module-qc-tools 2.2.7__tar.gz → 2.2.8__tar.gz

module_qc_tools-2.2.8/.gitlab-ci.yml

@@ -0,0 +1,189 @@
+stages:
+  - autoupdate
+  - check
+  - test
+  - build
+  - deploy
+
+variables:
+  # see https://docs.gitlab.com/ee/ci/caching/#cache-python-dependencies
+  PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
+  PRE_COMMIT_HOME: "$CI_PROJECT_DIR/.cache/pre-commit"
+
+cache:
+  paths:
+    - .cache/pip
+    - .cache/pre-commit
+    - venv/
+
+image: registry.cern.ch/docker.io/library/python:3.11-buster
+before_script:
+  # want to set up a virtualenv to cache
+  - apt-get install -y --no-install-recommends git
+  - python -V
+  - git config --global credential.helper 'cache'
+  - |
+    echo "protocol=https
+    host=gitlab.cern.ch
+    username=gitlab-ci-token
+    password=${CI_JOB_TOKEN}
+    " | git credential approve
+  - python -m venv venv
+  - source venv/bin/activate
+  - python -m pip install -U pip pipx
+  - python -m pipx ensurepath
+  - python -m pip freeze --local
+
+# NB: repo-review requires python>=3.10
+review:
+  image: registry.cern.ch/docker.io/library/python:3.10-buster
+  stage: check
+  script:
+    - pipx run 'sp-repo-review[cli]' .
+
+lint:
+  stage: check
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "push"
+  script:
+    - pipx run hatch run lint
+
+pre-commit:
+  stage: check
+  variables:
+    PRE_COMMIT_HOME: "$CI_PROJECT_DIR/.cache/pre-commit"
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "push"
+  script:
+    - pipx run pre-commit run --hook-stage manual --all-files
+  cache:
+    key:
+      files:
+        - .pre-commit-config.yaml
+    paths:
+      - .cache/pre-commit
+
+pre-commit-autoupdate:
+  stage: autoupdate
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "schedule"
+      when: always
+    - if:
+        $CI_PIPELINE_SOURCE == "push" && $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+      when: manual
+      # manual jobs need allow_failure? https://gitlab.com/gitlab-org/gitlab/-/issues/233876
+      allow_failure: true
+  script:
+    - python -m pip install pre-commit
+    - python -m pip freeze --local
+    - ci/pre-commit-update.sh
+
+  cache:
+    key:
+      files:
+        - .pre-commit-config.yaml
+    paths:
+      - .cache/pre-commit
+
+tests:
+  stage: test
+  image: $IMAGE
+  script:
+    - git clone
+      https://gitlab-ci-token:${CI_JOB_TOKEN}@gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools
+    - pipx run hatch run +py=${PYTHON_VERSION} dev:test
+  parallel:
+    matrix:
+      - IMAGE: "registry.cern.ch/docker.io/library/python:3.8-buster"
+        PYTHON_VERSION: "3.8"
+      - IMAGE: "registry.cern.ch/docker.io/library/python:3.9-buster"
+        PYTHON_VERSION: "3.9"
+      - IMAGE: "registry.cern.ch/docker.io/library/python:3.10-buster"
+        PYTHON_VERSION: "3.10"
+      - IMAGE: "registry.cern.ch/docker.io/library/python:3.11-buster"
+        PYTHON_VERSION: "3.11"
+      - IMAGE: "registry.cern.ch/docker.io/library/python:3.12-bullseye"
+        PYTHON_VERSION: "3.12"
+
+.test:
+  image: registry.cern.ch/docker.io/library/python:3.8-buster
+  stage: test
+
+make-docs:
+  stage: test
+  image: registry.cern.ch/docker.io/library/python:3.11-bullseye
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "push"
+  script: pipx run hatch run docs:build-check
+
+package:
+  stage: build
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "push"
+  script:
+    - pipx run hatch run build-check
+  artifacts:
+    paths:
+      - dist/
+    expire_in: 1 day
+
+.deploy_package:
+  stage: deploy
+  dependencies:
+    - package
+  script:
+    - pipx run hatch run upload
+
+deploy_package_gitlab:
+  extends: .deploy_package
+  rules:
+    - if:
+        $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH && $CI_PIPELINE_SOURCE == "push"
+  variables:
+    TWINE_REPOSITORY_URL: "https://gitlab.cern.ch/api/v4/projects/${CI_PROJECT_ID}/packages/pypi"
+    TWINE_USERNAME: "gitlab-ci-token"
+    TWINE_PASSWORD: "${CI_JOB_TOKEN}"
+
+deploy_package_pypi:
+  extends: .deploy_package
+  only:
+    - tags
+  variables:
+    TWINE_REPOSITORY: pypi
+    TWINE_USERNAME: __token__
+    TWINE_PASSWORD: $PYPI_TOKEN
+
+deploy_docs_dev:
+  stage: deploy
+  resource_group: documentation
+  rules:
+    - if:
+        $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH && $CI_PIPELINE_SOURCE == "push"
+  script:
+    # the next three lines are just to commit and push pages to the project
+    - git config --global user.email
+      "project_139533_bot_52a0e9bbb1570326242e61cb6cd9d917@noreply.gitlab.cern.ch"
+    - git config --global user.name "pre-commit-ci"
+    - git remote set-url origin
+      "https://__pre-commit_ci_token:${PRE_COMMIT_CI_JOB_TOKEN}@${CI_SERVER_HOST}:${CI_SERVER_PORT}/${CI_PROJECT_PATH}.git"
+    # this is the script
+    - pipx run hatch run docs:deploy dev
+
+deploy_docs_latest:
+  stage: deploy
+  resource_group: documentation
+  only:
+    - tags
+  script:
+    # the next three lines are just to commit and push pages to the project
+    - git config --global user.email
+      "project_139533_bot_52a0e9bbb1570326242e61cb6cd9d917@noreply.gitlab.cern.ch"
+    - git config --global user.name "pre-commit-ci"
+    - git remote set-url origin
+      "https://__pre-commit_ci_token:${PRE_COMMIT_CI_JOB_TOKEN}@${CI_SERVER_HOST}:${CI_SERVER_PORT}/${CI_PROJECT_PATH}.git"
+    # this is the script
+    - VERSION=$(cut -d '.' -f 1,2 <<< "${CI_COMMIT_TAG}")
+    - IS_LATEST=$([[ "${CI_COMMIT_TAG}" == *"rc"* ]] && echo "" || echo
+      "latest")
+    - echo "Building and deploying docs for ${VERSION}"
+    - pipx run hatch run docs:deploy "${VERSION}" ${IS_LATEST:+"$IS_LATEST"}

