module-qc-tools 2.5.0__tar.gz → 2.7.0__tar.gz

module_qc_tools-2.7.0/.gitattributes

@@ -0,0 +1,6 @@
+.zenodo.json                export-ignore
+.gitlab-ci.yml              export-ignore
+emulator                    export-ignore
+.linkcheckerrc              export-ignore
+.pre-commit-config.yaml     export-ignore
+tbump.toml                  export-ignore

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/.gitlab-ci.yml

@@ -127,6 +127,15 @@ package:
       - dist/
     expire_in: 1 day
 
+# the below should match the zenodo deploy
+check_zenodo:
+  stage: build
+  script:
+    - python3 -m pip install
+      git+https://gitlab.com/sbeniamine/gitlab2zenodo@1c794155e8dafd3a585f059e32bb4c0826cdf3a3
+    - git archive --format zip --output ${CI_COMMIT_REF_SLUG}.zip
+      ${CI_COMMIT_SHA}
+
 .deploy_package:
   stage: deploy
   dependencies:
@@ -162,7 +171,7 @@ deploy_docs_dev:
   script:
     # the next three lines are just to commit and push pages to the project
     - git config --global user.email
-      "project_139533_bot_52a0e9bbb1570326242e61cb6cd9d917@noreply.gitlab.cern.ch"
+      "project_139533_bot_86cd7491df432274ff6bb3decacac29d@noreply.gitlab.cern.ch"
     - git config --global user.name "pre-commit-ci"
     - git remote set-url origin
       "https://__pre-commit_ci_token:${PRE_COMMIT_CI_JOB_TOKEN}@${CI_SERVER_HOST}:${CI_SERVER_PORT}/${CI_PROJECT_PATH}.git"
@@ -187,3 +196,26 @@ deploy_docs_latest:
       "latest")
     - echo "Building and deploying docs for ${VERSION}"
     - pipx run hatch run docs:deploy "${VERSION}" ${IS_LATEST:+"$IS_LATEST"}
+
+.zenodo_base:
+  stage: deploy
+  before_script:
+    - python3 -m pip install
+      git+https://gitlab.com/sbeniamine/gitlab2zenodo@1c794155e8dafd3a585f059e32bb4c0826cdf3a3
+    - git archive --format zip --output ${CI_COMMIT_TAG#v}.zip ${CI_COMMIT_TAG}
+
+zenodo_release:
+  extends: .zenodo_base
+  rules:
+    - if: $CI_COMMIT_TAG =~ /^v?[0-9]+\.[0-9]+\.[0-9]+$/
+  script:
+    - g2z-send -p -i ${ZENODO_RECORD} -t ${ZENODO_TOKEN} -m .zenodo.json
+      ${CI_COMMIT_TAG#v}.zip
+
+zenodo_rc:
+  extends: .zenodo_base
+  rules:
+    - if: $CI_COMMIT_TAG =~ /^v?[0-9]+\.[0-9]+\.[0-9]+-rc[0-9]*$/
+  script:
+    - g2z-send -s -p -i ${ZENODO_RECORD_SANDBOX} -t ${ZENODO_TOKEN_SANDBOX} -m
+      .zenodo.json ${CI_COMMIT_TAG#v}.zip

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/.pre-commit-config.yaml

@@ -4,7 +4,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v6.0.0
     hooks:
       # broken in old git from 2013
       # - id: check-added-large-files
@@ -32,20 +32,20 @@ repos:
       - id: check-toml
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1 # keep at v4.0.1
+    rev: v6.0.0 # keep at v4.0.1
     hooks:
       - id: check-added-large-files
 
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: 1.16.0
+    rev: 1.20.0
     hooks:
       - id: blacken-docs
         additional_dependencies: [black==22.3.0]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.2.0
+    rev: v0.14.1
     hooks:
-      - id: ruff
+      - id: ruff-check
         args: ["--fix", "--show-fixes"]
       - id: ruff-format
 
