modulector-sdk 2.5.2__tar.gz → 2.6.1__tar.gz

{modulector_sdk-2.5.2 → modulector_sdk-2.6.1}/LICENSE

@@ -1,21 +1,21 @@
-MIT License
-
-Copyright (c) 2026 omicsdatascience
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
+MIT License
+
+Copyright (c) 2026 omicsdatascience
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

{modulector_sdk-2.5.2/src/modulector_sdk.egg-info → modulector_sdk-2.6.1}/PKG-INFO

@@ -1,115 +1,117 @@
-Metadata-Version: 2.4
-Name: modulector-sdk
-Version: 2.5.2
-Summary: Typed Python SDK for the Modulector API.
-Author: omicsdatascience
-License-Expression: MIT
-Project-URL: API, https://modulector.multiomix.org/
-Project-URL: Homepage, https://modulector.multiomix.org/
-Project-URL: Issues, https://github.com/omics-datascience/modulector/issues
-Project-URL: Repository, https://github.com/omics-datascience/modulector
-Keywords: api-client,bioinformatics,methylation,mirna,sdk
-Classifier: Development Status :: 4 - Beta
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
-Classifier: Programming Language :: Python :: 3.14
-Classifier: Topic :: Internet :: WWW/HTTP
-Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Classifier: Typing :: Typed
-Requires-Python: >=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: mcp==1.27.2
-Requires-Dist: requests==2.31.0
-Dynamic: license-file
-
-# Modulector SDK
-
-Typed Python SDK for the Modulector API. The package contains client helpers for
-querying miRNA target interactions, miRNA aliases, methylation sites, disease
-associations, drug associations, and PubMed subscriptions without installing the
-Django backend dependencies.
-
-## Installation
-
-```bash
-pip install modulector-sdk
-```
-
-## Usage
-
-```python
-from modulector_sdk import get_mirna_details, get_mirna_target_interactions
-
-details = get_mirna_details("hsa-miR-21-5p")
-interactions = get_mirna_target_interactions(
-    mirna="hsa-miR-21-5p",
-    gene="PTEN",
-    include_pubmeds=True,
-)
-```
-
-Set `MODULECTOR_API_BASE_URL` to target a different Modulector deployment:
-
-```bash
-MODULECTOR_API_BASE_URL=https://your-modulector.example.org python script.py
-```
-
-Every service function also accepts a `base_url` keyword argument for
-per-request overrides.
-
-## MCP server
-
-The SDK also installs a Model Context Protocol server that exposes the same
-service functions as LLM-callable tools.
-
-For local stdio MCP clients:
-
-```bash
-modulector-mcp
-```
-
-Example client configuration:
-
-```json
-{
-  "mcpServers": {
-    "modulector": {
-      "command": "modulector-mcp"
-    }
-  }
-}
-```
-
-For Streamable HTTP clients:
-
-```bash
-modulector-mcp --transport streamable-http --host 127.0.0.1 --port 8000
-```
-
-Then connect the client to `http://127.0.0.1:8000/mcp`.
-
-The server includes tools for miRNA target interactions, miRNA details and
-aliases, miRNA identifier resolution, methylation site lookup and annotation,
-disease associations, drug associations, and PubMed news subscriptions. Use
-`MODULECTOR_API_BASE_URL` or each tool's `base_url` argument to target a custom
-Modulector deployment.
-
-When deployed with the root Docker Compose stack, nginx proxies the MCP
-Streamable HTTP endpoint at `https://<mydomain.com>/mcp`.
-
-## Development
-
-Build this SDK from the `sdk/` directory:
-
-```bash
-uv build
-```
-
-The generated source distribution and wheel are written to `sdk/dist/`.
+Metadata-Version: 2.4
+Name: modulector-sdk
+Version: 2.6.1
+Summary: Typed Python SDK for the Modulector API.
+Author: omicsdatascience
+License-Expression: MIT
+Project-URL: API, https://modulector.multiomix.org/
+Project-URL: Homepage, https://modulector.multiomix.org/
+Project-URL: Issues, https://github.com/omics-datascience/modulector/issues
+Project-URL: Repository, https://github.com/omics-datascience/modulector
+Keywords: api-client,bioinformatics,methylation,mirna,sdk
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Topic :: Internet :: WWW/HTTP
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Typing :: Typed
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: mcp==1.27.2
+Requires-Dist: requests==2.31.0
+Dynamic: license-file
+
+# Modulector SDK
+
+Typed Python SDK for the Modulector API. The package contains client helpers for querying predicted and experimentally validated miRNA target interactions, miRNA aliases, methylation sites, disease associations, drug associations, and PubMed subscriptions without installing the Django backend dependencies.
+
+## Installation
+
+```bash
+pip install modulector-sdk
+```
+
+## Usage
+
+```python
+from modulector_sdk import (
+    get_mirna_details,
+    get_mirna_target_interactions,
+    get_mirna_target_validations,
+)
+
+details = get_mirna_details("hsa-miR-21-5p")
+interactions = get_mirna_target_interactions(
+    mirna="hsa-miR-21-5p",
+    gene="PTEN",
+    include_pubmeds=True,
+)
+validations = get_mirna_target_validations(
+    mirna="hsa-miR-122-5p",
+    target="SLC7A1",
+    experiment="Western blot",
+)
+```
+
+Set `MODULECTOR_API_BASE_URL` to target a different Modulector deployment:
+
+```bash
+MODULECTOR_API_BASE_URL=https://your-modulector.example.org python script.py
+```
+
+Every service function also accepts a `base_url` keyword argument for
+per-request overrides.
+
+## MCP server
+
+The SDK also installs a Model Context Protocol server that exposes the same
+service functions as LLM-callable tools.
+
+For local stdio MCP clients:
+
+```bash
+modulector-mcp
+```
+
+Example client configuration:
+
+```json
+{
+  "mcpServers": {
+    "modulector": {
+      "command": "modulector-mcp"
+    }
+  }
+}
+```
+
+For Streamable HTTP clients:
+
+```bash
+modulector-mcp --transport streamable-http --host 127.0.0.1 --port 8000
+```
+
+Then connect the client to `http://127.0.0.1:8000/mcp`.
+
+The server includes tools for predicted and experimentally validated miRNA target interactions, miRNA details and aliases, miRNA identifier resolution, methylation site lookup and annotation, disease associations, drug associations, and PubMed news subscriptions. Use `MODULECTOR_API_BASE_URL` or each tool's `base_url` argument to target a custom Modulector deployment.
+
+When deployed with the root Docker Compose stack, nginx proxies the MCP
+Streamable HTTP endpoint at `https://<mydomain.com>/mcp`.
+
+## Development
+
+Build this SDK from the `sdk/` directory:
+
+```bash
+uv build
+```
+
+The generated source distribution and wheel are written to `sdk/dist/`.