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: module_qc_tools
-Version: 2.2.7
+Version: 2.2.8
 Summary: Module qc tools
 Project-URL: Homepage, https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools
 Project-URL: Bug Tracker, https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-tools/-/issues
@@ -34,7 +34,7 @@ Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3.7
 Requires-Dist: check-jsonschema
 Requires-Dist: importlib-resources; python_version < '3.9'
-Requires-Dist: module-qc-data-tools>=1.0.14
+Requires-Dist: module-qc-data-tools>=1.0.22
 Requires-Dist: numpy
 Requires-Dist: pre-commit
 Requires-Dist: requests
@@ -44,7 +44,7 @@ Requires-Dist: typer>=0.9.0
 Requires-Dist: urllib3<2,>=1.26.11; 'el7.x86_64' in platform_release
 Description-Content-Type: text/markdown
 
-# module-qc-tools v2.2.7
+# module-qc-tools v2.2.8
 
 A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/README.md

@@ -1,4 +1,4 @@
-# module-qc-tools v2.2.7
+# module-qc-tools v2.2.8
 
 A general python tool for running ITkPixV1.1 and ITkPixV2 module QC tests
 

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/docs/install.md

@@ -92,7 +92,7 @@ package.
 $ python -m venv venv
 $ source venv/bin/activate
 $ python -m pip install -U pip
-$ python -m pip install -U pip module-qc-tools==2.2.7
+$ python -m pip install -U pip module-qc-tools==2.2.8
 ```
 
 ### via uv
@@ -101,7 +101,7 @@ $ python -m pip install -U pip module-qc-tools==2.2.7
 $ python -m venv venv
 $ source venv/bin/activate
 $ python -m pip install uv
-$ uv pip install module-qc-tools==2.2.7
+$ uv pip install module-qc-tools==2.2.8
 ```
 
