monai-weekly 1.4.dev2441__tar.gz → 1.5.dev2443__tar.gz

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: monai-weekly
-Version: 1.4.dev2441
+Version: 1.5.dev2443
 Summary: AI Toolkit for Healthcare Imaging
 Home-page: https://monai.io/
 Author: MONAI Consortium
@@ -171,11 +171,11 @@ Requires-Dist: pyamg>=5.0.0; extra == "pyamg"
 [![codecov](https://codecov.io/gh/Project-MONAI/MONAI/branch/dev/graph/badge.svg?token=6FTC7U1JJ4)](https://codecov.io/gh/Project-MONAI/MONAI)
 [![monai Downloads Last Month](https://assets.piptrends.com/get-last-month-downloads-badge/monai.svg 'monai Downloads Last Month by pip Trends')](https://piptrends.com/package/monai)
 
-MONAI is a [PyTorch](https://pytorch.org/)-based, [open-source](https://github.com/Project-MONAI/MONAI/blob/dev/LICENSE) framework for deep learning in healthcare imaging, part of [PyTorch Ecosystem](https://pytorch.org/ecosystem/).
-Its ambitions are:
-- developing a community of academic, industrial and clinical researchers collaborating on a common foundation;
-- creating state-of-the-art, end-to-end training workflows for healthcare imaging;
-- providing researchers with the optimized and standardized way to create and evaluate deep learning models.
+MONAI is a [PyTorch](https://pytorch.org/)-based, [open-source](https://github.com/Project-MONAI/MONAI/blob/dev/LICENSE) framework for deep learning in healthcare imaging, part of the [PyTorch Ecosystem](https://pytorch.org/ecosystem/).
+Its ambitions are as follows:
+- Developing a community of academic, industrial and clinical researchers collaborating on a common foundation;
+- Creating state-of-the-art, end-to-end training workflows for healthcare imaging;
+- Providing researchers with the optimized and standardized way to create and evaluate deep learning models.
 
 
 ## Features

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/README.md

@@ -16,11 +16,11 @@
 [![codecov](https://codecov.io/gh/Project-MONAI/MONAI/branch/dev/graph/badge.svg?token=6FTC7U1JJ4)](https://codecov.io/gh/Project-MONAI/MONAI)
 [![monai Downloads Last Month](https://assets.piptrends.com/get-last-month-downloads-badge/monai.svg 'monai Downloads Last Month by pip Trends')](https://piptrends.com/package/monai)
 
-MONAI is a [PyTorch](https://pytorch.org/)-based, [open-source](https://github.com/Project-MONAI/MONAI/blob/dev/LICENSE) framework for deep learning in healthcare imaging, part of [PyTorch Ecosystem](https://pytorch.org/ecosystem/).
-Its ambitions are:
-- developing a community of academic, industrial and clinical researchers collaborating on a common foundation;
-- creating state-of-the-art, end-to-end training workflows for healthcare imaging;
-- providing researchers with the optimized and standardized way to create and evaluate deep learning models.
+MONAI is a [PyTorch](https://pytorch.org/)-based, [open-source](https://github.com/Project-MONAI/MONAI/blob/dev/LICENSE) framework for deep learning in healthcare imaging, part of the [PyTorch Ecosystem](https://pytorch.org/ecosystem/).
+Its ambitions are as follows:
+- Developing a community of academic, industrial and clinical researchers collaborating on a common foundation;
+- Creating state-of-the-art, end-to-end training workflows for healthcare imaging;
+- Providing researchers with the optimized and standardized way to create and evaluate deep learning models.
 
