2 +0 -0
  36. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test03/details.csv.bz2 +0 -0
  37. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test06/classifications.csv.bz2 +0 -0
  38. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test06/details.csv.bz2 +0 -0
  39. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test06/map.csv.bz2 +0 -0
  40. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/blast.csv.bz2 +0 -0
  41. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/classifications.csv.bz2 +0 -0
  42. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/details.csv.bz2 +0 -0
  43. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/map.csv.bz2 +0 -0
  44. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/seq_info.csv.bz2 +0 -0
  45. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test07/taxonomy.csv.bz2 +0 -0
  46. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test08/classifications.csv.bz2 +0 -0
  47. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test08/details.csv.bz2 +0 -0
  48. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test09/blast.csv.bz2 +0 -0
  49. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test09/classifications.csv.bz2 +0 -0
  50. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test09/details.csv.bz2 +0 -0
  51. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test09/map.csv.bz2 +0 -0
  52. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test10/classifications.csv.bz2 +0 -0
  53. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test10/details.csv.bz2 +0 -0
  54. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test11/blast.csv.bz2 +0 -0
  55. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test11/classifications.csv.bz2 +0 -0
  56. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test11/details.csv.bz2 +0 -0
  57. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test11/seq_info.csv.bz2 +0 -0
  58. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test11/taxonomy.csv.bz2 +0 -0
  59. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test12/map_single.csv.bz2 +0 -0
  60. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test13/blast.csv.bz2 +0 -0
  61. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test13/classifications.csv.bz2 +0 -0
  62. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test13/seq_info.csv.bz2 +0 -0
  63. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test13/weights.csv.bz2 +0 -0
  64. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test14/classifications.csv.bz2 +0 -0
  65. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test14/details.csv.bz2 +0 -0
  66. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test15/classifications.csv.bz2 +0 -0
  67. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test15/details.csv.bz2 +0 -0
  68. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test16/classifications.csv.bz2 +0 -0
  69. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test16/details.csv.bz2 +0 -0
  70. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test17/classifications.csv.bz2 +0 -0
  71. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test17/details.csv.bz2 +0 -0
  72. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test18/classifications.csv.bz2 +0 -0
  73. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/test18/details.csv.bz2 +0 -0
  74. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/TestClassify/weights.csv.bz2 +0 -0
  75. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/rank_thresholds.csv +0 -0
  76. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/rrnDB_16S_copy_num.csv.bz2 +0 -0
  77. {moose_classifier-0.13 → moose_classifier-0.14}/testfiles/taxonomy.csv.bz2 +0 -0
  78. {moose_classifier-0.13 → moose_classifier-0.14}/tests/__init__.py +0 -0
  79. {moose_classifier-0.13 → moose_classifier-0.14}/tests/test_classify.py +0 -0
{moose_classifier-0.13/src/moose_classifier.egg-info → moose_classifier-0.14}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: moose_classifier
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- Version: 0.13
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+ Version: 0.14
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  Summary: Alignment based taxonomic classifier
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  Author: Chris Rosenthal
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  Author-email: crosenth@gmail.com
{moose_classifier-0.13 → moose_classifier-0.14}/src/classify.py RENAMED
@@ -494,7 +494,7 @@ def action(args):
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  aligns[rank + '_id'] = aligns.merge(
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  lineages, left_on='tax_id',
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  right_index=True,
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- how='left')[rank].fillna(0)
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+ how='left')[rank].fillna('0')
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  aligns[rank + '_name'] = aligns.merge(
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  lineages,
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  left_on=rank + '_id',
{moose_classifier-0.13 → moose_classifier-0.14/src/moose_classifier.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: moose_classifier
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- Version: 0.13
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+ Version: 0.14
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  Summary: Alignment based taxonomic classifier
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  Author: Chris Rosenthal
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  Author-email: crosenth@gmail.com