moose-classifier 0.11__tar.gz → 0.12__tar.gz

{moose_classifier-0.11 → moose_classifier-0.12}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: moose_classifier
-Version: 0.11
+Version: 0.12
 Summary: Alignment based taxonomic classifier
 Author: Chris Rosenthal
 Author-email: crosenth@gmail.com
@@ -690,6 +690,7 @@ Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: pandas>=2.0.2
+Dynamic: license-file
 
 # moose
 

{moose_classifier-0.11 → moose_classifier-0.12}/pyproject.toml

@@ -20,7 +20,7 @@ license = {file = "LICENSE"}
 name = "moose_classifier"
 readme = "README.md"
 requires-python = ">=3.7"
-version = "0.11"
+version = "0.12"
 
 [project.urls]
 repository = "https://github.com/crosenth/moose"

{moose_classifier-0.11 → moose_classifier-0.12}/src/classify.py

@@ -412,7 +412,8 @@ def action(args):
             'threshold_level', 'assignment_level',
             'threshold_level_threshold', 'assignment_level_threshold']
         return_cols = ['assignment_threshold', 'best_hit']
-        best_hits[return_cols] = spec_group[sub_cols].apply(select_best_hits)
+        best_hits.loc[:, return_cols] = spec_group[sub_cols].apply(
+            select_best_hits)
         best_hits = best_hits[best_hits['best_hit']]
 
     if args.hits_below_threshold:
@@ -506,20 +507,16 @@ def action(args):
     qseqids['assignment_hash'] = 0
     qseqids['assignment_tax_name'] = ''
     qseqids['assignment_rank'] = ''
+    qseqids['assignment_rank'] = qseqids['assignment_rank'].astype(cat_ranks)
     qseqids['assignment_threshold'] = numpy.nan
     qseqids['condensed_id'] = ''
     qseqids['condensed_rank'] = ''
+    qseqids['condensed_rank'] = qseqids['condensed_rank'].astype(cat_ranks)
     qseqids['starred'] = ''
 
-    if aligns.empty:
-        dtypes = qseqids.dtypes
-    else:
-        dtypes = aligns.dtypes
-
     # add back qseqids that have no hits back into aligns
     if not qseqids.empty:
         aligns = pd.concat([aligns, qseqids])
-    aligns = aligns.astype(dtypes)
 
     # concludes our alignment details, on to output summary
     logging.info('summarizing output')

{moose_classifier-0.11 → moose_classifier-0.12}/src/moose_classifier.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: moose_classifier
-Version: 0.11
+Version: 0.12
 Summary: Alignment based taxonomic classifier
 Author: Chris Rosenthal
 Author-email: crosenth@gmail.com
@@ -690,6 +690,7 @@ Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: pandas>=2.0.2
+Dynamic: license-file
 
 # moose