 
 ## Features

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/__init__.py

@@ -11,12 +11,12 @@
 
 from __future__ import annotations
 
+import logging
 import os
 import sys
-import logging
 import warnings
-from ._version import get_versions
 
+from ._version import get_versions
 
 old_showwarning = warnings.showwarning
 
@@ -136,4 +136,4 @@ except BaseException:
 
     if MONAIEnvVars.debug():
         raise
-__commit_id__ = "796271ccd4ee48065af3b2afd56bf46960a53112"
+__commit_id__ = "82298adb01c27a6cbf0bf10a9916b09b41966bb0"

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2024-10-13T02:28:40+0000",
+ "date": "2024-10-27T02:29:25+0000",
  "dirty": false,
  "error": null,
- "full-revisionid": "cf815ed4e44a5b8ce67e894ab0bc2765279a1a59",
- "version": "1.4.dev2441"
+ "full-revisionid": "d508ba780862a6459326c812e09188838c25bdc5",
+ "version": "1.5.dev2443"
 }
 '''  # END VERSION_JSON
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/detection/networks/retinanet_network.py

@@ -42,7 +42,7 @@ from __future__ import annotations
 import math
 import warnings
 from collections.abc import Callable, Sequence
-from typing import Any, Dict
+from typing import Any
 
 import torch
 from torch import Tensor, nn
@@ -330,7 +330,7 @@ class RetinaNet(nn.Module):
         features = self.feature_extractor(images)
         if isinstance(features, Tensor):
             feature_maps = [features]
-        elif torch.jit.isinstance(features, Dict[str, Tensor]):
+        elif torch.jit.isinstance(features, dict[str, Tensor]):
             feature_maps = list(features.values())
         else:
             feature_maps = list(features)

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/detection/transforms/array.py

@@ -15,7 +15,8 @@ https://github.com/Project-MONAI/MONAI/wiki/MONAI_Design
 
 from __future__ import annotations
 
-from typing import Any, Sequence
+from collections.abc import Sequence
+from typing import Any
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/generation/maisi/networks/autoencoderkl_maisi.py

@@ -13,7 +13,7 @@ from __future__ import annotations
 
 import gc
 import logging
-from typing import Sequence
+from collections.abc import Sequence
 
 import torch
 import torch.nn as nn

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/generation/maisi/networks/controlnet_maisi.py

@@ -11,7 +11,7 @@
 
 from __future__ import annotations
 
-from typing import Sequence
+from collections.abc import Sequence
 
 import torch
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/pathology/engines/utils.py

@@ -11,7 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Sequence
+from collections.abc import Sequence
+from typing import Any
 
 import torch
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/pathology/inferers/inferer.py

@@ -11,7 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Callable, Sequence
+from collections.abc import Sequence
+from typing import Any, Callable
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/pathology/metrics/lesion_froc.py

@@ -11,7 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any, Iterable
+from collections.abc import Iterable
+from typing import TYPE_CHECKING, Any
 
 import numpy as np
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/pathology/transforms/post/array.py

@@ -12,7 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import Callable, Sequence
+from collections.abc import Sequence
+from typing import Callable
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/tcia/utils.py

@@ -12,7 +12,7 @@
 from __future__ import annotations
 
 import os
-from typing import Iterable
+from collections.abc import Iterable
 
 import monai
 from monai.config.type_definitions import PathLike

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/utils.py

@@ -136,10 +136,7 @@ def check_hash(filepath: PathLike, val: str | None = None, hash_type: str = "md5
         return True
     actual_hash_func = look_up_option(hash_type.lower(), SUPPORTED_HASH_TYPES)
 
-    if sys.version_info >= (3, 9):
-        actual_hash = actual_hash_func(usedforsecurity=False)  # allows checks on FIPS enabled machines
-    else:
-        actual_hash = actual_hash_func()
+    actual_hash = actual_hash_func(usedforsecurity=False)  # allows checks on FIPS enabled machines
 
     try:
         with open(filepath, "rb") as f:

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/apps/vista3d/transforms.py

@@ -12,7 +12,7 @@
 from __future__ import annotations
 
 import warnings
-from typing import Sequence
+from collections.abc import Sequence
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/bundle/reference_resolver.py