@@ -57,7 +57,7 @@ repos:
       - id: rst-inline-touching-normal
 
   - repo: https://github.com/rbubley/mirrors-prettier
-    rev: "v3.3.2"
+    rev: "v3.6.2"
     hooks:
       - id: prettier
         types_or: [yaml, markdown, html, css, scss, javascript] #, json]
@@ -65,7 +65,7 @@ repos:
         language_version: 16.14.2
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.4.1
     hooks:
       - id: codespell
         files: ^.*\.(py|md|rst)$
@@ -84,7 +84,7 @@ repos:
         entry: "^permalink:.*_.*"
 
   - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: v0.9.0.6
+    rev: v0.11.0.1
     hooks:
       - id: shellcheck
 
@@ -96,7 +96,7 @@ repos:
   #      additional_dependencies: ["repo-review[cli]"]
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.19.1
+    rev: v3.21.0
     hooks:
       - id: pyupgrade
         args: ["--py38-plus"]

module_qc_tools-2.7.0/.zenodo.json

@@ -0,0 +1,127 @@
+{
+    "description": " general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests for the ATLAS ITk project",
+    "license": "MIT",
+    "title": "atlas-itk-pixel-modules/mqt: v2.7.0",
+    "version": "v2.7.0",
+    "upload_type": "software",
+    "creators": [
+    {
+        "name": "Elisabetta Pianori",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0001-9233-5892"
+    },
+    {
+        "name": "Timon Heim",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0002-7669-5318"
+    },
+    {
+        "name": "Lingxin Meng",
+        "affiliation": "Lancaster University",
+        "orcid": "0000-0002-2901-6589"
+    },
+    {
+        "name": "Marija Marjanovic",
+        "affiliation": "University of Oklahoma",
+        "orcid": "0000-0002-4468-0154"
+    },
+    {
+        "name": "Emily Thompson",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0001-7050-8203"
+    },
+    {
+        "name": "Giordon Stark",
+        "affiliation": "UC Santa Cruz",
+        "orcid": "0000-0001-6616-3433"
+    },
+    {
+        "name": "Jay Chan",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0001-7069-0295"
+    },
+    {
+        "name": "Deion Fellers",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0002-0731-9562"
+    },
+    {
+        "name": "Matthias Saimpert",
+        "affiliation": "IRFU, CEA, Université Paris-Saclay",
+        "orcid": "0000-0002-3765-1320"
+    },
+    {
+        "name": "Marianna Liberatore",
+        "affiliation": "IRFU, CEA, Université Paris-Saclay",
+        "orcid": "0000-0002-8444-8827"
+    },
+    {
+        "name": "Kehang Bai",
+        "affiliation": "University of Oregon",
+        "orcid": "0000-0001-8508-1169"
+    },
+    {
+        "name": "Haoran Zhao",
+        "affiliation": "University of Washington, Seattle",
+        "orcid": "0000-0002-6638-847X"
+    },
+    {
+        "name": "Angira Rastogi",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0000-0003-1245-6710"
+    },
+    {
+        "name": "Charles Huitquist",
+        "affiliation": "Lawrence Berkeley National Laboratory, Berkeley",
+        "orcid": "0009-0006-8213-621X"
+    },
+    {
+        "name": "Lubos Vozdecky",
+        "affiliation": "University of Oklahoma",
+        "orcid": "0000-0003-2541-4827"
+    },
+    {
+        "name": "Hideyuki Oide",
+        "affiliation": "KEK, Japan",
+        "orcid": "0000-0002-2173-3233"
+    },
+    {
+        "name": "Laura Pintucci",
+        "affiliation": "INFN Udine",
+        "orcid": "0000-0001-9842-9830"
+    },
+    {
+        "name": "Dima Maneuski",
+        "affiliation": "University of Glasgow",
+        "orcid": ""
+    },
+    {
+        "name": "Francesco Crescioli",
+        "affiliation": "LPNHE, Paris",
+        "orcid": "0000-0001-6457-2575"
+    },
+    {
+        "name": "Md Arif Abdulla Samy",
+        "affiliation": "University of Glasgow",
+        "orcid": ""
+    }
+],
+    "access_right": "open",
+    "keywords": [
+      "physics",
+      "electrical",
+      "silicon",
+      "pixel",
+      "modules",
+      "atlas",
+      "hep",
+      "itk"
+    ],
+    "related_identifiers": [
+        {
+            "scheme": "url",
+            "identifier": "https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/tree/v2.7.0",
+            "relation": "isSupplementTo"
+        }
+    ]
+}