 # Usage

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/pyproject.toml

@@ -20,7 +20,7 @@ dependencies = [
     "tabulate",
     "pre-commit",
     "check-jsonschema",
-    "module-qc-data-tools >= 1.0.14",
+    "module-qc-data-tools >= 1.0.22",
     'importlib_resources; python_version < "3.9"',
     "requests",
     'urllib3>=1.26.11,<2; "el7.x86_64" in platform_release',
@@ -110,7 +110,7 @@ dependencies = [
 test = "pytest -ra {args}"
 
 [[tool.hatch.envs.dev.matrix]]
-python = ["3.7", "3.8", "3.9", "3.10", "3.11", "pypy3.8"]
+python = ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12", "pypy3.8"]
 
 [tool.hatch.envs.docs]
 template = "docs"

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '2.2.7'
-__version_tuple__ = version_tuple = (2, 2, 7)
+__version__ = version = '2.2.8'
+__version_tuple__ = version_tuple = (2, 2, 8)

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/ADC_CALIBRATION.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.adc_calibration import run
 from module_qc_tools.utils.misc import (
     add_identifiers_metadata,
@@ -85,7 +86,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     ps.set(v=config["v_max"], i=config["i_config"][layer])
 
@@ -101,15 +102,12 @@ def main(
 
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/ANALOG_READBACK.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.analog_readback import (
     run_tmeas,
     run_vdda_vddd_vs_trim,
@@ -86,7 +87,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     ps.set(v=config["v_max"], i=config["i_config"][layer])
     yr.configure()
@@ -138,16 +139,12 @@ def main(
     add_identifiers_metadata(data_tempmeas, module_serial, institution)
 
     # save results in json
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
-        logger.info(f"Chip-{chip+1}")
-        logger.info(data[chip], extra={"markup": False})
-        logger.info(data_tempmeas[chip], extra={"markup": False})
+        console.print(data[chip])
+        console.print(data_tempmeas[chip])
         chip_name = data[chip]._meta_data["Name"]
 
         for dataobj in [data, data_tempmeas, data_vdda_vddd_vs_trim]:

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/DATA_TRANSMISSION.py

@@ -18,6 +18,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.data_transmission import run
 from module_qc_tools.utils.misc import (
     add_identifiers_metadata,
@@ -52,7 +53,7 @@ def main(
 
     if use_calib_adc:
         logger.warning(
-            "The --use-calib-adc was supplied but Data Transmission cannot be performed with this option. Will ignore."
+            "The --use-calib-adc was supplied but Data Transmission does not use the multimeter, nor the ADC calibration. The flag will be ignored."
         )
 
     # if -o option used, overwrite the default output directory
@@ -86,7 +87,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     ps.set(v=config["v_max"], i=config["i_config"][layer])
 
@@ -109,15 +110,12 @@ def main(
 
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/INJECTION_CAPACITANCE.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.injection_capacitance import (
     run,
 )
@@ -53,11 +54,6 @@ def main(
 
     timestart = datetime.now().strftime("%Y-%m-%d_%H%M%S")
 
-    if use_calib_adc:
-        logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
-        )
-
     # if -o option used, overwrite the default output directory
     output_dir = module_connectivity.parent if module_connectivity else base_output_dir
 
@@ -87,7 +83,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     ps.set(v=config["v_max"], i=config["i_config"][layer])
 
@@ -102,15 +98,12 @@ def main(
         raise typer.Exit(1) from err
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/IV_MEASURE.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.iv_measure import run
 from module_qc_tools.utils.misc import (
     add_identifiers_metadata,
@@ -48,7 +49,7 @@ def main(
 
     if use_calib_adc:
         logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
+            "The --use-calib-adc was supplied but IV Measure does not use the multimeter, nor the ADC calibration. The flag will be ignored."
         )
 
     # if -o option used, overwrite the default output directory
@@ -98,12 +99,9 @@ def main(
     add_identifiers_metadata(data, module_serial, institution)
     data.add_meta_data("DepletionVoltage", vdepl)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
 