@@ -13,8 +13,8 @@ from __future__ import annotations
 
 import re
 import warnings
-from collections.abc import Sequence
-from typing import Any, Iterator
+from collections.abc import Iterator, Sequence
+from typing import Any
 
 from monai.bundle.config_item import ConfigComponent, ConfigExpression, ConfigItem
 from monai.bundle.utils import DEPRECATED_ID_MAPPING, ID_REF_KEY, ID_SEP_KEY

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/bundle/scripts.py

@@ -1945,7 +1945,6 @@ def create_workflow(
 
     """
     _args = update_kwargs(args=args_file, workflow_name=workflow_name, config_file=config_file, **kwargs)
-    _log_input_summary(tag="run", args=_args)
     (workflow_name, config_file) = _pop_args(
         _args, workflow_name=ConfigWorkflow, config_file=None
     )  # the default workflow name is "ConfigWorkflow"
@@ -1969,7 +1968,7 @@ def create_workflow(
         workflow_ = workflow_class(**_args)
 
     workflow_.initialize()
-
+    _log_input_summary(tag="run", args=_args)
     return workflow_
 
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/bundle/workflows.py

@@ -16,10 +16,11 @@ import os
 import sys
 import time
 from abc import ABC, abstractmethod
+from collections.abc import Sequence
 from copy import copy
 from logging.config import fileConfig
 from pathlib import Path
-from typing import Any, Sequence
+from typing import Any
 
 from monai.apps.utils import get_logger
 from monai.bundle.config_parser import ConfigParser
@@ -316,8 +317,8 @@ class ConfigWorkflow(BundleWorkflow):
                 else:
                     raise FileNotFoundError(f"Cannot find the logging config file: {logging_file}.")
             else:
-                logger.info(f"Setting logging properties based on config: {logging_file}.")
                 fileConfig(str(logging_file), disable_existing_loggers=False)
+                logger.info(f"Setting logging properties based on config: {logging_file}.")
 
         self.parser = ConfigParser()
         self.parser.read_config(f=config_file)

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/config/type_definitions.py

@@ -12,7 +12,8 @@
 from __future__ import annotations
 
 import os
-from typing import Collection, Hashable, Iterable, Sequence, TypeVar, Union
+from collections.abc import Collection, Hashable, Iterable, Sequence
+from typing import TypeVar, Union
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/data/dataset.py

@@ -22,6 +22,7 @@ import time
 import warnings
 from collections.abc import Callable, Sequence
 from copy import copy, deepcopy
+from inspect import signature
 from multiprocessing.managers import ListProxy
 from multiprocessing.pool import ThreadPool
 from pathlib import Path
@@ -371,7 +372,10 @@ class PersistentDataset(Dataset):
 
         if hashfile is not None and hashfile.is_file():  # cache hit
             try:
-                return torch.load(hashfile)
+                if "weights_only" in signature(torch.load).parameters:
+                    return torch.load(hashfile, weights_only=False)
+                else:
+                    return torch.load(hashfile)
             except PermissionError as e:
                 if sys.platform != "win32":
                     raise e
@@ -1670,4 +1674,7 @@ class GDSDataset(PersistentDataset):
         if meta_hash_file_name in self._meta_cache:
             return self._meta_cache[meta_hash_file_name]
         else:
-            return torch.load(self.cache_dir / meta_hash_file_name)
+            if "weights_only" in signature(torch.load).parameters:
+                return torch.load(self.cache_dir / meta_hash_file_name, weights_only=False)
+            else:
+                return torch.load(self.cache_dir / meta_hash_file_name)

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/data/meta_obj.py

@@ -13,8 +13,9 @@ from __future__ import annotations
 
 import itertools
 import pprint
+from collections.abc import Iterable
 from copy import deepcopy
-from typing import Any, Iterable
+from typing import Any
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/data/meta_tensor.py

@@ -13,8 +13,9 @@ from __future__ import annotations
 
 import functools
 import warnings
+from collections.abc import Sequence
 from copy import deepcopy
-from typing import Any, Sequence
+from typing import Any
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/engines/evaluator.py