{modulector_sdk-2.5.2 → modulector_sdk-2.6.1}/README.md

@@ -1,84 +1,86 @@
-# Modulector SDK
-
-Typed Python SDK for the Modulector API. The package contains client helpers for
-querying miRNA target interactions, miRNA aliases, methylation sites, disease
-associations, drug associations, and PubMed subscriptions without installing the
-Django backend dependencies.
-
-## Installation
-
-```bash
-pip install modulector-sdk
-```
-
-## Usage
-
-```python
-from modulector_sdk import get_mirna_details, get_mirna_target_interactions
-
-details = get_mirna_details("hsa-miR-21-5p")
-interactions = get_mirna_target_interactions(
-    mirna="hsa-miR-21-5p",
-    gene="PTEN",
-    include_pubmeds=True,
-)
-```
-
-Set `MODULECTOR_API_BASE_URL` to target a different Modulector deployment:
-
-```bash
-MODULECTOR_API_BASE_URL=https://your-modulector.example.org python script.py
-```
-
-Every service function also accepts a `base_url` keyword argument for
-per-request overrides.
-
-## MCP server
-
-The SDK also installs a Model Context Protocol server that exposes the same
-service functions as LLM-callable tools.
-
-For local stdio MCP clients:
-
-```bash
-modulector-mcp
-```
-
-Example client configuration:
-
-```json
-{
-  "mcpServers": {
-    "modulector": {
-      "command": "modulector-mcp"
-    }
-  }
-}
-```
-
-For Streamable HTTP clients:
-
-```bash
-modulector-mcp --transport streamable-http --host 127.0.0.1 --port 8000
-```
-
-Then connect the client to `http://127.0.0.1:8000/mcp`.
-
-The server includes tools for miRNA target interactions, miRNA details and
-aliases, miRNA identifier resolution, methylation site lookup and annotation,
-disease associations, drug associations, and PubMed news subscriptions. Use
-`MODULECTOR_API_BASE_URL` or each tool's `base_url` argument to target a custom
-Modulector deployment.
-
-When deployed with the root Docker Compose stack, nginx proxies the MCP
-Streamable HTTP endpoint at `https://<mydomain.com>/mcp`.
-
-## Development
-
-Build this SDK from the `sdk/` directory:
-
-```bash
-uv build
-```
-
-The generated source distribution and wheel are written to `sdk/dist/`.
+# Modulector SDK
+
+Typed Python SDK for the Modulector API. The package contains client helpers for querying predicted and experimentally validated miRNA target interactions, miRNA aliases, methylation sites, disease associations, drug associations, and PubMed subscriptions without installing the Django backend dependencies.
+
+## Installation
+
+```bash
+pip install modulector-sdk
+```
+
+## Usage
+
+```python
+from modulector_sdk import (
+    get_mirna_details,
+    get_mirna_target_interactions,
+    get_mirna_target_validations,
+)
+
+details = get_mirna_details("hsa-miR-21-5p")
+interactions = get_mirna_target_interactions(
+    mirna="hsa-miR-21-5p",
+    gene="PTEN",
+    include_pubmeds=True,
+)
+validations = get_mirna_target_validations(
+    mirna="hsa-miR-122-5p",
+    target="SLC7A1",
+    experiment="Western blot",
+)
+```
+
+Set `MODULECTOR_API_BASE_URL` to target a different Modulector deployment:
+
+```bash
+MODULECTOR_API_BASE_URL=https://your-modulector.example.org python script.py
+```
+
+Every service function also accepts a `base_url` keyword argument for
+per-request overrides.
+
+## MCP server
+
+The SDK also installs a Model Context Protocol server that exposes the same
+service functions as LLM-callable tools.
+
+For local stdio MCP clients:
+
+```bash
+modulector-mcp
+```
+
+Example client configuration:
+
+```json
+{
+  "mcpServers": {
+    "modulector": {
+      "command": "modulector-mcp"
+    }
+  }
+}
+```
+
+For Streamable HTTP clients:
+
+```bash
+modulector-mcp --transport streamable-http --host 127.0.0.1 --port 8000
+```
+
+Then connect the client to `http://127.0.0.1:8000/mcp`.
+
+The server includes tools for predicted and experimentally validated miRNA target interactions, miRNA details and aliases, miRNA identifier resolution, methylation site lookup and annotation, disease associations, drug associations, and PubMed news subscriptions. Use `MODULECTOR_API_BASE_URL` or each tool's `base_url` argument to target a custom Modulector deployment.
+
+When deployed with the root Docker Compose stack, nginx proxies the MCP
+Streamable HTTP endpoint at `https://<mydomain.com>/mcp`.
+
+## Development
+
+Build this SDK from the `sdk/` directory:
+
+```bash
+uv build
+```
+
+The generated source distribution and wheel are written to `sdk/dist/`.

