mmg-sc 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mmg_sc-0.1.0/PKG-INFO +41 -0
- mmg_sc-0.1.0/README.md +11 -0
- mmg_sc-0.1.0/example/cross_species_integration.ipynb +362 -0
- mmg_sc-0.1.0/example/cross_species_transfer.ipynb +208 -0
- mmg_sc-0.1.0/pyproject.toml +50 -0
- mmg_sc-0.1.0/requirements.txt +10 -0
- mmg_sc-0.1.0/src/mmg_sc/__init__.py +17 -0
- mmg_sc-0.1.0/src/mmg_sc/integration.py +430 -0
- mmg_sc-0.1.0/src/mmg_sc/mapping.py +113 -0
- mmg_sc-0.1.0/src/mmg_sc/model.py +250 -0
- mmg_sc-0.1.0/src/mmg_sc/preprocess.py +136 -0
- mmg_sc-0.1.0/test_data/mouse_human_brain_samp.h5ad +0 -0
mmg_sc-0.1.0/PKG-INFO
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Metadata-Version: 2.4
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Name: mmg-sc
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Version: 0.1.0
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Summary: Meta Marker Generator (MMG) for multimodal and cross-species single-cell data integration
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Project-URL: Homepage, https://github.com/sunyk740/MMG
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Project-URL: Bug Reports, https://github.com/sunyk740/MMG/issues
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Project-URL: Repository, https://github.com/sunyk740/MMG.git
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Author-email: Yongkang Sun <sunyk2023@ion.ac.cn>
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License: MIT
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Requires-Python: <3.12,>=3.8
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Requires-Dist: matplotlib==3.7.5
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Requires-Dist: numpy==1.22.4
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Requires-Dist: pandas==2.0.3
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Requires-Dist: pot==0.9.4
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Requires-Dist: scanpy==1.9.3
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Requires-Dist: scikit-learn==1.3.2
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Requires-Dist: scipy==1.10.1
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Requires-Dist: seaborn==0.13.2
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Requires-Dist: torch==2.0.1
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Description-Content-Type: text/markdown
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# MMG
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**MMG (Meta Marker Generator)** is an interpretable linear framework for cross-modal and cross-species single-cell data integration.
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## 📖 Overview
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MMG learns concise, linearly weighted gene combinations called **"meta-markers"** through a denoising autoencoder with adversarial domain adaptation. Unlike black-box deep learning approaches, MMG produces interpretable gene weight vectors that capture essential cellular identity information while remaining robust to technical artifacts.
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## 📦 Installation
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```bash
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pip install mmg-sc
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mmg_sc-0.1.0/README.md
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# MMG
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**MMG (Meta Marker Generator)** is an interpretable linear framework for cross-modal and cross-species single-cell data integration.
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## 📖 Overview
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MMG learns concise, linearly weighted gene combinations called **"meta-markers"** through a denoising autoencoder with adversarial domain adaptation. Unlike black-box deep learning approaches, MMG produces interpretable gene weight vectors that capture essential cellular identity information while remaining robust to technical artifacts.
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## 📦 Installation
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```bash
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pip install mmg-sc
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