@@ -12,7 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable, Iterable, Sequence
+from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.utils.data import DataLoader

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/engines/trainer.py

@@ -12,7 +12,8 @@
 from __future__ import annotations
 
 import warnings
-from typing import TYPE_CHECKING, Any, Callable, Iterable, Sequence
+from collections.abc import Iterable, Sequence
+from typing import TYPE_CHECKING, Any, Callable
 
 import torch
 from torch.optim.optimizer import Optimizer

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/engines/utils.py

@@ -12,8 +12,8 @@
 from __future__ import annotations
 
 from abc import ABC, abstractmethod
-from collections.abc import Callable, Sequence
-from typing import TYPE_CHECKING, Any, Mapping, cast
+from collections.abc import Callable, Mapping, Sequence
+from typing import TYPE_CHECKING, Any, cast
 
 import torch
 import torch.nn as nn

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/handlers/clearml_handlers.py

@@ -11,7 +11,8 @@
 
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Any, Mapping, Sequence
+from collections.abc import Mapping, Sequence
+from typing import TYPE_CHECKING, Any
 
 from monai.utils import optional_import
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/handlers/stats_handler.py

@@ -74,7 +74,7 @@ class StatsHandler:
         output_transform: Callable = lambda x: x[0],
         global_epoch_transform: Callable = lambda x: x,
         state_attributes: Sequence[str] | None = None,
-        name: str | None = "StatsHandler",
+        name: str | None = "monai.handlers.StatsHandler",
         tag_name: str = DEFAULT_TAG,
         key_var_format: str = DEFAULT_KEY_VAL_FORMAT,
     ) -> None:

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/inferers/utils.py

@@ -12,8 +12,8 @@
 from __future__ import annotations
 
 import itertools
-from collections.abc import Callable, Mapping, Sequence
-from typing import Any, Iterable
+from collections.abc import Callable, Iterable, Mapping, Sequence
+from typing import Any
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/losses/hausdorff_loss.py

@@ -79,7 +79,7 @@ class HausdorffDTLoss(_Loss):
                 Incompatible values.
 
         """
-        super(HausdorffDTLoss, self).__init__(reduction=LossReduction(reduction).value)
+        super().__init__(reduction=LossReduction(reduction).value)
         if other_act is not None and not callable(other_act):
             raise TypeError(f"other_act must be None or callable but is {type(other_act).__name__}.")
         if int(sigmoid) + int(softmax) > 1:

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/metrics/fid.py

@@ -82,7 +82,7 @@ def _cov(input_data: torch.Tensor, rowvar: bool = True) -> torch.Tensor:
 
 def _sqrtm(input_data: torch.Tensor) -> torch.Tensor:
     """Compute the square root of a matrix."""
-    scipy_res, _ = scipy.linalg.sqrtm(input_data.detach().cpu().numpy().astype(np.float_), disp=False)
+    scipy_res, _ = scipy.linalg.sqrtm(input_data.detach().cpu().numpy().astype(np.float64), disp=False)
     return torch.from_numpy(scipy_res)
 
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/metrics/utils.py

@@ -12,9 +12,10 @@
 from __future__ import annotations
 
 import warnings
+from collections.abc import Iterable, Sequence
 from functools import lru_cache, partial
 from types import ModuleType
-from typing import Any, Iterable, Sequence
+from typing import Any
 
 import numpy as np
 import torch

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/blocks/spatialattention.py

@@ -17,9 +17,6 @@ import torch
 import torch.nn as nn
 
 from monai.networks.blocks import SABlock
-from monai.utils import optional_import
-
-Rearrange, _ = optional_import("einops.layers.torch", name="Rearrange")
 
 
 class SpatialAttentionBlock(nn.Module):
@@ -74,24 +71,10 @@ class SpatialAttentionBlock(nn.Module):
 