{modulector_sdk-2.5.2 → modulector_sdk-2.6.1}/pyproject.toml

@@ -1,56 +1,56 @@
-[build-system]
-requires = ["setuptools==80.9.0"]
-build-backend = "setuptools.build_meta"
-
-[project]
-name = "modulector-sdk"
-version = "2.5.2"
-description = "Typed Python SDK for the Modulector API."
-readme = "README.md"
-requires-python = ">=3.10"
-license = "MIT"
-license-files = ["LICENSE"]
-authors = [
-    { name = "omicsdatascience" },
-]
-keywords = [
-    "api-client",
-    "bioinformatics",
-    "methylation",
-    "mirna",
-    "sdk",
-]
-classifiers = [
-    "Development Status :: 4 - Beta",
-    "Intended Audience :: Developers",
-    "Intended Audience :: Science/Research",
-    "Operating System :: OS Independent",
-    "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
-    "Programming Language :: Python :: 3.12",
-    "Programming Language :: Python :: 3.13",
-    "Programming Language :: Python :: 3.14",
-    "Topic :: Internet :: WWW/HTTP",
-    "Topic :: Scientific/Engineering :: Bio-Informatics",
-    "Typing :: Typed",
-]
-dependencies = [
-    "mcp==1.27.2",
-    "requests==2.31.0",
-]
-
-[project.urls]
-API = "https://modulector.multiomix.org/"
-Homepage = "https://modulector.multiomix.org/"
-Issues = "https://github.com/omics-datascience/modulector/issues"
-Repository = "https://github.com/omics-datascience/modulector"
-
-[project.scripts]
-modulector-mcp = "modulector_sdk.mcp_server:main"
-
-[tool.setuptools.packages.find]
-where = ["src"]
-
-[tool.setuptools.package-data]
-modulector_sdk = ["py.typed"]
+[build-system]
+requires = ["setuptools==80.9.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "modulector-sdk"
+version = "2.6.1"
+description = "Typed Python SDK for the Modulector API."
+readme = "README.md"
+requires-python = ">=3.10"
+license = "MIT"
+license-files = ["LICENSE"]
+authors = [
+    { name = "omicsdatascience" },
+]
+keywords = [
+    "api-client",
+    "bioinformatics",
+    "methylation",
+    "mirna",
+    "sdk",
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Science/Research",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+    "Topic :: Internet :: WWW/HTTP",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+    "Typing :: Typed",
+]
+dependencies = [
+    "mcp==1.27.2",
+    "requests==2.31.0",
+]
+
+[project.urls]
+API = "https://modulector.multiomix.org/"
+Homepage = "https://modulector.multiomix.org/"
+Issues = "https://github.com/omics-datascience/modulector/issues"
+Repository = "https://github.com/omics-datascience/modulector"
+
+[project.scripts]
+modulector-mcp = "modulector_sdk.mcp_server:main"
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.setuptools.package-data]
+modulector_sdk = ["py.typed"]

{modulector_sdk-2.5.2 → modulector_sdk-2.6.1}/setup.cfg

@@ -1,4 +1,4 @@
-[egg_info]
-tag_build = 
-tag_date = 0
-
+[egg_info]
+tag_build = 
+tag_date = 0
+