mlatom 2.2__tar.gz → 2.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (110) hide show
  1. {MLatom-2.2 → MLatom-2.3}/PKG-INFO +3 -6
  2. {MLatom-2.2 → MLatom-2.3}/README.md +2 -2
  3. {MLatom-2.2 → MLatom-2.3}/setup.py +2 -2
  4. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatom.py +2 -2
  5. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/A_KRR.f90 +461 -95
  6. MLatom-2.3/src/MLatom/MLatomF_src/A_KRR_kernel.f90 +2076 -0
  7. MLatom-2.3/src/MLatom/MLatomF_src/D_ID.f90 +41 -0
  8. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/D_rel2eq.f90 +64 -21
  9. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/MLatomF.f90 +3 -3
  10. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/MLmodel.f90 +289 -50
  11. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/Makefile +10 -9
  12. MLatom-2.3/src/MLatom/MLatomF_src/Makefile.intel +11 -0
  13. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/dataset.f90 +121 -137
  14. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/mathUtils.f90 +21 -10
  15. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/molDescr.f90 +93 -15
  16. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/optionsModule.f90 +142 -47
  17. MLatom-2.3/src/MLatom/MLatomF_src/recover.sh +33 -0
  18. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/sampling.f90 +9 -2
  19. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/statistics.f90 +72 -46
  20. MLatom-2.3/src/MLatom/MLatomF_src/strings.f90 +87 -0
  21. {MLatom-2.2 → MLatom-2.3}/src/MLatom/README +1 -1
  22. {MLatom-2.2 → MLatom-2.3}/src/MLatom/doc.py +8 -1
  23. {MLatom-2.2 → MLatom-2.3}/src/MLatom/header.py +8 -0
  24. MLatom-2.3/src/MLatom/interfaces/sGDML/__init__.py +0 -0
  25. MLatom-2.3/src/MLatom/mlatom_gui.py +1348 -0
  26. {MLatom-2.2 → MLatom-2.3}/src/MLatom/ref.json +6 -1
  27. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/PKG-INFO +3 -6
  28. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/SOURCES.txt +4 -0
  29. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/entry_points.txt +0 -1
  30. MLatom-2.2/src/MLatom/MLatomF_src/A_KRR_kernel.f90 +0 -962
  31. MLatom-2.2/src/MLatom/MLatomF_src/Makefile.intel +0 -4
  32. MLatom-2.2/src/MLatom/MLatomF_src/strings.f90 +0 -31
  33. {MLatom-2.2 → MLatom-2.3}/LICENSE.txt +0 -0
  34. {MLatom-2.2 → MLatom-2.3}/setup.cfg +0 -0
  35. {MLatom-2.2 → MLatom-2.3}/src/MLatom/AIQM1.py +0 -0
  36. {MLatom-2.2 → MLatom-2.3}/src/MLatom/LICENSE.CC-BY-NC-ND-4.0 +0 -0
  37. {MLatom-2.2 → MLatom-2.3}/src/MLatom/ML_NEA.py +0 -0
  38. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF +0 -0
  39. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/D_CoulombMatrix.f90 +0 -0
  40. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/MLatomFInfo.f90 +0 -0
  41. {MLatom-2.2/src/MLatom → MLatom-2.3/src/MLatom/MLatomF_src}/__init__.py +0 -0
  42. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/analyze.f90 +0 -0
  43. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/constants.f90 +0 -0
  44. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/cs.cpp +0 -0
  45. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/precision.f90 +0 -0
  46. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/stopper.f90 +0 -0
  47. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/timing.f90 +0 -0
  48. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLatomF_src/types.f90 +0 -0
  49. {MLatom-2.2 → MLatom-2.3}/src/MLatom/MLtasks.py +0 -0
  50. {MLatom-2.2/src/MLatom/aiqm1_model → MLatom-2.3/src/MLatom}/__init__.py +0 -0
  51. {MLatom-2.2/src/MLatom/documentation → MLatom-2.3/src/MLatom/aiqm1_model}/__init__.py +0 -0
  52. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv0.pt +0 -0
  53. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv1.pt +0 -0
  54. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv2.pt +0 -0
  55. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv3.pt +0 -0
  56. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv4.pt +0 -0
  57. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv5.pt +0 -0
  58. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv6.pt +0 -0
  59. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_cc_cv7.pt +0 -0
  60. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv0.pt +0 -0
  61. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv1.pt +0 -0
  62. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv2.pt +0 -0
  63. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv3.pt +0 -0
  64. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv4.pt +0 -0
  65. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv5.pt +0 -0
  66. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv6.pt +0 -0
  67. {MLatom-2.2 → MLatom-2.3}/src/MLatom/aiqm1_model/aiqm1_dft_cv7.pt +0 -0
  68. {MLatom-2.2 → MLatom-2.3}/src/MLatom/args_class.py +0 -0
  69. {MLatom-2.2 → MLatom-2.3}/src/MLatom/calculator.py +0 -0
  70. {MLatom-2.2 → MLatom-2.3}/src/MLatom/cs.so +0 -0
  71. {MLatom-2.2/src/MLatom/example → MLatom-2.3/src/MLatom/documentation}/__init__.py +0 -0
  72. {MLatom-2.2 → MLatom-2.3}/src/MLatom/documentation/installation.txt +0 -0
  73. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/E_FCI_451.dat +0 -0
  74. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/E_UHF_451.dat +0 -0
