moducomp 0.7.4__tar.gz → 0.7.6__tar.gz

{moducomp-0.7.4 → moducomp-0.7.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: moducomp
-Version: 0.7.4
+Version: 0.7.6
 Summary: moducomp: metabolic module completeness and complementarity for microbiomes.
 Keywords: bioinformatics,microbiome,metabolic,kegg,genomics
 Author-email: "Juan C. Villada" <jvillada@lbl.gov>
@@ -74,7 +74,7 @@ If `EGGNOG_DATA_DIR` is not set, `moducomp download-eggnog-data` defaults to `${
 Small test data sets ship with `moducomp`. After installation you can confirm the pipeline by running:
 
 ```bash
-moducomp test --ncpus 16 --eggnog-data-dir "$EGGNOG_DATA_DIR"
+moducomp test --ncpus 16 --calculate-complementarity 2 --eggnog-data-dir "$EGGNOG_DATA_DIR"
 ```
 
 ### Developer install (Pixi)

{moducomp-0.7.4 → moducomp-0.7.6}/README.md

@@ -49,7 +49,7 @@ If `EGGNOG_DATA_DIR` is not set, `moducomp download-eggnog-data` defaults to `${
 Small test data sets ship with `moducomp`. After installation you can confirm the pipeline by running:
 
 ```bash
-moducomp test --ncpus 16 --eggnog-data-dir "$EGGNOG_DATA_DIR"
+moducomp test --ncpus 16 --calculate-complementarity 2 --eggnog-data-dir "$EGGNOG_DATA_DIR"
 ```
 
 ### Developer install (Pixi)

{moducomp-0.7.4 → moducomp-0.7.6}/moducomp/__init__.py

@@ -2,7 +2,7 @@
 moducomp: metabolic module completeness and complementarity for microbiomes.
 """
 
-__version__ = "0.7.4"
+__version__ = "0.7.6"
 __author__ = "Juan C. Villada"
 __email__ = "jvillada@lbl.gov"
 __title__ = "moducomp"

{moducomp-0.7.4 → moducomp-0.7.6}/moducomp/moducomp.py

@@ -3285,7 +3285,7 @@ def test(
         help="Number of CPU cores to use for the test run.",
     ),
     calculate_complementarity: int = typer.Option(
-        0,
+        2,
         "--calculate-complementarity",
         "-c",
         help="Complementarity size to compute during the test (0 disables).",

{moducomp-0.7.4 → moducomp-0.7.6}/pyproject.toml

@@ -53,7 +53,7 @@ kegg-pathways-completeness = "*"
 
 [tool.pixi.tasks]
 moducomp = "python -m moducomp --help"
-test = "python -m moducomp test --ncpus 2"
+test = "python -m moducomp test --ncpus 2 --calculate-complementarity 2"
 download-eggnog-data = "python -m moducomp download-eggnog-data"
 pipeline = "python -m moducomp pipeline --help"
 analyze_ko_matrix = "python -m moducomp analyze-ko-matrix --help"

{moducomp-0.7.4 → moducomp-0.7.6}/recipe.yaml

@@ -1,5 +1,5 @@
 context:
-  version: 0.7.4
+  version: 0.7.6
 
 package:
   name: moducomp
@@ -7,7 +7,7 @@ package:
 
 source:
 - url: https://pypi.org/packages/source/m/moducomp/moducomp-${{ version }}.tar.gz
-  sha256: b6d5648b660aadc9ecdb9375d35a984a02ef23d99d9d8085067a18d72037aabf
+  sha256: 156432ad4a066a77db29bac0faff4e06c56ff4966d5e7f4a7acbf83be528ca70
 
 build:
   script: