mlbi-bitool 0.2.1__tar.gz → 0.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/PKG-INFO +1 -1
  2. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/pyproject.toml +1 -1
  3. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/load_datasets.py +20 -28
  4. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/PKG-INFO +1 -1
  5. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/LICENSE +0 -0
  6. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/MANIFEST.in +0 -0
  7. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/README.md +0 -0
  8. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/setup.cfg +0 -0
  9. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/setup.py +0 -0
  10. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/__init__.py +0 -0
  11. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/align.py +0 -0
  12. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/bistack.py +0 -0
  13. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/bitools.py +0 -0
  14. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/cnv.py +0 -0
  15. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/decomp.py +0 -0
  16. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/deg.py +0 -0
  17. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/deiso.py +0 -0
  18. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/gatk.py +0 -0
  19. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/geq.py +0 -0
  20. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/mlbi_util.py +0 -0
  21. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/pybam.py +0 -0
  22. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/tasm.py +0 -0
  23. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/util.py +0 -0
  24. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/SOURCES.txt +0 -0
  25. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/dependency_links.txt +0 -0
  26. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/requires.txt +0 -0
  27. {mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/top_level.txt +0 -0
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mlbi-bitool
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- Version: 0.2.1
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+ Version: 0.2.2
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  Summary: Python interface to BioInfo tools for use in Google.Colab
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  Author-email: MLBI Lab <syoon@dku.edu>
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  License-Expression: MIT
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/pyproject.toml RENAMED
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "mlbi-bitool"
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- version = "0.2.1"
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+ version = "0.2.2"
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  description = "Python interface to BioInfo tools for use in Google.Colab"
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  readme = "README.md"
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  authors = [{ name = "MLBI Lab", email = "syoon@dku.edu" }]
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool/load_datasets.py RENAMED
@@ -385,34 +385,26 @@ def decompress_tar_gz_folder(file_in, remove_org=True):
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  bi_sample_data_fid_dict = {
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- 'BI_RefGenome_hg38_sel': '1uIHwlS3N4TsN7sJdD3j5Hf8B_clTQXHl',
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- 'BI_Files_for_GATK': '1pbMIMvoqBqGE9yMKUg2E-f2m4P8mmN4Y',
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- 'BI_Files_for_GATK_full': '13qwSu1e7d7olhKmpEuZYLSNShNCXfLkH',
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- 'BI_WES_PDAC_chr17': '1l88p48edaw7oHTSdCFQgXALoUAdYr2nT',
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- 'BI_WES_PDAC_chr17_bam': '1xCiTuVPqLytx5NTxmaIQcLXoUGPP-XZ7',
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- 'BI_RNAseq_pacbio_chr12': '13X-UBFJYlwgJXS-m5Bz5tqoe97TZFqZD',
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- 'BI_RNAseq_pacbio_chr12_bam': '1yDmQDjkkoHh9WP28PRp_vOr1r9YJMPmp',
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- 'RefGenome_hg38_sel': '1uIHwlS3N4TsN7sJdD3j5Hf8B_clTQXHl',
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- 'Files_for_GATK_chr12': '1pbMIMvoqBqGE9yMKUg2E-f2m4P8mmN4Y',
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- 'Files_for_GATK': '13qwSu1e7d7olhKmpEuZYLSNShNCXfLkH',
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- 'WES_PDAC_chr12': '1l88p48edaw7oHTSdCFQgXALoUAdYr2nT',
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- 'WES_PDAC_chr12_bam': '1xCiTuVPqLytx5NTxmaIQcLXoUGPP-XZ7',
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- 'WES_PDAC_chr12_SNV_CNV_results': '1V1tQQaMinXQvnjYT5y8FkqjDLksRY7-X',
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- 'WES_NSCLC_chr7': '1OIWarGf6Q9SN9sUjtvH1jqjm4apj5q28',
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- 'WES_NSCLC_chr7_bam': '1uSJ0l9bKhX3E90WLRs9QRwyHo1Ljtsmp',
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- 'RNAseq_PDAC_chr12': '1RAVk6NxIyl-lyrwh0qoNu0Vm4R2V5ht9',