  75. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/R_451.dat +0 -0
  76. {MLatom-2.2/src/MLatom/interfaces/DeePMDkit → MLatom-2.3/src/MLatom/example}/__init__.py +0 -0
  77. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/isubtrain.dat +0 -0
  78. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/itest.dat +0 -0
  79. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/itrain.dat +0 -0
  80. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/ivalidate.dat +0 -0
  81. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/mlatom.inp +0 -0
  82. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/mlatom.saved +0 -0
  83. {MLatom-2.2 → MLatom-2.3}/src/MLatom/example/test.sh +0 -0
  84. {MLatom-2.2 → MLatom-2.3}/src/MLatom/geomopt.py +0 -0
  85. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interface_MLatomF.py +0 -0
  86. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/DeePMDkit/DP_inference.py +0 -0
  87. {MLatom-2.2/src/MLatom/interfaces/GAP → MLatom-2.3/src/MLatom/interfaces/DeePMDkit}/__init__.py +0 -0
  88. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/DeePMDkit/interface_DeePMDkit.py +0 -0
  89. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/DeePMDkit/template.json +0 -0
  90. {MLatom-2.2/src/MLatom/interfaces/PhysNet → MLatom-2.3/src/MLatom/interfaces/GAP}/__init__.py +0 -0
  91. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/GAP/interface_GAP.py +0 -0
  92. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/PhysNet/PhysNet_predict.py +0 -0
  93. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/PhysNet/PhysNet_train.py +0 -0
  94. {MLatom-2.2/src/MLatom/interfaces/TorchANI → MLatom-2.3/src/MLatom/interfaces/PhysNet}/__init__.py +0 -0
  95. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/PhysNet/interface_PhysNet.py +0 -0
  96. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/TorchANI/TorchANI_predict.py +0 -0
  97. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/TorchANI/TorchANI_train.py +0 -0
  98. {MLatom-2.2/src/MLatom/interfaces → MLatom-2.3/src/MLatom/interfaces/TorchANI}/__init__.py +0 -0
  99. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/TorchANI/interface_TorchANI.py +0 -0
  100. {MLatom-2.2/src/MLatom/interfaces/sGDML → MLatom-2.3/src/MLatom/interfaces}/__init__.py +0 -0
  101. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/sGDML/interface_sGDML.py +0 -0
  102. {MLatom-2.2 → MLatom-2.3}/src/MLatom/interfaces/sGDML/sgdml_dataset_from_extxyz.py +0 -0
  103. /MLatom-2.2/src/MLatom/mlatom_gui.py → /MLatom-2.3/src/MLatom/mlatom-gui.py +0 -0
  104. {MLatom-2.2 → MLatom-2.3}/src/MLatom/shell_cmd.py +0 -0
  105. {MLatom-2.2 → MLatom-2.3}/src/MLatom/sliceData.py +0 -0
  106. {MLatom-2.2 → MLatom-2.3}/src/MLatom/stopper.py +0 -0
  107. {MLatom-2.2 → MLatom-2.3}/src/MLatom/thermo.py +0 -0
  108. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/dependency_links.txt +0 -0
  109. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/requires.txt +0 -0
  110. {MLatom-2.2 → MLatom-2.3}/src/MLatom.egg-info/top_level.txt +0 -0
@@ -1,12 +1,11 @@
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  Metadata-Version: 2.1
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  Name: MLatom
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- Version: 2.2
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+ Version: 2.3
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  Summary: A Package for Atomistic Simulations with Machine Learning
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  Home-page: http://mlatom.com
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  Author: Pavlo O. Dral
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  Author-email: admin@mlatom.com
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  License: CC BY-NC-ND 4.0
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- Platform: UNKNOWN
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Operating System :: POSIX :: Linux
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  Classifier: Programming Language :: Fortran
@@ -127,7 +126,7 @@ MLatom also provides interfaces to some third-party software where extra ML mode
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  # About Program
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  MLatom: a Package for Atomistic Simulations with Machine Learning
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- Version 2.2
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+ Version 2.3
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  http://mlatom.com/
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  Copyright (c) 2013-2022 Pavlo O. Dral
@@ -141,7 +140,7 @@ Cite as:
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  1. Pavlo O. Dral, J. Comput. Chem. 2019, 40, 2339-2347
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  2. Pavlo O. Dral, Fuchun Ge, Bao-Xin Xue, Yi-Fan Hou, Max Pinheiro Jr, Jianxing Huang, Mario Barbatti, Top. Curr. Chem. 2021, 379, 27
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- 3. Pavlo O. Dral, Peikun Zheng, Bao-Xin Xue, Fuchun Ge, Yi-Fan Hou, Max Pinheiro Jr, MLatom: A Package for Atomistic Simulations with Machine Learning, version 2.2, Xiamen University, Xiamen, China, 2013-2022.