module_qc_tools-2.7.0/CITATION.cff

@@ -0,0 +1,82 @@
+abstract: general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
+  for the ATLAS ITk project
+authors:
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Elisabetta Pianori
+  orcid: 0000-0001-9233-5892
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Timon Heim
+  orcid: 0000-0002-7669-5318
+- affiliation: Lancaster University
+  family-names: Lingxin Meng
+  orcid: 0000-0002-2901-6589
+- affiliation: University of Oklahoma
+  family-names: Marija Marjanovic
+  orcid: 0000-0002-4468-0154
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Emily Thompson
+  orcid: 0000-0001-7050-8203
+- affiliation: UC Santa Cruz
+  family-names: Giordon Stark
+  orcid: 0000-0001-6616-3433
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Jay Chan
+  orcid: 0000-0001-7069-0295
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Deion Fellers
+  orcid: 0000-0002-0731-9562
+- affiliation: "IRFU, CEA, Universit\xE9 Paris-Saclay"
+  family-names: Matthias Saimpert
+  orcid: 0000-0002-3765-1320
+- affiliation: "IRFU, CEA, Universit\xE9 Paris-Saclay"
+  family-names: Marianna Liberatore
+  orcid: 0000-0002-8444-8827
+- affiliation: University of Oregon
+  family-names: Kehang Bai
+  orcid: 0000-0001-8508-1169
+- affiliation: University of Washington, Seattle
+  family-names: Haoran Zhao
+  orcid: 0000-0002-6638-847X
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Angira Rastogi
+  orcid: 0000-0003-1245-6710
+- affiliation: Lawrence Berkeley National Laboratory, Berkeley
+  family-names: Charles Huitquist
+  orcid: 0009-0006-8213-621X
+- affiliation: University of Oklahoma
+  family-names: Lubos Vozdecky
+  orcid: 0000-0003-2541-4827
+- affiliation: KEK, Japan
+  family-names: Hideyuki Oide
+  orcid: 0000-0002-2173-3233
+- affiliation: INFN Udine
+  family-names: Laura Pintucci
+  orcid: 0000-0001-9842-9830
+- affiliation: University of Glasgow
+  family-names: Dima Maneuski
+- affiliation: LPNHE, Paris
+  family-names: Francesco Crescioli
+  orcid: 0000-0001-6457-2575
+- affiliation: University of Glasgow
+  family-names: Md Arif Abdulla Samy
+cff-version: 1.2.0
+date-released: '2025-06-03'
+doi: 10.5281/zenodo.15580233
+identifiers:
+- type: swh
+  value: swh:1:dir:7d6c84fd1350e351aa365098ebaba0d8eb6804cd;origin=https://doi.org/10.5281/zenodo.15580232;visit=swh:1:snp:5b7e07f226ec2353695cd4786ecd8459955899e8;anchor=swh:1:rel:9eee8a5bac77a8934b87ebe4cb5678216a846e66;path=/
+keywords:
+- physics
+- electrical
+- silicon
+- pixel
+- modules
+- atlas
+- hep
+- itk
+license:
+- mit
+message: If you use this software, please cite it using the metadata from this file.
+title: 'atlas-itk-pixel-modules/mqt: v2.7.0'
+type: software
+version: v2.7.0

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/PKG-INFO

@@ -1,11 +1,11 @@
 Metadata-Version: 2.4
 Name: module_qc_tools
-Version: 2.5.0
+Version: 2.7.0
 Summary: Module qc tools
 Project-URL: Homepage, https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools
 Project-URL: Bug Tracker, https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/issues
 Project-URL: Source, https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools
-Project-URL: Documentation, https://atlas-itk-pixel-mqt.docs.cern.ch/2.5/
+Project-URL: Documentation, https://atlas-itk-pixel-mqt.docs.cern.ch/2.7/
 Author-email: Jay Chan <jay.chan@cern.ch>
 Maintainer-email: Giordon Stark <gstark@cern.ch>
 License: Copyright (c) 2018 ATLAS ITk Pixel Modules
@@ -33,19 +33,19 @@ Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3.9
 Requires-Dist: check-jsonschema
-Requires-Dist: module-qc-data-tools>=1.2.0
-Requires-Dist: module-qc-database-tools>=2.6.0
+Requires-Dist: module-qc-data-tools>=1.4.0
+Requires-Dist: module-qc-database-tools>=2.9.0
 Requires-Dist: numpy
 Requires-Dist: packaging
 Requires-Dist: pre-commit
 Requires-Dist: requests
 Requires-Dist: rich
 Requires-Dist: tabulate
-Requires-Dist: typer>=0.9.0
+Requires-Dist: typer>=0.18.0
 Requires-Dist: urllib3<2,>=1.26.20; 'el7.x86_64' in platform_release
 Description-Content-Type: text/markdown
 