     def forward(self, x: torch.Tensor):
         residual = x
-
-        if self.spatial_dims == 1:
-            h = x.shape[2]
-            rearrange_input = Rearrange("b c h -> b h c")
-            rearrange_output = Rearrange("b h c -> b c h", h=h)
-        if self.spatial_dims == 2:
-            h, w = x.shape[2], x.shape[3]
-            rearrange_input = Rearrange("b c h w -> b (h w) c")
-            rearrange_output = Rearrange("b (h w) c -> b c h w", h=h, w=w)
-        else:
-            h, w, d = x.shape[2], x.shape[3], x.shape[4]
-            rearrange_input = Rearrange("b c h w d -> b (h w d) c")
-            rearrange_output = Rearrange("b (h w d) c -> b c h w d", h=h, w=w, d=d)
-
+        shape = x.shape
         x = self.norm(x)
-        x = rearrange_input(x)  # B x (x_dim * y_dim [ * z_dim]) x C
-
+        x = x.reshape(*shape[:2], -1).transpose(1, 2)  # "b c h w d -> b (h w d) c"
         x = self.attn(x)
-        x = rearrange_output(x)  # B x  x C x x_dim * y_dim * [z_dim]
+        x = x.transpose(1, 2).reshape(shape)  # "b (h w d) c -> b c h w d"
         x = x + residual
         return x

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/nets/segresnet_ds.py

@@ -508,8 +508,10 @@ class SegResNetDS2(SegResNetDS):
 
         outputs: list[torch.Tensor] = []
         outputs_auto: list[torch.Tensor] = []
-        x_ = x.clone()
+        x_ = x
         if with_point:
+            if with_label:
+                x_ = x.clone()
             i = 0
             for level in self.up_layers:
                 x = level["upsample"](x)

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/nets/swin_unetr.py

@@ -13,6 +13,7 @@ from __future__ import annotations
 
 import itertools
 from collections.abc import Sequence
+from typing import Final
 
 import numpy as np
 import torch
@@ -20,7 +21,6 @@ import torch.nn as nn
 import torch.nn.functional as F
 import torch.utils.checkpoint as checkpoint
 from torch.nn import LayerNorm
-from typing_extensions import Final
 
 from monai.networks.blocks import MLPBlock as Mlp
 from monai.networks.blocks import PatchEmbed, UnetOutBlock, UnetrBasicBlock, UnetrUpBlock

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/nets/vista3d.py

@@ -639,12 +639,10 @@ class ClassMappingClassify(nn.Module):
         if self.use_mlp:
             class_embedding = self.mlp(class_embedding)
         # [b,1,feat] @ [1,feat,dim], batch dimension become class_embedding batch dimension.
-        masks = []
-        for i in range(b):
-            mask = class_embedding @ src[[i]].view(1, c, h * w * d)
-            masks.append(mask.view(-1, 1, h, w, d))
+        masks_embedding = class_embedding.squeeze() @ src.view(b, c, h * w * d)
+        masks_embedding = masks_embedding.view(b, -1, h, w, d).transpose(0, 1)
 
-        return torch.cat(masks, 1), class_embedding
+        return masks_embedding, class_embedding
 
 
 class TwoWayTransformer(nn.Module):

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/schedulers/ddim.py

@@ -220,7 +220,7 @@ class DDIMScheduler(Scheduler):
         if eta > 0:
             # randn_like does not support generator https://github.com/pytorch/pytorch/issues/27072
             device: torch.device = torch.device(model_output.device if torch.is_tensor(model_output) else "cpu")
-            noise = torch.randn(model_output.shape, dtype=model_output.dtype, generator=generator).to(device)
+            noise = torch.randn(model_output.shape, dtype=model_output.dtype, generator=generator, device=device)
             variance = self._get_variance(timestep, prev_timestep) ** 0.5 * eta * noise
 