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- 'RNAseq_PDAC_chr12_bam': '1g0kBnw0s-6AuGieuW-O1-4pSsftk0sn9',
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- 'RNAseq_NSCLC_chr7': '1HF9N5USGkhxpjzsLmChAqtiIP4OuwelM',
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- 'RNAseq_NSCLC_chr7_bam': '1Ek2gTTGPPcaXqVee4XThcx7BgDgv9_5w',
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- 'RNAseq_CRC_chr17': '1KbV3o6r4pVPtlQur0xyiniJYS01DsPpM',
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- 'RNAseq_CRC_chr17_bam': '13FOOKwlMFgKJCg5-5x5gft0--zzHWAUc',
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- 'RNAseq_CRC_chr17_gexp_results': '1kJLU5AGuX4XmC1AbhX1kkn6F3A3jWtYD',
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- 'RNAseq_pacbio_chr7': '1vIpKKmwpKz4XyRhCsUQ_CMQZrVOPNigZ',
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- # 'RNAseq_pacbio_chr7_bam': '',
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- 'index_bwa_hg38_sel': '1Ed9aMgOCmoFKYKj6-3WbEmQqepzRKUqJ',
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- 'index_star_hg38_sel': '1VnU8oqEUPMViNX0QybywbW2jPY0Z1u4a',
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- 'index_rsem_hg38_sel': '1Sy3DFcacd3sM3Fqi1egJhVfG4ZTWqD9i',
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- 'index_salmon_hg38_sel': '1Q9yhzWuMdgHcNVUdNQGBjvTG307tzoD9',
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+ 'BI_RefGenome_hg38_sel': '1uIHwlS3N4TsN7sJdD3j5Hf8B_clTQXHl',
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+ 'BI_Files_for_GATK_chr12': '1pbMIMvoqBqGE9yMKUg2E-f2m4P8mmN4Y',
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+ 'BI_Files_for_GATK': '13qwSu1e7d7olhKmpEuZYLSNShNCXfLkH',
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+ 'BI_WES_PDAC_chr12': '1l88p48edaw7oHTSdCFQgXALoUAdYr2nT',
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+ 'BI_WES_PDAC_chr12_bam': '1xCiTuVPqLytx5NTxmaIQcLXoUGPP-XZ7',
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+ 'BI_WES_PDAC_chr12_SNV_CNV_results': '1V1tQQaMinXQvnjYT5y8FkqjDLksRY7-X',
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+ 'BI_WES_NSCLC_chr7': '1OIWarGf6Q9SN9sUjtvH1jqjm4apj5q28',
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+ 'BI_WES_NSCLC_chr7_bam': '1uSJ0l9bKhX3E90WLRs9QRwyHo1Ljtsmp',
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+ 'BI_RNAseq_PDAC_chr12': '1RAVk6NxIyl-lyrwh0qoNu0Vm4R2V5ht9',
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+ 'BI_RNAseq_PDAC_chr12_bam': '1g0kBnw0s-6AuGieuW-O1-4pSsftk0sn9',
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+ 'BI_RNAseq_NSCLC_chr7': '1HF9N5USGkhxpjzsLmChAqtiIP4OuwelM',
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+ 'BI_RNAseq_NSCLC_chr7_bam': '1Ek2gTTGPPcaXqVee4XThcx7BgDgv9_5w',
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+ 'BI_RNAseq_CRC_chr17': '1KbV3o6r4pVPtlQur0xyiniJYS01DsPpM',
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+ 'BI_RNAseq_CRC_chr17_bam': '13FOOKwlMFgKJCg5-5x5gft0--zzHWAUc',
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+ 'BI_RNAseq_CRC_chr17_gexp_results': '1kJLU5AGuX4XmC1AbhX1kkn6F3A3jWtYD',
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+ 'BI_RNAseq_pacbio_chr7': '1vIpKKmwpKz4XyRhCsUQ_CMQZrVOPNigZ',
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+ 'BI_index_bwa_hg38_sel': '1Ed9aMgOCmoFKYKj6-3WbEmQqepzRKUqJ',
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+ 'BI_index_star_hg38_sel': '1VnU8oqEUPMViNX0QybywbW2jPY0Z1u4a',
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+ 'BI_index_rsem_hg38_sel': '1Sy3DFcacd3sM3Fqi1egJhVfG4ZTWqD9i',
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+ 'BI_index_salmon_hg38_sel': '1Q9yhzWuMdgHcNVUdNQGBjvTG307tzoD9',
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  'ML_TCGA_BRCA': '1YHJwzdDwQx0KDhmn2fndB9j5leBBx8hH',
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  'ML_METABRIC': '1b3cPWwz_CG86s4TGnfCjxCP7KVh2UPHR',
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  'ML_CCLE_CTRPv2': '1q2XqSycVSrgFPJ4FUI2qWHxIKqYYTdij',
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/src/mlbi_bitool.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mlbi-bitool
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- Version: 0.2.1
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+ Version: 0.2.2
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  Summary: Python interface to BioInfo tools for use in Google.Colab
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  Author-email: MLBI Lab <syoon@dku.edu>
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  License-Expression: MIT
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/LICENSE RENAMED
File without changes
{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/MANIFEST.in RENAMED
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{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/README.md RENAMED
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{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/setup.cfg RENAMED
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{mlbi_bitool-0.2.1 → mlbi_bitool-0.2.2}/setup.py RENAMED
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