-# module-qc-tools v2.5.0
+# module-qc-tools v2.7.0
 
 A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 
@@ -63,7 +63,7 @@ A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 | | |
 | --- | --- |
 | CI/CD | [![CI - Test][cicd-badge]][cicd-link] |
-| Docs | [![Docs - Badge][docs-badge]][docs-link] |
+| Docs | [![Docs - Badge][docs-badge]][docs-link] [![Zenodo][zenodo-badge]][zenodo-link] |
 | Package | [![PyPI - Downloads - Total][pypi-downloads-total]][pypi-link] [![PyPI - Downloads - Per Month][pypi-downloads-dm]][pypi-link] [![PyPI - Version][pypi-version]][pypi-link] [![PyPI platforms][pypi-platforms]][pypi-link] |
 | Meta | [![GitLab - Issue][gitlab-issues-badge]][gitlab-issues-link] [![License - MIT][license-badge]][license-link] |
 
@@ -80,6 +80,8 @@ A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 [pypi-version]:             https://img.shields.io/pypi/v/module-qc-tools
 [license-badge]:            https://img.shields.io/badge/License-MIT-blue.svg
 [license-link]:             https://spdx.org/licenses/MIT.html
+[zenodo-badge]:             https://zenodo.org/badge/15442071.svg
+[zenodo-link]:              https://zenodo.org/badge/latestdoi/15442071
 
 <!-- prettier-ignore-end -->
 

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/README.md

@@ -1,4 +1,4 @@
-# module-qc-tools v2.5.0
+# module-qc-tools v2.7.0
 
 A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 
@@ -16,7 +16,7 @@ A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 | | |
 | --- | --- |
 | CI/CD | [![CI - Test][cicd-badge]][cicd-link] |
-| Docs | [![Docs - Badge][docs-badge]][docs-link] |
+| Docs | [![Docs - Badge][docs-badge]][docs-link] [![Zenodo][zenodo-badge]][zenodo-link] |
 | Package | [![PyPI - Downloads - Total][pypi-downloads-total]][pypi-link] [![PyPI - Downloads - Per Month][pypi-downloads-dm]][pypi-link] [![PyPI - Version][pypi-version]][pypi-link] [![PyPI platforms][pypi-platforms]][pypi-link] |
 | Meta | [![GitLab - Issue][gitlab-issues-badge]][gitlab-issues-link] [![License - MIT][license-badge]][license-link] |
 
@@ -33,6 +33,8 @@ A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 [pypi-version]:             https://img.shields.io/pypi/v/module-qc-tools
 [license-badge]:            https://img.shields.io/badge/License-MIT-blue.svg
 [license-link]:             https://spdx.org/licenses/MIT.html
+[zenodo-badge]:             https://zenodo.org/badge/15442071.svg
+[zenodo-link]:              https://zenodo.org/badge/latestdoi/15442071
 
