monai-weekly 1.5.dev2505__tar.gz → 1.5.dev2506__tar.gz

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: monai-weekly
-Version: 1.5.dev2505
+Version: 1.5.dev2506
 Summary: AI Toolkit for Healthcare Imaging
 Home-page: https://monai.io/
 Author: MONAI Consortium

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai/__init__.py

@@ -136,4 +136,4 @@ except BaseException:
 
     if MONAIEnvVars.debug():
         raise
-__commit_id__ = "8ac8e0d52dced4667fcc73812e012078a35e3359"
+__commit_id__ = "8dcb9dc0e594059d87ce9882c20fe5a59340a6b2"

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-02-02T02:25:03+0000",
+ "date": "2025-02-09T02:26:31+0000",
  "dirty": false,
  "error": null,
- "full-revisionid": "14c70f52e658772747b5703b83008afc2a9c26a7",
- "version": "1.5.dev2505"
+ "full-revisionid": "5d0616a0fd56273619eb40ed1e6a22683d697f60",
+ "version": "1.5.dev2506"
 }
 '''  # END VERSION_JSON
 

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai/data/meta_tensor.py

@@ -607,3 +607,8 @@ class MetaTensor(MetaObj, torch.Tensor):
         print(self)
         if self.meta is not None:
             print(self.meta.__repr__())
+
+
+# needed in later versions of Pytorch to indicate the class is safe for serialisation
+if hasattr(torch.serialization, "add_safe_globals"):
+    torch.serialization.add_safe_globals([MetaTensor])

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai/utils/jupyter_utils.py

@@ -234,7 +234,7 @@ def plot_engine_status(
 
 
 def _get_loss_from_output(
-    output: list[torch.Tensor | dict[str, torch.Tensor]] | dict[str, torch.Tensor] | torch.Tensor
+    output: list[torch.Tensor | dict[str, torch.Tensor]] | dict[str, torch.Tensor] | torch.Tensor,
 ) -> torch.Tensor:
     """Returns a single value from the network output, which is a dict or tensor."""
 

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai/visualize/img2tensorboard.py

@@ -65,11 +65,11 @@ def _image3_animated_gif(
     img_str = b""
     for b_data in PIL.GifImagePlugin.getheader(ims[0])[0]:
         img_str += b_data
-    img_str += b"\x21\xFF\x0B\x4E\x45\x54\x53\x43\x41\x50" b"\x45\x32\x2E\x30\x03\x01\x00\x00\x00"
+    img_str += b"\x21\xff\x0b\x4e\x45\x54\x53\x43\x41\x50" b"\x45\x32\x2e\x30\x03\x01\x00\x00\x00"
     for i in ims:
         for b_data in PIL.GifImagePlugin.getdata(i):
             img_str += b_data
-    img_str += b"\x3B"
+    img_str += b"\x3b"
 
     summary = SummaryX if has_tensorboardx and isinstance(writer, SummaryWriterX) else Summary
     summary_image_str = summary.Image(height=10, width=10, colorspace=1, encoded_image_string=img_str)

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/monai_weekly.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: monai-weekly
-Version: 1.5.dev2505
+Version: 1.5.dev2506
 Summary: AI Toolkit for Healthcare Imaging
 Home-page: https://monai.io/
 Author: MONAI Consortium

{monai_weekly-1.5.dev2505 → monai_weekly-1.5.dev2506}/tests/test_zarr_avg_merger.py

@@ -260,32 +260,33 @@ TEST_CASE_17_WITHOUT_LOCK = [
     TENSOR_4x4,
 ]
 
+ALL_TESTS = [
+    TEST_CASE_0_DEFAULT_DTYPE,
+    TEST_CASE_1_DEFAULT_DTYPE,
+    TEST_CASE_2_DEFAULT_DTYPE,
+    TEST_CASE_3_DEFAULT_DTYPE,
+    TEST_CASE_4_DEFAULT_DTYPE,
+    TEST_CASE_5_VALUE_DTYPE,
+    TEST_CASE_6_COUNT_DTYPE,
+    TEST_CASE_7_COUNT_VALUE_DTYPE,
+    TEST_CASE_8_DTYPE,
+    TEST_CASE_9_LARGER_SHAPE,
+    TEST_CASE_10_DIRECTORY_STORE,
+    TEST_CASE_11_MEMORY_STORE,
+    TEST_CASE_12_CHUNKS,
+    TEST_CASE_16_WITH_LOCK,
+    TEST_CASE_17_WITHOUT_LOCK,
+]
+
+# add compression tests only when using Zarr version before 3.0
+if not version_geq(get_package_version("zarr"), "3.0.0"):
+    ALL_TESTS += [TEST_CASE_13_COMPRESSOR_LZ4, TEST_CASE_14_COMPRESSOR_PICKLE, TEST_CASE_15_COMPRESSOR_LZMA]
+
 
 @unittest.skipUnless(has_zarr and has_numcodecs, "Requires zarr (and numcodecs) packages.)")
 class ZarrAvgMergerTests(unittest.TestCase):
 
-    @parameterized.expand(
-        [
-            TEST_CASE_0_DEFAULT_DTYPE,
-            TEST_CASE_1_DEFAULT_DTYPE,
-            TEST_CASE_2_DEFAULT_DTYPE,
-            TEST_CASE_3_DEFAULT_DTYPE,
-            TEST_CASE_4_DEFAULT_DTYPE,
-            TEST_CASE_5_VALUE_DTYPE,
-            TEST_CASE_6_COUNT_DTYPE,
-            TEST_CASE_7_COUNT_VALUE_DTYPE,
-            TEST_CASE_8_DTYPE,
-            TEST_CASE_9_LARGER_SHAPE,
-            TEST_CASE_10_DIRECTORY_STORE,
-            TEST_CASE_11_MEMORY_STORE,
-            TEST_CASE_12_CHUNKS,
-            TEST_CASE_13_COMPRESSOR_LZ4,
-            TEST_CASE_14_COMPRESSOR_PICKLE,
-            TEST_CASE_15_COMPRESSOR_LZMA,
-            TEST_CASE_16_WITH_LOCK,
-            TEST_CASE_17_WITHOUT_LOCK,
-        ]
-    )
+    @parameterized.expand(ALL_TESTS)
     def test_zarr_avg_merger_patches(self, arguments, patch_locations, expected):
         codec_reg = numcodecs.registry.codec_registry
         if "compressor" in arguments: