misleep 0.3.1__tar.gz → 0.3.2__tar.gz

{misleep-0.3.1 → misleep-0.3.2}/CHANGELOG.md

@@ -5,6 +5,22 @@ All notable changes to MiSleep are documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.3.2] — 2026-08-24
+
+### Fixed
+
+- **Filtering broke on fractional sampling frequencies**: `MiData.add()` (used
+  by `MiData.filter()`) recomputed the duration with
+  `math.floor(len(signal) / sf)` from a signal that had already been
+  truncated to `int(duration * sf)` samples. When `sf` is a decimal (e.g.
+  `99.9927` Hz), that came out one second short, so filtering either raised a
+  spurious "new signal is shorter" error or produced a channel whose length /
+  duration did not match the original signal, which then failed the signal /
+  label consistency checks in the GUI. The check now compares sample counts
+  against `int(duration * sf)` directly, so filtering preserves the sample
+  count and duration for any positive `sf` while still rejecting genuinely
+  short signals.
+
 ## [0.3.1] — 2026-08-18
 
 ### Added

{misleep-0.3.1/src/misleep.egg-info → misleep-0.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: misleep
-Version: 0.3.1
+Version: 0.3.2
 Summary: MiSleep: Mice sleep EEG/EMG visualization, scoring, and analysis
 Author-email: Xueqiang Wang <swang9194@gmail.com>
 Maintainer-email: Xueqiang Wang <swang9194@gmail.com>

{misleep-0.3.1 → misleep-0.3.2}/docs/config_file.md

@@ -23,8 +23,8 @@ wipe your personal settings. Open the user file from the GUI via
 
 | key | default | meaning |
 |-----|---------|---------|
-| `version` | `v0.3.1` | displayed in the About dialog |
-| `updatetime` | `2026/08/18` | displayed in the About dialog |
+| `version` | `v0.3.2` | displayed in the About dialog |
+| `updatetime` | `2026/08/24` | displayed in the About dialog |
 | `marker` | `['half_signal', 'first REM', ...]` | marker label list (label picker) |
 | `startend` | `['high_theta', 'REM', ...]` | start-end label list (label picker) |
 | `statemap` | `{"1": "NREM", "2": "REM", "3": "Wake", "4": "INIT", ...}` | state code -> name mapping (JSON) |
@@ -48,8 +48,8 @@ wipe your personal settings. Open the user file from the GUI via
 
 ```ini
 [gui]
-version = v0.3.1
-updatetime = 2026/08/18
+version = v0.3.2
+updatetime = 2026/08/24
 marker = ['half_signal', 'first REM', 'WindEEG', 'W-R', 'maker']
 startend = ['high_theta', 'REM', 'Wake', 'Spindle', 'SWA', 'start end label', 'start end label']
 statemap = {"1": "NREM", "2": "REM", "3": "Wake", "4": "INIT", "5": "IS", "6": "MicroArousal"}

{misleep-0.3.1 → misleep-0.3.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "misleep"
-version = "0.3.1"
+version = "0.3.2"
 description = "MiSleep: Mice sleep EEG/EMG visualization, scoring, and analysis"
 readme = "README.md"
 requires-python = ">=3.8"

{misleep-0.3.1 → misleep-0.3.2}/src/misleep/__init__.py

@@ -22,7 +22,7 @@ works without PySide6; import ``misleep.gui`` explicitly when needed.
 from importlib import import_module
 
 __author__ = "Xueqiang Wang <swang9194@gmail.com>"
-__version__ = "0.3.1"
+__version__ = "0.3.2"
 
 # Importing ``misleep`` used to import scipy, pandas, sklearn and matplotlib
 # immediately.  The GUI necessarily imports some of those later, but making

{misleep-0.3.1 → misleep-0.3.2}/src/misleep/config/default_config.ini

@@ -15,8 +15,8 @@
 # overwritten on the next package update.
 
 [gui]
-version = v0.3.1
-updatetime = 2026/08/18
+version = v0.3.2
+updatetime = 2026/08/24
 marker = ['half_signal', 'first REM', 'WindEEG', 'W-R', 'maker']
 startend = ['high_theta', 'REM', 'Wake', 'Spindle', 'SWA', 'start end label', 'start end label']
 statemap = {"1": "NREM", "2": "REM", "3": "Wake", "4": "INIT"}

{misleep-0.3.1 → misleep-0.3.2}/src/misleep/data/midata.py

@@ -210,15 +210,25 @@ class MiData:
         if not isinstance(sf, (int, float)) or not math.isfinite(sf) or sf <= 0:
             raise TypeError(f"Sample frequency should be a float, got {type(sf)}")
 
-        _duration = math.floor(len(signal) / sf)
-        if _duration < self._duration:
+        # Every channel shares the same integer duration: the sample count a
+        # channel of ``sf`` Hz needs to cover ``self._duration`` seconds is
+        # ``int(self._duration * sf)`` (the same truncation used in
+        # :meth:`__init__`).  Compare sample counts directly instead of
+        # re-deriving the duration from an already-truncated length -- with a
+        # fractional sampling frequency (e.g. 99.9927 Hz) the naive
+        # ``math.floor(len(signal) / sf)`` can come out one second short and
+        # wrongly reject signals that are exactly as long as the existing
+        # channels (this made ``MiData.filter()`` fail on fractional-sf data).
+        expected_samples = int(self._duration * sf)
+        if len(signal) < expected_samples:
             raise ValueError(
-                f"The new signal is shorter ({_duration}s) than the existing data "
-                f"({self._duration}s)")
+                f"The new signal is shorter ({len(signal)} samples) than the "
+                f"existing data ({self._duration}s, {expected_samples} samples "
+                f"at {sf} Hz)")
 
         channel = _unique_name(channel, self.channels)
 
-        self._signals.append(signal[:int(self._duration * sf)])
+        self._signals.append(signal[:expected_samples])
         self._channels.append(channel)
         self._n_channels = len(self._channels)
         self._sf.append(sf)

{misleep-0.3.1 → misleep-0.3.2}/src/misleep/gui/uis/about.ui

@@ -58,14 +58,14 @@
       <item>
        <widget class="QLabel" name="VersionLabel">
         <property name="text">
-         <string>Version: 0.3.1</string>
+         <string>Version: 0.3.2</string>
         </property>
        </widget>
       </item>
       <item>
        <widget class="QLabel" name="UpdateLabel">
         <property name="text">
-         <string>Update: 2026/08/18</string>
+         <string>Update: 2026/08/24</string>
         </property>
        </widget>
       </item>

{misleep-0.3.1 → misleep-0.3.2}/src/misleep/gui/uis/about_ui.py

@@ -73,8 +73,8 @@ class Ui_AboutDialog(object):
         AboutDialog.setWindowTitle(QCoreApplication.translate("AboutDialog", u"About", None))
         self.label_4.setText(QCoreApplication.translate("AboutDialog", u"<html><head/><body><p><img src=\":/logo/entire_logo.png\"/></p></body></html>", None))
         self.groupBox.setTitle(QCoreApplication.translate("AboutDialog", u"MiSleep", None))
-        self.VersionLabel.setText(QCoreApplication.translate("AboutDialog", u"Version: 0.3.1", None))
-        self.UpdateLabel.setText(QCoreApplication.translate("AboutDialog", u"Update: 2026/08/18", None))
+        self.VersionLabel.setText(QCoreApplication.translate("AboutDialog", u"Version: 0.3.2", None))
+        self.UpdateLabel.setText(QCoreApplication.translate("AboutDialog", u"Update: 2026/08/24", None))
         self.CopyrightLabel.setText(QCoreApplication.translate("AboutDialog", u"Copyright \u00a9 2023\u20132026 Xueqiang Wang.", None))
     # retranslateUi
 

{misleep-0.3.1 → misleep-0.3.2/src/misleep.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: misleep
-Version: 0.3.1
+Version: 0.3.2
 Summary: MiSleep: Mice sleep EEG/EMG visualization, scoring, and analysis
 Author-email: Xueqiang Wang <swang9194@gmail.com>
 Maintainer-email: Xueqiang Wang <swang9194@gmail.com>

{misleep-0.3.1 → misleep-0.3.2}/tests/test_data.py

@@ -88,6 +88,59 @@ def test_midata_filter(midata):
     assert midata.channels[-1].startswith("EEG_bandpass")
 
 
+@pytest.mark.parametrize("sf", [99.9927, 100.5, 256.256, 305.005])
+def test_midata_filter_fractional_sf_preserves_length(sf):
+    """Filtering must not change the sample count or duration when sf is fractional.
+
+    Regression: ``MiData.add`` re-derived the duration with
+    ``math.floor(len(signal) / sf)`` from a signal already truncated to
+    ``int(duration * sf)`` samples; with a fractional sf that could come out
+    one second short and made ``filter()`` raise a spurious error (or produce
+    a shorter channel).
+    """
+    rng = np.random.default_rng(42)
+    n_raw = int(1000 * sf)
+    md = MiData(signals=[rng.standard_normal(n_raw),
+                         rng.standard_normal(n_raw)],
+                channels=["EEG", "EMG"], sf=[sf, sf], time="20240101-00:00:00")
+    duration, lengths = md.duration, [len(s) for s in md.signals]
+
+    md.filter(chans=["EEG"], btype="bandpass", low=0.5, high=30)
+
+    assert md.n_channels == 3
+    assert md.duration == duration
+    assert len(md.signals) == 3
+    assert all(len(sig) == length for sig, length in zip(md.signals, lengths))
+
+
+def test_midata_add_fractional_sf():
+    """A channel with ``int(duration * sf)`` samples must be accepted."""
+    sf = 99.9927
+    md = MiData(signals=[np.zeros(int(1000 * sf)), np.zeros(int(1000 * sf))],
+                channels=["EEG", "EMG"], sf=[sf, sf], time="20240101-00:00:00")
+    n = md.n_channels
+    duration, expected = md.duration, int(md.duration * sf)
+
+    # Exactly as many samples as the existing channels -> accepted as-is
+    md.add(np.zeros(expected), "EEG2", sf)
+    assert md.n_channels == n + 1
+    assert len(md.signals[-1]) == expected
+    assert md.duration == duration  # duration unchanged by add()
+
+    # A genuinely shorter signal is still rejected
+    with pytest.raises(ValueError):
+        md.add(np.zeros(expected - 10), "TOO_SHORT", sf)
+
+
+def test_midata_add_fractional_sf_rejects_short_signal():
+    """Fractional-sf channels that are truly too short must still be rejected."""
+    sf = 256.256
+    md = MiData(signals=[np.zeros(int(1000 * sf)), np.zeros(int(1000 * sf))],
+                channels=["EEG", "EMG"], sf=[sf, sf], time="20240101-00:00:00")
+    with pytest.raises(ValueError):
+        md.add(np.zeros(500 * 256), "TOO_SHORT", 256.0)
+
+
 def test_midata_differential(midata):
     midata.differential(chan1="EEG", chan2="EMG")
     assert midata.channels[-1] == "EEG_EMG_DIFF"

{misleep-0.3.1 → misleep-0.3.2}/tests/test_gui.py

@@ -21,7 +21,7 @@ def _pyside6_available():
 def test_public_api():
     import misleep
 
-    assert misleep.__version__ == "0.3.1"
+    assert misleep.__version__ == "0.3.2"
     for name in [
         "MiData",
         "MiAnnotation",