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+ 3. Pavlo O. Dral, Peikun Zheng, Bao-Xin Xue, Fuchun Ge, Yi-Fan Hou, Max Pinheiro Jr, MLatom: A Package for Atomistic Simulations with Machine Learning, version 2.3, Xiamen University, Xiamen, China, 2013-2022.
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  # License
@@ -149,5 +148,3 @@ Cite as:
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  This work is licensed under the [Attribution-NonCommercial-NoDerivatives 4.0 International](http://creativecommons.org/licenses/by-nc-nd/4.0/) license. See LICENSE.CC-BY-NC-ND-4.0.
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  <a rel="license" href="http://creativecommons.org/licenses/by-nc-nd/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-nd/4.0/88x31.png" /></a>
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-
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-
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  # About Program
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  MLatom: a Package for Atomistic Simulations with Machine Learning
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- Version 2.2
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+ Version 2.3
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  http://mlatom.com/
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  Copyright (c) 2013-2022 Pavlo O. Dral
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  1. Pavlo O. Dral, J. Comput. Chem. 2019, 40, 2339-2347
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  2. Pavlo O. Dral, Fuchun Ge, Bao-Xin Xue, Yi-Fan Hou, Max Pinheiro Jr, Jianxing Huang, Mario Barbatti, Top. Curr. Chem. 2021, 379, 27
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- 3. Pavlo O. Dral, Peikun Zheng, Bao-Xin Xue, Fuchun Ge, Yi-Fan Hou, Max Pinheiro Jr, MLatom: A Package for Atomistic Simulations with Machine Learning, version 2.2, Xiamen University, Xiamen, China, 2013-2022.
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+ 3. Pavlo O. Dral, Peikun Zheng, Bao-Xin Xue, Fuchun Ge, Yi-Fan Hou, Max Pinheiro Jr, MLatom: A Package for Atomistic Simulations with Machine Learning, version 2.3, Xiamen University, Xiamen, China, 2013-2022.
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  # License
@@ -43,7 +43,7 @@ with open(os.path.join(here, 'README.md')) as f:
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  setup(
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  name = pkg_name,
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- version = "2.2",
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+ version = "2.3",
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  author = "Pavlo O. Dral",
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  author_email = "admin@mlatom.com",
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  license = 'CC BY-NC-ND 4.0', # https://creativecommons.org/licenses/by-nc-nd/4.0/
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  packages = find_packages('src'),
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  package_dir = {'' : 'src'},
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  # scripts = ['mlatom', 'MLatomF'],
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- package_data = {"": ['MLatomF', '*.json', 'cs.so', '*.pt', '*.dat', '*.txt', '*.inp', '*.saved', '*.sh']},
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+ package_data = {"": ['MLatomF', 'README', '*.json', 'cs.so', '*.cpp', '*.pt', '*.dat', '*.txt', '*.inp', '*.f90', 'Makefile', 'Makefile.intel', '*.saved', '*.sh']},
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  classifiers = [
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  "Programming Language :: Python :: 3",
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  "Operating System :: POSIX :: Linux",
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  !---------------------------------------------------------------------------!
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  ! !
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  ! MLatom: a Package for Atomistic Simulations with Machine Learning !
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- ! Version 2.2 !
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+ ! Version 2.3 !
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  ! http://mlatom.com/ !
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  ! !
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  ! Copyright (c) 2013-2022 Pavlo O. Dral !
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  ! Pavlo O. Dral, Peikun Zheng, Bao-Xin Xue, Fuchun Ge, Yi-Fan Hou, !
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  ! Max Pinheiro Jr, !
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  ! MLatom: A Package for Atomistic Simulations with Machine Learning !
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- ! version 2.2, Xiamen University, Xiamen, China, 2013-2022 !
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+ ! version 2.2.1, Xiamen University, Xiamen, China, 2013-2022 !
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  ! !
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  !---------------------------------------------------------------------------!
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