-    logger.info("data: %s", data, extra={"markup": False})
+    console.print(data)
     outputDF = outputDataFrame()
     outputDF._serialNumber = module_serial
     outputDF.set_test_type(TEST_TYPE)

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/LONG_TERM_STABILITY_DCS.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.long_term_stability_dcs import run
 from module_qc_tools.utils.misc import (
     add_identifiers_metadata,
@@ -120,12 +121,9 @@ def main(
 
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
 
-    logger.info("data: %s", data, extra={"markup": False})
+    console.print(data)
     outputDF = outputDataFrame()
     outputDF._serialNumber = module_serial
     outputDF.set_test_type(TEST_TYPE)

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/LP_MODE.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.lp_mode import (
     run,
 )
@@ -55,11 +56,6 @@ def main(
 
     timestart = datetime.now().strftime("%Y-%m-%d_%H%M%S")
 
-    if use_calib_adc:
-        logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
-        )
-
     # if -o option used, overwrite the default output directory
     output_dir = module_connectivity.parent if module_connectivity else base_output_dir
 
@@ -89,7 +85,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     try:
         data = run(config, ps, yr, layer, use_calib_adc)
@@ -104,15 +100,12 @@ def main(
         raise typer.Exit(1) from err
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/OVERVOLTAGE_PROTECTION.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.overvoltage_protection import (
     run,
 )
@@ -50,11 +51,6 @@ def main(
 ):
     timestart = datetime.now().strftime("%Y-%m-%d_%H%M%S")
 
-    if use_calib_adc:
-        logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
-        )
-
     # if -o option used, overwrite the default output directory
     output_dir = module_connectivity.parent if module_connectivity else base_output_dir
 
@@ -84,7 +80,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     try:
         data = run(config, ps, yr, layer, use_calib_adc)
@@ -99,15 +95,12 @@ def main(
         raise typer.Exit(1) from err
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/SLDO.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.sldo import (
     run,
 )
@@ -50,11 +51,6 @@ def main(
 ):
     timestart = datetime.now().strftime("%Y-%m-%d_%H%M%S")
 
-    if use_calib_adc:
-        logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
-        )
-
     # if -o option used, overwrite the default output directory
     output_dir = module_connectivity.parent if module_connectivity else base_output_dir
 
@@ -84,7 +80,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     try:
         data = run(config, ps, yr, layer, use_calib_adc)
@@ -97,15 +93,12 @@ def main(
         raise typer.Exit(1) from err
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])

{module_qc_tools-2.2.7 → module_qc_tools-2.2.8}/src/module_qc_tools/cli/UNDERSHUNT_PROTECTION.py

@@ -17,6 +17,7 @@ from module_qc_tools.cli.globals import (
     OPTIONS,
     LogLevel,
 )
+from module_qc_tools.console import console
 from module_qc_tools.measurements.undershunt_protection import (
     run,
 )
@@ -52,11 +53,6 @@ def main(
 ):
     timestart = datetime.now().strftime("%Y-%m-%d_%H%M%S")
 
-    if use_calib_adc:
-        logger.warning(
-            "The --use-calib-adc was supplied but ADC calibration cannot be performed with this option. Will ignore and use multimeter."
-        )
-
     # if -o option used, overwrite the default output directory
     output_dir = module_connectivity.parent if module_connectivity else base_output_dir
 
@@ -86,7 +82,7 @@ def main(
     yr = yarr(config["yarr"])
 
     if not use_pixel_config:
-        yr.omit_pixel_config("tmp")
+        yr.omit_pixel_config()
 
     try:
         data = run(config, ps, yr, layer, use_calib_adc)
@@ -101,15 +97,12 @@ def main(
         raise typer.Exit(1) from err
     add_identifiers_metadata(data, module_serial, institution)
 
-    logger.info(
-        "==================================Summary=================================="
-    )
     alloutput = []
     chipnames = []
 
     for chip in yr._enabled_chip_positions:
         chip_name = data[chip]._meta_data["Name"]
-        logger.info(r"data\[chip]: %s", data[chip], extra={"markup": False})
+        console.print(data[chip])
         outputDF = outputDataFrame()
         outputDF.set_test_type(TEST_TYPE)
         outputDF.set_results(data[chip])