             pred_prev_sample = pred_prev_sample + variance

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/schedulers/ddpm.py

@@ -241,8 +241,12 @@ class DDPMScheduler(Scheduler):
         variance = 0
         if timestep > 0:
             noise = torch.randn(
-                model_output.size(), dtype=model_output.dtype, layout=model_output.layout, generator=generator
-            ).to(model_output.device)
+                model_output.size(),
+                dtype=model_output.dtype,
+                layout=model_output.layout,
+                generator=generator,
+                device=model_output.device,
+            )
             variance = (self._get_variance(timestep, predicted_variance=predicted_variance) ** 0.5) * noise
 
         pred_prev_sample = pred_prev_sample + variance

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/trt_compiler.py

@@ -115,7 +115,7 @@ class TRTEngine:
           logger: optional logger object
         """
         self.plan_path = plan_path
-        self.logger = logger or get_logger("trt_compile")
+        self.logger = logger or get_logger("monai.networks.trt_compiler")
         self.logger.info(f"Loading TensorRT engine: {self.plan_path}")
         self.engine = engine_from_bytes(bytes_from_path(self.plan_path))
         self.tensors = OrderedDict()
@@ -288,7 +288,7 @@ class TrtCompiler:
         self.fallback = fallback
         self.disabled = False
 
-        self.logger = logger or get_logger("trt_compile")
+        self.logger = logger or get_logger("monai.networks.trt_compiler")
 
         # Normally we read input_names from forward() but can be overridden
         if input_names is None:
@@ -563,7 +563,7 @@ def trt_compile(
         else:
             wrap(model, base_path)
     else:
-        logger = logger or get_logger("trt_compile")
+        logger = logger or get_logger("monai.networks.trt_compiler")
         logger.warning("TensorRT and/or polygraphy packages are not available! trt_compile() has no effect.")
 
     return model

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/networks/utils.py

@@ -697,7 +697,7 @@ def convert_to_onnx(
         torch.onnx.export(
             mode_to_export,
             onnx_inputs,
-            f=f,
+            f=f,  # type: ignore[arg-type]
             input_names=input_names,
             output_names=output_names,
             dynamic_axes=dynamic_axes,

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/transforms/intensity/dictionary.py

@@ -17,7 +17,8 @@ Class names are ended with 'd' to denote dictionary-based transforms.
 
 from __future__ import annotations
 
-from typing import Callable, Hashable, Mapping, Sequence
+from collections.abc import Hashable, Mapping, Sequence
+from typing import Callable
 
 import numpy as np
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/transforms/lazy/functional.py

@@ -11,7 +11,8 @@
 
 from __future__ import annotations
 
-from typing import Any, Mapping, Sequence
+from collections.abc import Mapping, Sequence
+from typing import Any
 
 import torch
 

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/transforms/regularization/array.py

@@ -112,6 +112,11 @@ class CutMix(Mixer):
         the mixing weight but also the size of the random rectangles used during for mixing.
         Please refer to the paper for details.
 
+        Please note that there is a change in behavior starting from version 1.4.0. In the previous
+        implementation, the transform would generate a different label each time it was called.
+        To ensure determinism, the new implementation will now generate the same label for
+        the same input image when using the same operation.
+
         The most common use case is something close to:
 
     .. code-block:: python

{monai_weekly-1.4.dev2441 → monai_weekly-1.5.dev2443}/monai/transforms/spatial/array.py

@@ -15,10 +15,10 @@ A collection of "vanilla" transforms for spatial operations.
 from __future__ import annotations
 
 import warnings
-from collections.abc import Callable
+from collections.abc import Callable, Sequence
 from copy import deepcopy
 from itertools import zip_longest
-from typing import Any, Optional, Sequence, Tuple, Union, cast
+from typing import Any, Optional, Union, cast
 
 import numpy as np
 import torch
@@ -116,7 +116,7 @@ __all__ = [
     "RandSimulateLowResolution",
 ]
 
-RandRange = Optional[Union[Sequence[Union[Tuple[float, float], float]], float]]
+RandRange = Optional[Union[Sequence[Union[tuple[float, float], float]], float]]
 
 
 class SpatialResample(InvertibleTransform, LazyTransform):