 <!-- prettier-ignore-end -->
 

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/docs/history.md

@@ -16,6 +16,53 @@ and this project adheres to
 
 **_Fixed:_**
 
+## [2.7.0](https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/tags/v2.7.0) - 2025-10-29 ## {: #mqt-v2.7.0 }
+
+**_Changed:_**
+
+- move `load_hw_config`, `check_hw_config` functions and `hw_config` schema to
+  `mqdt`; add `localdb` section in `hw_config` (!263)
+
+**_Added:_**
+
+- Option `--npoints` for specifying number of SLDO measurement points
+  implemented (!260)
+  - A special mode is engaged for one-point SLDO measurement that does not
+    control the low voltage power supply.
+  - If `--npoints 1` is specified, the low-voltage power supply will not be
+    controlled, the user will be informed. -> feature for SLDO test on a loaded
+    local support
+  - The command to run this one-point SLDO measurement looks as follows:
+    `mqt measurement sldo -c <hw config> -o <output dir> --npoints <int>`
+  - a pipeline test `test_measurement_one_point_SLDO` was also added in
+    `test_emulator.py` to check the implementation
+  - add fcntl capability to lock before calling yarr commands simultaneously
+    (!265)
+
+**_Fixed:_**
+
+- fixed LP signal enabling for triplet modules, function `switchLPM` in `yarr`
+  is now layer dependent, for triplets the LP signal is enabled for all lanes,
+  while for quads it depends on module connectivity, as it was in previous
+  version (!268)
+
+## [2.6.0](https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/tags/v2.6.0) - 2025-06-16 ## {: #mqt-v2.6.0 }
+
+**_Changed:_**
+
+- LP mode test now can deal with core column modules using YARR v1.5.5 in LPM
+  digital scan (!244)
+
+  !!! important
+
+        Now `_warm` or `_cold` module config must be provided to run LP mode test instead of the `_LP` config.
+
+**_Added:_**
+
+- Zenodo files (!251)
+- check during `IV_MEASURE` that current is not all close to 0 (warm only)
+  (!257)
+
 ## [2.5.0](https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/tags/v2.5.0) - 2025-06-02 ## {: #mqt-v2.5.0 }
 
 **_Changed:_**
@@ -30,10 +77,11 @@ and this project adheres to
 - Dropped `emulator-XYZ` executables in favor of `mqt emulator` (!232)
 - Increased minimum supported python version to 3.8 (dropping 3.7) (!237)
 - IV emulator with more realistic values than previous fit (!238)
-- updated current for V2+V2BOM chips according to YTF recommendations (!242) !!!
-  important
+- updated current for V2+V2BOM chips according to YTF recommendations (!242)
+
+  !!! important
 
-        Requires module-qc-data-tools v1.1.4rc6
+        Requires module-qc-data-tools >= v1.1.4rc6
 
 **_Added:_**
 

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/docs/install.md

@@ -94,7 +94,7 @@ package.
 $ python -m venv venv
 $ source venv/bin/activate
 $ python -m pip install -U pip
-$ python -m pip install -U pip module-qc-tools==2.5.0
+$ python -m pip install -U pip module-qc-tools==2.7.0
 ```
 
 ### via uv
@@ -103,7 +103,7 @@ $ python -m pip install -U pip module-qc-tools==2.5.0
 $ python -m venv venv
 $ source venv/bin/activate
 $ python -m pip install uv
-$ uv pip install module-qc-tools==2.5.0
+$ uv pip install module-qc-tools==2.7.0
 ```
 
 # Usage

{module_qc_tools-2.5.0 → module_qc_tools-2.7.0}/docs/measurements.md

@@ -342,6 +342,11 @@ This script will run the low power mode test (`task = LP_MODE`) as specified in
 the input configuration json file (i.e. '$(module-qc-tools
 --prefix)/configs/meas_config.json').
 
+Due to the large number of modules with core column issues where bad core
+columns have to be disabled during testing, typically the warm config contains
+information of disabled core columns. Thus starting from v2.6.0 `_warm` or
+`_cold` config has to be supplied when running the LP mode test!
+
 **Configuration settings**
 
 | Name       | Description                                                                        |
@@ -354,7 +359,7 @@ the input configuration json file (i.e. '$(module-qc-tools
 ??? example
 
     ```
-    measurement-LP-MODE -c $(module-qc-tools --prefix)/configs/hw_config_example_merged_vmux.json -m ~/module_data/20UPGR91301046/20UPGR91301046_L2_LP.json
+    measurement-LP-MODE -c $(module-qc-tools --prefix)/configs/hw_config_example_merged_vmux.json -m ~/module_data/20UPGR91301046/20UPGR91301046_L2_warm.json
     ```
 
 ??? example "emulator"